Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000568

Physical Location & Seq

Genomic Coordinates Forward (+)

76306096 .. 76306758

Gene Structure 663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00138190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGAAATCAGTGGGACTAAAATGCCCTCGCATTCCGGCGGTTTACCCAAGGAGCAGGAGTACGCTATCATTGTCGATGCCCTGAAACAGGTAGTCCGCGGTGGCACCACCCAGCCACCGCCGCCGCAGCTCCATTATGCCTCATCATCACTTCCTCCAACGGGTGGCACCGATCAAGTCGTGATACCTTTTTCGGATAGTGACACGTGTCAGGTATGTAATATGAAGATGGACGATTGCCTTGGCTGTGGTTTGTTCCTGCCAAGCGAGCAAGACGAAGGGAAAGGGAAAAAGATGAAGACGAGCAAGTACAGGAGAGTGCGGCAGAGACCAGGGGGAAAATGGGCGGCGGAGATTCGTGACCCACGTCGCGCGGCTCGGGTTTGGCTCGGGACGTTCCAGTCGGAGGAGGAGGCAGCCAGGGCTTATGACACGGCGGCGATCGAGTTCCGAGGAGAGAGAGCCAAGCTCAACTTCCCGCTAAGCAGTGAAGCTGGTACTACTACTACTACTGGTGCAGCATTGACTAGGCAAAGCATGGAGACTGGTGAGGTCAATGAAGTAACCGCGAGTTCTGTGAAGTCAGCGAATCAGGAAGAGGGACGGAGTAGTGATGTTAAGGACGAAGACATCGATCGCTTGCTTCATCTGGGAAATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

220

Amino Acids

23.89

Weight (kDa)

5.74

Isoelectric Point (pI)

57.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	102 - 152	7.6e-11	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20350 AT5G67000 AT5G67010
fragaria_vesca	FvH4_1g15960
malus_domestica	MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica	Prupe.7G134100_v2.0.a1
pyrus_communis	pycom02g13800 pycom15g24630
rosa_chinensis	RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata	RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora	Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa	Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha	Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana	Rw1G018940 Rw2G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	400
AccB1I	GGYRCC	2 cut(s)	104, 167
AccB7I	CCANNNNNTGG	1 cut(s)	164
AccII	CGCG	4 cut(s)	99, 372, 374, 569
AcvI	CACGTG	1 cut(s)	207
AfaI	GTAC	3 cut(s)	62, 311, 499
AfiI	CCNNNNNNNGG	4 cut(s)	88, 161, 164, 406
AflIII	ACRYGT	2 cut(s)	204, 206
AjiI	CACGTC	1 cut(s)	368
AjnI	CCWGG	2 cut(s)	331, 419
AjuI	GAANNNNNNNTTGG	2 cut(s)	458, 490
AluBI	AGCT	3 cut(s)	130, 469, 494
AluI	AGCT	3 cut(s)	130, 469, 494
Alw26I	GTCTC	2 cut(s)	322, 536
Ama87I	CYCGRG	2 cut(s)	378, 389
ApeKI	GCWGC	3 cut(s)	127, 416, 518
AspLEI	GCGC	1 cut(s)	374
AsuHPI	GGTGA	1 cut(s)	560
AvaI	CYCGRG	2 cut(s)	378, 389
BanI	GGYRCC	2 cut(s)	104, 167
BbrPI	CACGTG	1 cut(s)	207
BbsI	GAAGAC	2 cut(s)	305, 633
BbvI	GCAGC	3 cut(s)	139, 428, 530
BccI	CCATC	1 cut(s)	223
BceAI	ACGGC	1 cut(s)	450
BciT130I	CCWGG	2 cut(s)	333, 421
BcoDI	GTCTC	2 cut(s)	322, 536
BfaI	CTAG	1 cut(s)	528
BisI	GCNGC	9 cut(s)	122, 125, 128, 323, 348, 375, 417, 438, 519
BlpI	GCTNAGC	1 cut(s)	482
BlsI	GCNGC	9 cut(s)	123, 126, 129, 324, 349, 376, 418, 439, 520
Bme1390I	CCNGG	2 cut(s)	333, 421
BmeT110I	CYCGRG	2 cut(s)	378, 389
BmgBI	CACGTC	1 cut(s)	368
BmiI	GGNNCC	2 cut(s)	106, 169
BmrFI	CCNGG	2 cut(s)	333, 421
BmsI	GCATC	1 cut(s)	67
BoxI	GACNNNNGTC	2 cut(s)	207, 366
BpiI	GAAGAC	2 cut(s)	305, 633
BplI	GAGNNNNNCTC	2 cut(s)	453, 485
Bpu1102I	GCTNAGC	1 cut(s)	482
Bsa29I	ATCGAT	1 cut(s)	633
BsaAI	YACGTR	1 cut(s)	207
BsaI	GGTCTC	1 cut(s)	322
BsaJI	CCNNGG	6 cut(s)	48, 97, 241, 332, 420, 451
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	4 cut(s)	88, 161, 164, 406
Bse1I	ACTGG	3 cut(s)	400, 517, 550
BseBI	CCWGG	2 cut(s)	333, 421
BseCI	ATCGAT	1 cut(s)	633
BseDI	CCNNGG	6 cut(s)	48, 97, 241, 332, 420, 451
BseLI	CCNNNNNNNGG	4 cut(s)	88, 161, 164, 406
BseNI	ACTGG	3 cut(s)	400, 517, 550
BseRI	GAGGAG	3 cut(s)	422, 425, 468
BseXI	GCAGC	3 cut(s)	139, 428, 530
BseYI	CCCAGC	1 cut(s)	111
BsgI	GTGCAG	1 cut(s)	537
Bsh1236I	CGCG	4 cut(s)	99, 372, 374, 569
Bsh1285I	CGRYCG	2 cut(s)	444, 637
BshNI	GGYRCC	2 cut(s)	104, 167
BshVI	ATCGAT	1 cut(s)	633
BsiEI	CGRYCG	2 cut(s)	444, 637
BsiHKCI	CYCGRG	2 cut(s)	378, 389
BsiSI	CCGG	1 cut(s)	36
BslFI	GGGAC	3 cut(s)	28, 406, 615
BslI	CCNNNNNNNGG	4 cut(s)	88, 161, 164, 406
BsmAI	GTCTC	2 cut(s)	322, 536
BsmFI	GGGAC	3 cut(s)	28, 406, 615
BsmI	GAATGC	1 cut(s)	31
Bso31I	GGTCTC	1 cut(s)	322
BsoBI	CYCGRG	2 cut(s)	378, 389
Bsp143I	GATC	3 cut(s)	172, 441, 634
Bsp1720I	GCTNAGC	1 cut(s)	482
BspDI	ATCGAT	1 cut(s)	633
BspFNI	CGCG	4 cut(s)	99, 372, 374, 569
BspLI	GGNNCC	2 cut(s)	106, 169
BspT107I	GGYRCC	2 cut(s)	104, 167
BspTNI	GGTCTC	1 cut(s)	322
BsrI	ACTGG	3 cut(s)	400, 517, 550
BssECI	CCNNGG	6 cut(s)	48, 97, 241, 332, 420, 451
BssMI	GATC	3 cut(s)	172, 441, 634
BssT1I	CCWWGG	2 cut(s)	48, 241
Bst2UI	CCWGG	2 cut(s)	333, 421
Bst6I	CTCTTC	1 cut(s)	591
BstBAI	YACGTR	1 cut(s)	207
BstC8I	GCNNGC	2 cut(s)	269, 641
BstDEI	CTNAG	1 cut(s)	482
BstDSI	CCRYGG	1 cut(s)	97
BstENI	CCTNNNNNAGG	1 cut(s)	86
BstFNI	CGCG	4 cut(s)	99, 372, 374, 569
BstHHI	GCGC	1 cut(s)	374
BstKTI	GATC	3 cut(s)	175, 444, 637
BstMAI	GTCTC	2 cut(s)	322, 536
BstMBI	GATC	3 cut(s)	172, 441, 634
BstMCI	CGRYCG	2 cut(s)	444, 637
BstMWI	GCNNNNNNNGC	4 cut(s)	121, 127, 268, 422
BstNI	CCWGG	2 cut(s)	333, 421
BstPAI	GACNNNNGTC	2 cut(s)	207, 366
BstSCI	CCNGG	2 cut(s)	331, 419
BstUI	CGCG	4 cut(s)	99, 372, 374, 569
BstV1I	GCAGC	3 cut(s)	139, 428, 530
BstV2I	GAAGAC	2 cut(s)	305, 633
Bsu15I	ATCGAT	1 cut(s)	633
BsuTUI	ATCGAT	1 cut(s)	633
BtgI	CCRYGG	1 cut(s)	97
BtrI	CACGTC	1 cut(s)	368
BtsI	GCAGTG	1 cut(s)	493
BtsIMutI	CAGTG	2 cut(s)	16, 493
Cac8I	GCNNGC	2 cut(s)	269, 641
CfoI	GCGC	1 cut(s)	374
Cfr42I	CCGCGG	1 cut(s)	100
ClaI	ATCGAT	1 cut(s)	633
Csp6I	GTAC	3 cut(s)	61, 310, 498
CviAII	CATG	1 cut(s)	538
CviQI	GTAC	3 cut(s)	61, 310, 498
DdeI	CTNAG	1 cut(s)	482
DpnI	GATC	3 cut(s)	174, 443, 636
DpnII	GATC	3 cut(s)	172, 441, 634
DrdI	GACNNNNNNGTC	1 cut(s)	400
DseDI	GACNNNNNNGTC	1 cut(s)	400
Eam1104I	CTCTTC	1 cut(s)	591
EarI	CTCTTC	1 cut(s)	591
EciI	GGCGGA	1 cut(s)	365
Eco130I	CCWWGG	2 cut(s)	48, 241
Eco31I	GGTCTC	1 cut(s)	322
Eco72I	CACGTG	1 cut(s)	207
Eco88I	CYCGRG	2 cut(s)	378, 389
EcoNI	CCTNNNNNAGG	1 cut(s)	86
EcoRII	CCWGG	2 cut(s)	331, 419
EcoT14I	CCWWGG	2 cut(s)	48, 241
ErhI	CCWWGG	2 cut(s)	48, 241
FaeI	CATG	1 cut(s)	541
FaiI	YATR	5 cut(s)	138, 217, 224, 429, 539
FalI	AAGNNNNNCTT	2 cut(s)	458, 490
FaqI	GGGAC	3 cut(s)	28, 406, 615
FatI	CATG	1 cut(s)	537
FauI	CCCGC	1 cut(s)	486
Fnu4HI	GCNGC	9 cut(s)	122, 125, 128, 323, 348, 375, 417, 438, 519
Fsp4HI	GCNGC	9 cut(s)	122, 125, 128, 323, 348, 375, 417, 438, 519
FspBI	CTAG	1 cut(s)	528
GlaI	GCGC	1 cut(s)	373
GluI	GCNGC	9 cut(s)	122, 125, 128, 323, 348, 375, 417, 438, 519
GsaI	CCCAGC	1 cut(s)	115
HapII	CCGG	1 cut(s)	36
HhaI	GCGC	1 cut(s)	374
Hin1II	CATG	1 cut(s)	541
Hin6I	GCGC	1 cut(s)	372
HinP1I	GCGC	1 cut(s)	372
HinfI	GANTC	2 cut(s)	355, 589
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	1 cut(s)	560
Hpy166II	GTNNAC	1 cut(s)	44
Hpy188I	TCNGA	3 cut(s)	196, 406, 452
Hpy188III	TCNNGA	4 cut(s)	181, 359, 391, 593
Hpy8I	GTNNAC	1 cut(s)	44
Hpy99I	CGWCG	1 cut(s)	372
HpyAV	CCTTC	1 cut(s)	272
HpyCH4IV	ACGT	3 cut(s)	206, 367, 395
HpyCH4V	TGCA	1 cut(s)	518
HpyF10VI	GCNNNNNNNGC	4 cut(s)	121, 127, 268, 422
HpyF3I	CTNAG	1 cut(s)	482
HpySE526I	ACGT	3 cut(s)	206, 367, 395
Hsp92II	CATG	1 cut(s)	541
HspAI	GCGC	1 cut(s)	372
KspI	CCGCGG	1 cut(s)	100
Kzo9I	GATC	3 cut(s)	172, 441, 634
LmnI	GCTCC	2 cut(s)	52, 135
Lsp1109I	GCAGC	3 cut(s)	139, 428, 530
LweI	GCATC	1 cut(s)	67
MaeI	CTAG	1 cut(s)	528
MaeII	ACGT	3 cut(s)	206, 367, 395
MaeIII	GTNAC	3 cut(s)	200, 359, 562
MalI	GATC	3 cut(s)	174, 443, 636
MboI	GATC	3 cut(s)	172, 441, 634
MboII	GAAGA	4 cut(s)	238, 310, 608, 638
MmeI	TCCRAC	2 cut(s)	182, 384
MnlI	CCTC	9 cut(s)	37, 151, 165, 400, 403, 406, 446, 544, 592
MseI	TTAA	2 cut(s)	618, 661
MspA1I	CMGCKG	1 cut(s)	99
MspI	CCGG	1 cut(s)	36
MspR9I	CCNGG	2 cut(s)	333, 421
Mva1269I	GAATGC	1 cut(s)	31
MvaI	CCWGG	2 cut(s)	333, 421
MvnI	CGCG	4 cut(s)	99, 372, 374, 569
MwoI	GCNNNNNNNGC	4 cut(s)	121, 127, 268, 422
NdeII	GATC	3 cut(s)	172, 441, 634
NlaIII	CATG	1 cut(s)	541
NlaIV	GGNNCC	2 cut(s)	106, 169
NmuCI	GTSAC	2 cut(s)	200, 359
PcsI	WCGNNNNNNNCGW	2 cut(s)	364, 630
PctI	GAATGC	1 cut(s)	31
PfeI	GAWTC	2 cut(s)	355, 589
PflMI	CCANNNNNTGG	1 cut(s)	164
PkrI	GCNGC	9 cut(s)	123, 126, 129, 324, 349, 376, 418, 439, 520
Ple19I	CGATCG	2 cut(s)	444, 637
PmaCI	CACGTG	1 cut(s)	207
PmlI	CACGTG	1 cut(s)	207
Ppu21I	YACGTR	1 cut(s)	207
PshAI	GACNNNNGTC	2 cut(s)	207, 366
Psp6I	CCWGG	2 cut(s)	331, 419
PspCI	CACGTG	1 cut(s)	207
PspFI	CCCAGC	1 cut(s)	111
PspGI	CCWGG	2 cut(s)	331, 419
PspN4I	GGNNCC	2 cut(s)	106, 169
PvuI	CGATCG	2 cut(s)	444, 637
RsaI	GTAC	3 cut(s)	62, 311, 499
RsaNI	GTAC	3 cut(s)	61, 310, 498
SacII	CCGCGG	1 cut(s)	100
SaqAI	TTAA	2 cut(s)	618, 661
SatI	GCNGC	9 cut(s)	122, 125, 128, 323, 348, 375, 417, 438, 519
Sau3AI	GATC	3 cut(s)	172, 441, 634
ScrFI	CCNGG	2 cut(s)	333, 421
SfaNI	GCATC	1 cut(s)	67
Sfr303I	CCGCGG	1 cut(s)	100
SgrBI	CCGCGG	1 cut(s)	100
SspMI	CTAG	1 cut(s)	528
StyD4I	CCNGG	2 cut(s)	331, 419
StyI	CCWWGG	2 cut(s)	48, 241
TaiI	ACGT	3 cut(s)	209, 370, 398
TaqI	TCGA	3 cut(s)	75, 444, 633
TatI	WGTACW	1 cut(s)	309
TauI	GCSGC	6 cut(s)	124, 127, 325, 350, 377, 440
TfiI	GAWTC	2 cut(s)	355, 589
Tru1I	TTAA	2 cut(s)	618, 661
Tru9I	TTAA	2 cut(s)	618, 661
TscAI	CASTG	2 cut(s)	16, 493
TseFI	GTSAC	2 cut(s)	200, 359
TseI	GCWGC	3 cut(s)	127, 416, 518
Tsp45I	GTSAC	2 cut(s)	200, 359
TspDTI	ATGAA	4 cut(s)	239, 311, 573, 635
TspGWI	ACGGA	1 cut(s)	619
TspRI	CASTG	2 cut(s)	16, 493
Van91I	CCANNNNNTGG	1 cut(s)	164
XagI	CCTNNNNNAGG	1 cut(s)	86
XcmI	CCANNNNNNNNNTGG	1 cut(s)	339
XspI	CTAG	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.