Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000568

Physical Location & Seq

Genomic Coordinates Forward (+)

42728927 .. 42729640

Gene Structure 714 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57559

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGAAAGCAGTGGGACTAAAATGCCCTCACATTCCGGCGGTTTACCCAAGGAGCAGGAGCACGCTATCATTGTCTCCGCCCTGAAACAGGTAGTCCGCGGTGGCACCACCCAGCCACCGCCGCCGCAGCTCCATTATGCCTCATCATCACTTCCTCCAACAGGTGGCACCGATCAAGTCGTGATACCTTTTTCGGATTGTGACGCGTGTCAGGTATGTAATATGAAGATGGACGATTGCCTGGGCTATGGTTTGTTCCGGCCAAGCGAGCAAGACGAAGGGAAAGGGAAAAAGATGAAGACAAGCAAGTACAGGGGAGTGCGGCAGAGACCAGGGGGGAAATGGGTTGCGGAGATTCGTGACTCGCGTCGCGCGGTTCGGGTTTGGCTCGGGACATTTCAGACGGCGGAGGAGGCAGCCAGGGCTTATGACACAGCGGCAATCGAGTTCCGAGGAGAGAGAGCCAAGCTCAACTTCCCGCTAAGCAGTGAAGCTAGTACTACTACTACTGGTGCAGCATTGACTAGGCAAAGCATGGAGACTGGTGAGGTCAATCAAGTCACCGCGAGTTCTGTGAAGTCAGCGAATCAGGAAGAGGGACAGAGTAGTGATGTTAAGGACGAAGACATCGATCGCTTCATCTGGGAAATGCTTAAAAATGATGACAAAAATGAAGATTTAAGCACACGGGTCAACTCAAATTTGTTAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

237

Amino Acids

25.98

Weight (kDa)

5.75

Isoelectric Point (pI)

51.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	102 - 152	2.3e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20350 AT5G67000 AT5G67010
fragaria_vesca	FvH4_1g15960
malus_domestica	MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica	Prupe.7G134100_v2.0.a1
pyrus_communis	pycom02g13800 pycom15g24630
rosa_chinensis	RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata	RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora	Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa	Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha	Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana	Rw1G018940 Rw2G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	104, 167
AccB7I	CCANNNNNTGG	1 cut(s)	164
AccII	CGCG	6 cut(s)	99, 206, 367, 372, 374, 566
AcoI	YGGCCR	1 cut(s)	260
AcsI	RAATTY	1 cut(s)	700
AfaI	GTAC	2 cut(s)	311, 499
AfiI	CCNNNNNNNGG	3 cut(s)	88, 161, 164
AflIII	ACRYGT	1 cut(s)	204
AjnI	CCWGG	3 cut(s)	240, 331, 419
AjuI	GAANNNNNNNTTGG	2 cut(s)	458, 490
AluBI	AGCT	3 cut(s)	130, 469, 494
AluI	AGCT	3 cut(s)	130, 469, 494
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	3 cut(s)	79, 322, 533
Ama87I	CYCGRG	1 cut(s)	389
AoxI	GGCC	1 cut(s)	260
ApeKI	GCWGC	3 cut(s)	127, 416, 515
ApoI	RAATTY	1 cut(s)	700
AspLEI	GCGC	1 cut(s)	374
AsuHPI	GGTGA	2 cut(s)	553, 557
AvaI	CYCGRG	1 cut(s)	389
BanI	GGYRCC	2 cut(s)	104, 167
BbsI	GAAGAC	2 cut(s)	305, 630
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	3 cut(s)	139, 428, 527
BccI	CCATC	1 cut(s)	223
BceAI	ACGGC	1 cut(s)	420
BciT130I	CCWGG	3 cut(s)	242, 333, 421
BcoDI	GTCTC	3 cut(s)	79, 322, 533
BfaI	CTAG	2 cut(s)	495, 525
BisI	GCNGC	7 cut(s)	122, 125, 128, 323, 417, 438, 516
BlpI	GCTNAGC	1 cut(s)	482
BlsI	GCNGC	7 cut(s)	123, 126, 129, 324, 418, 439, 517
BmcAI	AGTACT	1 cut(s)	499
Bme1390I	CCNGG	3 cut(s)	242, 333, 421
BmeT110I	CYCGRG	1 cut(s)	389
BmiI	GGNNCC	2 cut(s)	106, 169
BmrFI	CCNGG	3 cut(s)	242, 333, 421
BoxI	GACNNNNGTC	2 cut(s)	207, 366
BpiI	GAAGAC	2 cut(s)	305, 630
BplI	GAGNNNNNCTC	2 cut(s)	453, 485
Bpu1102I	GCTNAGC	1 cut(s)	482
Bsa29I	ATCGAT	1 cut(s)	630
BsaI	GGTCTC	1 cut(s)	322
BsaJI	CCNNGG	6 cut(s)	48, 97, 241, 332, 420, 451
Bsc4I	CCNNNNNNNGG	3 cut(s)	88, 161, 164
Bse1I	ACTGG	2 cut(s)	514, 547
BseBI	CCWGG	3 cut(s)	242, 333, 421
BseCI	ATCGAT	1 cut(s)	630
BseDI	CCNNGG	6 cut(s)	48, 97, 241, 332, 420, 451
BseLI	CCNNNNNNNGG	3 cut(s)	88, 161, 164
BseNI	ACTGG	2 cut(s)	514, 547
BseRI	GAGGAG	2 cut(s)	425, 468
BseXI	GCAGC	3 cut(s)	139, 428, 527
BseYI	CCCAGC	1 cut(s)	111
BsgI	GTGCAG	1 cut(s)	534
Bsh1236I	CGCG	6 cut(s)	99, 206, 367, 372, 374, 566
Bsh1285I	CGRYCG	1 cut(s)	634
BshFI	GGCC	1 cut(s)	262
BshNI	GGYRCC	2 cut(s)	104, 167
BshVI	ATCGAT	1 cut(s)	630
BsiEI	CGRYCG	1 cut(s)	634
BsiHKAI	GWGCWC	1 cut(s)	63
BsiHKCI	CYCGRG	1 cut(s)	389
BsiSI	CCGG	2 cut(s)	36, 259
BslFI	GGGAC	3 cut(s)	28, 406, 612
BslI	CCNNNNNNNGG	3 cut(s)	88, 161, 164
BsmAI	GTCTC	3 cut(s)	79, 322, 533
BsmFI	GGGAC	3 cut(s)	28, 406, 612
BsnI	GGCC	1 cut(s)	262
Bso31I	GGTCTC	1 cut(s)	322
BsoBI	CYCGRG	1 cut(s)	389
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	2 cut(s)	172, 631
Bsp1720I	GCTNAGC	1 cut(s)	482
BspANI	GGCC	1 cut(s)	262
BspDI	ATCGAT	1 cut(s)	630
BspFNI	CGCG	6 cut(s)	99, 206, 367, 372, 374, 566
BspLI	GGNNCC	2 cut(s)	106, 169
BspT107I	GGYRCC	2 cut(s)	104, 167
BspTNI	GGTCTC	1 cut(s)	322
BsrI	ACTGG	2 cut(s)	514, 547
BssECI	CCNNGG	6 cut(s)	48, 97, 241, 332, 420, 451
BssMI	GATC	2 cut(s)	172, 631
BssT1I	CCWWGG	1 cut(s)	48
Bst2UI	CCWGG	3 cut(s)	242, 333, 421
Bst6I	CTCTTC	1 cut(s)	588
BstC8I	GCNNGC	2 cut(s)	63, 269
BstDEI	CTNAG	1 cut(s)	482
BstDSI	CCRYGG	1 cut(s)	97
BstENI	CCTNNNNNAGG	2 cut(s)	86, 159
BstFNI	CGCG	6 cut(s)	99, 206, 367, 372, 374, 566
BstHHI	GCGC	1 cut(s)	374
BstKTI	GATC	2 cut(s)	175, 634
BstMAI	GTCTC	3 cut(s)	79, 322, 533
BstMBI	GATC	2 cut(s)	172, 631
BstMCI	CGRYCG	1 cut(s)	634
BstMWI	GCNNNNNNNGC	5 cut(s)	121, 127, 268, 413, 422
BstNI	CCWGG	3 cut(s)	242, 333, 421
BstPAI	GACNNNNGTC	2 cut(s)	207, 366
BstSCI	CCNGG	3 cut(s)	240, 331, 419
BstUI	CGCG	6 cut(s)	99, 206, 367, 372, 374, 566
BstV1I	GCAGC	3 cut(s)	139, 428, 527
BstV2I	GAAGAC	2 cut(s)	305, 630
Bsu15I	ATCGAT	1 cut(s)	630
BsuRI	GGCC	1 cut(s)	262
BsuTUI	ATCGAT	1 cut(s)	630
BtgI	CCRYGG	1 cut(s)	97
BtsI	GCAGTG	2 cut(s)	16, 493
BtsIMutI	CAGTG	2 cut(s)	16, 493
Cac8I	GCNNGC	2 cut(s)	63, 269
CfoI	GCGC	1 cut(s)	374
Cfr42I	CCGCGG	1 cut(s)	100
ClaI	ATCGAT	1 cut(s)	630
CseI	GACGC	2 cut(s)	212, 356
Csp6I	GTAC	2 cut(s)	310, 498
CviAII	CATG	1 cut(s)	535
CviQI	GTAC	2 cut(s)	310, 498
DdeI	CTNAG	1 cut(s)	482
DpnI	GATC	2 cut(s)	174, 633
DpnII	GATC	2 cut(s)	172, 631
EaeI	YGGCCR	1 cut(s)	260
Eam1104I	CTCTTC	1 cut(s)	588
EarI	CTCTTC	1 cut(s)	588
EciI	GGCGGA	2 cut(s)	67, 422
Eco130I	CCWWGG	1 cut(s)	48
Eco31I	GGTCTC	1 cut(s)	322
Eco88I	CYCGRG	1 cut(s)	389
EcoNI	CCTNNNNNAGG	2 cut(s)	86, 159
EcoRII	CCWGG	3 cut(s)	240, 331, 419
EcoT14I	CCWWGG	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	1 cut(s)	538
FaiI	YATR	6 cut(s)	138, 217, 224, 249, 429, 536
FalI	AAGNNNNNCTT	2 cut(s)	458, 490
FaqI	GGGAC	3 cut(s)	28, 406, 612
FatI	CATG	1 cut(s)	534
FauI	CCCGC	1 cut(s)	486
Fnu4HI	GCNGC	7 cut(s)	122, 125, 128, 323, 417, 438, 516
Fsp4HI	GCNGC	7 cut(s)	122, 125, 128, 323, 417, 438, 516
FspBI	CTAG	2 cut(s)	495, 525
GlaI	GCGC	1 cut(s)	373
GluI	GCNGC	7 cut(s)	122, 125, 128, 323, 417, 438, 516
GsaI	CCCAGC	1 cut(s)	115
HaeIII	GGCC	1 cut(s)	262
HapII	CCGG	2 cut(s)	36, 259
HgaI	GACGC	2 cut(s)	212, 356
HhaI	GCGC	1 cut(s)	374
Hin1II	CATG	1 cut(s)	538
Hin6I	GCGC	1 cut(s)	372
HinP1I	GCGC	1 cut(s)	372
HincII	GTYRAC	1 cut(s)	694
HindII	GTYRAC	1 cut(s)	694
HinfI	GANTC	3 cut(s)	355, 362, 586
HpaII	CCGG	2 cut(s)	36, 259
HphI	GGTGA	2 cut(s)	553, 557
Hpy166II	GTNNAC	2 cut(s)	44, 694
Hpy188I	TCNGA	3 cut(s)	196, 402, 452
Hpy188III	TCNNGA	4 cut(s)	181, 359, 391, 590
Hpy8I	GTNNAC	2 cut(s)	44, 694
Hpy99I	CGWCG	1 cut(s)	372
HpyAV	CCTTC	1 cut(s)	272
HpyCH4V	TGCA	1 cut(s)	515
HpyF10VI	GCNNNNNNNGC	5 cut(s)	121, 127, 268, 413, 422
HpyF3I	CTNAG	1 cut(s)	482
Hsp92II	CATG	1 cut(s)	538
HspAI	GCGC	1 cut(s)	372
KspI	CCGCGG	1 cut(s)	100
Kzo9I	GATC	2 cut(s)	172, 631
LmnI	GCTCC	3 cut(s)	52, 58, 135
Lsp1109I	GCAGC	3 cut(s)	139, 428, 527
MaeI	CTAG	2 cut(s)	495, 525
MaeIII	GTNAC	3 cut(s)	200, 359, 559
MalI	GATC	2 cut(s)	174, 633
MboI	GATC	2 cut(s)	172, 631
MboII	GAAGA	5 cut(s)	238, 310, 605, 635, 686
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	2 cut(s)	700, 709
MluI	ACGCGT	1 cut(s)	204
MlyI	GAGTC	1 cut(s)	356
MmeI	TCCRAC	1 cut(s)	182
MnlI	CCTC	8 cut(s)	37, 151, 165, 403, 406, 446, 541, 589
MseI	TTAA	5 cut(s)	615, 654, 680, 707, 712
MspA1I	CMGCKG	2 cut(s)	99, 437
MspI	CCGG	2 cut(s)	36, 259
MspR9I	CCNGG	3 cut(s)	242, 333, 421
MvaI	CCWGG	3 cut(s)	242, 333, 421
MvnI	CGCG	6 cut(s)	99, 206, 367, 372, 374, 566
MwoI	GCNNNNNNNGC	5 cut(s)	121, 127, 268, 413, 422
NdeII	GATC	2 cut(s)	172, 631
NlaIII	CATG	1 cut(s)	538
NlaIV	GGNNCC	2 cut(s)	106, 169
NmuCI	GTSAC	3 cut(s)	200, 359, 559
PcsI	WCGNNNNNNNCGW	2 cut(s)	364, 627
PfeI	GAWTC	2 cut(s)	355, 586
PflMI	CCANNNNNTGG	1 cut(s)	164
PkrI	GCNGC	7 cut(s)	123, 126, 129, 324, 418, 439, 517
Ple19I	CGATCG	1 cut(s)	634
PleI	GAGTC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	356
PshAI	GACNNNNGTC	2 cut(s)	207, 366
Psp6I	CCWGG	3 cut(s)	240, 331, 419
PspFI	CCCAGC	1 cut(s)	111
PspGI	CCWGG	3 cut(s)	240, 331, 419
PspN4I	GGNNCC	2 cut(s)	106, 169
PvuI	CGATCG	1 cut(s)	634
RsaI	GTAC	2 cut(s)	311, 499
RsaNI	GTAC	2 cut(s)	310, 498
SacII	CCGCGG	1 cut(s)	100
SaqAI	TTAA	5 cut(s)	615, 654, 680, 707, 712
SatI	GCNGC	7 cut(s)	122, 125, 128, 323, 417, 438, 516
Sau3AI	GATC	2 cut(s)	172, 631
ScaI	AGTACT	1 cut(s)	499
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	3 cut(s)	242, 333, 421
SduI	GDGCHC	1 cut(s)	63
SetI	ASST	8 cut(s)	93, 132, 166, 190, 216, 471, 496, 552
Sfr303I	CCGCGG	1 cut(s)	100
SgrBI	CCGCGG	1 cut(s)	100
Sse9I	AATT	2 cut(s)	700, 709
SspMI	CTAG	2 cut(s)	495, 525
StyD4I	CCNGG	3 cut(s)	240, 331, 419
StyI	CCWWGG	1 cut(s)	48
TaqI	TCGA	2 cut(s)	444, 630
TasI	AATT	2 cut(s)	700, 709
TatI	WGTACW	2 cut(s)	309, 497
TauI	GCSGC	4 cut(s)	124, 127, 325, 440
TfiI	GAWTC	2 cut(s)	355, 586
Tru1I	TTAA	5 cut(s)	615, 654, 680, 707, 712
Tru9I	TTAA	5 cut(s)	615, 654, 680, 707, 712
TscAI	CASTG	2 cut(s)	16, 493
TseFI	GTSAC	3 cut(s)	200, 359, 559
TseI	GCWGC	3 cut(s)	127, 416, 515
Tsp45I	GTSAC	3 cut(s)	200, 359, 559
TspDTI	ATGAA	4 cut(s)	239, 311, 628, 687
TspRI	CASTG	2 cut(s)	16, 493
Van91I	CCANNNNNTGG	1 cut(s)	164
XagI	CCTNNNNNAGG	2 cut(s)	86, 159
XapI	RAATTY	1 cut(s)	700
XcmI	CCANNNNNNNNNTGG	1 cut(s)	339
XspI	CTAG	2 cut(s)	495, 525
ZrmI	AGTACT	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.