Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000568

Physical Location & Seq

Genomic Coordinates Reverse (-)

16534034 .. 16535031

Gene Structure 998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG185400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGCAGTCGCATTCCGGCTGTTTACCCAAGGAGCAGGAGCACGCTGTCATTGTCTCCGCGCTGAAATGGGTAATCCGAGGTGGCACCCAGCCACCACCGCCGCCGCCGCAGCCGCCATCAACGCCTAATTCTGCCACATCGTCACTTCCTCCAACGGGTGGCACCAATCAAGTCGTGATACCATTTTCGGATTGTGTCACGTGTCAGGTATGTAATATGAAGATGGACGATTGCCTTGGCTGTGGTTTGTTCCCGCCAAGCGAGCAAGACAAAGGGAAAGGGAAAAAGATGAAGACGAGCAACTACAGGGGGGTTAGGAAAAGACCAGGGGGCAAATGGGTGGCAGAGATTTGGGACCGGCGTCGAGCGGTTCGGCTTTGGCTTGGGACTTTTCAGACGGCGGAGGAGGCAGCCAGGGCTTATGACACGGCGGCCCTCGAGTTTCGTGGAGCTGACAGAGCTAAGCTAAACTTCCCGCCATCCTCGGACACTGGTTCTACCAGTGGAGCAATGACTGATGATCCAAACAAGCCCAGTCGGAGAGAGCAGCGCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

185

Amino Acids

20.16

Weight (kDa)

9.3

Isoelectric Point (pI)

51.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	100 - 150	9.7e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20350 AT5G67000 AT5G67010
fragaria_vesca	FvH4_1g15960
malus_domestica	MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica	Prupe.7G134100_v2.0.a1
pyrus_communis	pycom02g13800 pycom15g24630
rosa_chinensis	RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata	RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora	Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa	Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha	Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana	Rw1G018940 Rw2G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	83, 161
AccB7I	CCANNNNNTGG	1 cut(s)	158
AccBSI	CCGCTC	1 cut(s)	368
AccII	CGCG	1 cut(s)	59
AclWI	GGATC	1 cut(s)	515
AcvI	CACGTG	1 cut(s)	201
AcyI	GRCGYC	1 cut(s)	361
AfeI	AGCGCT	1 cut(s)	551
AfiI	CCNNNNNNNGG	2 cut(s)	155, 158
AflIII	ACRYGT	1 cut(s)	200
AjnI	CCWGG	2 cut(s)	325, 413
AluBI	AGCT	3 cut(s)	452, 461, 466
AluI	AGCT	3 cut(s)	452, 461, 466
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	1 cut(s)	58
AlwI	GGATC	1 cut(s)	515
Ama87I	CYCGRG	1 cut(s)	437
Aor51HI	AGCGCT	1 cut(s)	551
AoxI	GGCC	1 cut(s)	432
ApeKI	GCWGC	4 cut(s)	109, 410, 547, 552
AspLEI	GCGC	2 cut(s)	61, 552
AspS9I	GGNCC	2 cut(s)	355, 433
AvaI	CYCGRG	1 cut(s)	437
AvaII	GGWCC	1 cut(s)	355
BanI	GGYRCC	2 cut(s)	83, 161
BbrPI	CACGTG	1 cut(s)	201
BbsI	GAAGAC	1 cut(s)	299
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	3 cut(s)	121, 422, 539
BccI	CCATC	3 cut(s)	124, 217, 487
BceAI	ACGGC	2 cut(s)	414, 444
BciT130I	CCWGG	2 cut(s)	327, 415
BcoDI	GTCTC	1 cut(s)	58
BfmI	CTRYAG	1 cut(s)	304
BfoI	RGCGCY	1 cut(s)	553
BisI	GCNGC	9 cut(s)	101, 104, 107, 110, 113, 411, 432, 548, 553
BlpI	GCTNAGC	1 cut(s)	462
BlsI	GCNGC	9 cut(s)	102, 105, 108, 111, 114, 412, 433, 549, 554
Bme1390I	CCNGG	2 cut(s)	327, 415
Bme18I	GGWCC	1 cut(s)	355
BmeT110I	CYCGRG	1 cut(s)	437
BmgT120I	GGNCC	2 cut(s)	355, 433
BmiI	GGNNCC	3 cut(s)	85, 163, 356
BmrFI	CCNGG	2 cut(s)	327, 415
BmrI	ACTGGG	1 cut(s)	528
BmuI	ACTGGG	1 cut(s)	528
BoxI	GACNNNNGTC	1 cut(s)	360
BpiI	GAAGAC	1 cut(s)	299
Bpu1102I	GCTNAGC	1 cut(s)	462
BsaAI	YACGTR	1 cut(s)	201
BsaHI	GRCGYC	1 cut(s)	361
BsaJI	CCNNGG	6 cut(s)	27, 76, 235, 326, 414, 483
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 158
Bse118I	RCCGGY	1 cut(s)	357
Bse1I	ACTGG	3 cut(s)	496, 501, 534
Bse3DI	GCAATG	1 cut(s)	516
BseBI	CCWGG	2 cut(s)	327, 415
BseDI	CCNNGG	6 cut(s)	27, 76, 235, 326, 414, 483
BseGI	GGATG	1 cut(s)	479
BseLI	CCNNNNNNNGG	2 cut(s)	155, 158
BseMI	GCAATG	1 cut(s)	516
BseNI	ACTGG	3 cut(s)	496, 501, 534
BseRI	GAGGAG	1 cut(s)	419
BseXI	GCAGC	3 cut(s)	121, 422, 539
BseYI	CCCAGC	1 cut(s)	87
Bsh1236I	CGCG	1 cut(s)	59
BshFI	GGCC	1 cut(s)	434
BshNI	GGYRCC	2 cut(s)	83, 161
BsiHKAI	GWGCWC	1 cut(s)	42
BsiHKCI	CYCGRG	1 cut(s)	437
BsiSI	CCGG	2 cut(s)	15, 358
BslFI	GGGAC	2 cut(s)	368, 400
BslI	CCNNNNNNNGG	2 cut(s)	155, 158
BsmAI	GTCTC	1 cut(s)	58
BsmFI	GGGAC	2 cut(s)	368, 400
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	434
BsoBI	CYCGRG	1 cut(s)	437
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	1 cut(s)	520
Bsp1720I	GCTNAGC	1 cut(s)	462
BspANI	GGCC	1 cut(s)	434
BspFNI	CGCG	1 cut(s)	59
BspLI	GGNNCC	3 cut(s)	85, 163, 356
BspPI	GGATC	1 cut(s)	515
BspT107I	GGYRCC	2 cut(s)	83, 161
BsrBI	CCGCTC	1 cut(s)	368
BsrDI	GCAATG	1 cut(s)	516
BsrFI	RCCGGY	1 cut(s)	357
BsrI	ACTGG	3 cut(s)	496, 501, 534
BssAI	RCCGGY	1 cut(s)	357
BssECI	CCNNGG	6 cut(s)	27, 76, 235, 326, 414, 483
BssMI	GATC	1 cut(s)	520
BssNI	GRCGYC	1 cut(s)	361
BssT1I	CCWWGG	2 cut(s)	27, 235
Bst2UI	CCWGG	2 cut(s)	327, 415
BstACI	GRCGYC	1 cut(s)	361
BstBAI	YACGTR	1 cut(s)	201
BstC8I	GCNNGC	2 cut(s)	42, 263
BstDEI	CTNAG	1 cut(s)	462
BstF5I	GGATG	1 cut(s)	479
BstFNI	CGCG	1 cut(s)	59
BstH2I	RGCGCY	1 cut(s)	553
BstHHI	GCGC	2 cut(s)	61, 552
BstKTI	GATC	1 cut(s)	523
BstMAI	GTCTC	1 cut(s)	58
BstMBI	GATC	1 cut(s)	520
BstMWI	GCNNNNNNNGC	9 cut(s)	97, 106, 109, 112, 121, 262, 407, 416, 458
BstNI	CCWGG	2 cut(s)	327, 415
BstPAI	GACNNNNGTC	1 cut(s)	360
BstSCI	CCNGG	2 cut(s)	325, 413
BstSFI	CTRYAG	1 cut(s)	304
BstUI	CGCG	1 cut(s)	59
BstV1I	GCAGC	3 cut(s)	121, 422, 539
BstV2I	GAAGAC	1 cut(s)	299
BsuRI	GGCC	1 cut(s)	434
BtsCI	GGATG	1 cut(s)	479
BtsIMutI	CAGTG	2 cut(s)	489, 508
Cac8I	GCNNGC	2 cut(s)	42, 263
CfoI	GCGC	2 cut(s)	61, 552
Cfr10I	RCCGGY	1 cut(s)	357
Cfr13I	GGNCC	2 cut(s)	355, 433
CseI	GACGC	1 cut(s)	350
DdeI	CTNAG	1 cut(s)	462
DpnI	GATC	1 cut(s)	522
DpnII	GATC	1 cut(s)	520
EciI	GGCGGA	1 cut(s)	416
Eco130I	CCWWGG	2 cut(s)	27, 235
Eco47I	GGWCC	1 cut(s)	355
Eco47III	AGCGCT	1 cut(s)	551
Eco72I	CACGTG	1 cut(s)	201
Eco88I	CYCGRG	1 cut(s)	437
EcoRII	CCWGG	2 cut(s)	325, 413
EcoT14I	CCWWGG	2 cut(s)	27, 235
ErhI	CCWWGG	2 cut(s)	27, 235
FaiI	YATR	3 cut(s)	211, 218, 423
FalI	AAGNNNNNCTT	2 cut(s)	455, 487
FaqI	GGGAC	2 cut(s)	368, 400
FauI	CCCGC	2 cut(s)	261, 483
Fnu4HI	GCNGC	9 cut(s)	101, 104, 107, 110, 113, 411, 432, 548, 553
FokI	GGATG	1 cut(s)	466
Fsp4HI	GCNGC	9 cut(s)	101, 104, 107, 110, 113, 411, 432, 548, 553
GlaI	GCGC	2 cut(s)	60, 551
GluI	GCNGC	9 cut(s)	101, 104, 107, 110, 113, 411, 432, 548, 553
GsaI	CCCAGC	1 cut(s)	91
HaeII	RGCGCY	1 cut(s)	553
HaeIII	GGCC	1 cut(s)	434
HapII	CCGG	2 cut(s)	15, 358
HgaI	GACGC	1 cut(s)	350
HhaI	GCGC	2 cut(s)	61, 552
Hin1I	GRCGYC	1 cut(s)	361
Hin6I	GCGC	2 cut(s)	59, 550
HinP1I	GCGC	2 cut(s)	59, 550
HpaII	CCGG	2 cut(s)	15, 358
Hpy166II	GTNNAC	1 cut(s)	23
Hpy188I	TCNGA	5 cut(s)	77, 190, 396, 487, 540
Hpy188III	TCNNGA	1 cut(s)	175
Hpy8I	GTNNAC	1 cut(s)	23
Hpy99I	CGWCG	1 cut(s)	366
HpyCH4IV	ACGT	1 cut(s)	200
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	9 cut(s)	97, 106, 109, 112, 121, 262, 407, 416, 458
HpyF3I	CTNAG	1 cut(s)	462
HpySE526I	ACGT	1 cut(s)	200
Hsp92I	GRCGYC	1 cut(s)	361
HspAI	GCGC	2 cut(s)	59, 550
Kzo9I	GATC	1 cut(s)	520
LmnI	GCTCC	4 cut(s)	31, 37, 449, 506
Lsp1109I	GCAGC	3 cut(s)	121, 422, 539
MaeII	ACGT	1 cut(s)	200
MaeIII	GTNAC	2 cut(s)	141, 196
MalI	GATC	1 cut(s)	522
MbiI	CCGCTC	1 cut(s)	368
MboI	GATC	1 cut(s)	520
MboII	GAAGA	2 cut(s)	232, 304
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	1 cut(s)	127
MmeI	TCCRAC	2 cut(s)	176, 518
MnlI	CCTC	6 cut(s)	71, 159, 397, 400, 446, 493
MspI	CCGG	2 cut(s)	15, 358
MspR9I	CCNGG	2 cut(s)	327, 415
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	2 cut(s)	327, 415
MvnI	CGCG	1 cut(s)	59
MwoI	GCNNNNNNNGC	9 cut(s)	97, 106, 109, 112, 121, 262, 407, 416, 458
NdeII	GATC	1 cut(s)	520
NlaIV	GGNNCC	3 cut(s)	85, 163, 356
NmuCI	GTSAC	2 cut(s)	141, 196
PaeR7I	CTCGAG	1 cut(s)	437
PctI	GAATGC	1 cut(s)	10
PflMI	CCANNNNNTGG	1 cut(s)	158
PkrI	GCNGC	9 cut(s)	102, 105, 108, 111, 114, 412, 433, 549, 554
PmaCI	CACGTG	1 cut(s)	201
PmlI	CACGTG	1 cut(s)	201
Ppu21I	YACGTR	1 cut(s)	201
PshAI	GACNNNNGTC	1 cut(s)	360
Psp6I	CCWGG	2 cut(s)	325, 413
PspCI	CACGTG	1 cut(s)	201
PspFI	CCCAGC	1 cut(s)	87
PspGI	CCWGG	2 cut(s)	325, 413
PspN4I	GGNNCC	3 cut(s)	85, 163, 356
PspPI	GGNCC	2 cut(s)	355, 433
PspXI	VCTCGAGB	1 cut(s)	437
SatI	GCNGC	9 cut(s)	101, 104, 107, 110, 113, 411, 432, 548, 553
Sau3AI	GATC	1 cut(s)	520
Sau96I	GGNCC	2 cut(s)	355, 433
ScrFI	CCNGG	2 cut(s)	327, 415
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	6 cut(s)	82, 203, 210, 454, 463, 468
SfcI	CTRYAG	1 cut(s)	304
Sfr274I	CTCGAG	1 cut(s)	437
SinI	GGWCC	1 cut(s)	355
SlaI	CTCGAG	1 cut(s)	437
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
Sse9I	AATT	1 cut(s)	127
StyD4I	CCNGG	2 cut(s)	325, 413
StyI	CCWWGG	2 cut(s)	27, 235
TaiI	ACGT	1 cut(s)	203
TaqI	TCGA	2 cut(s)	364, 438
TasI	AATT	1 cut(s)	127
TauI	GCSGC	5 cut(s)	103, 106, 109, 115, 434
TscAI	CASTG	2 cut(s)	496, 508
TseFI	GTSAC	2 cut(s)	141, 196
TseI	GCWGC	4 cut(s)	109, 410, 547, 552
Tsp45I	GTSAC	2 cut(s)	141, 196
TspDTI	ATGAA	2 cut(s)	233, 305
TspRI	CASTG	2 cut(s)	496, 508
Van91I	CCANNNNNTGG	1 cut(s)	158
VpaK11BI	GGWCC	1 cut(s)	355
XcmI	CCANNNNNNNNNTGG	1 cut(s)	333
XhoI	CTCGAG	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.