Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000568

Physical Location & Seq

Genomic Coordinates Reverse (-)

16708766 .. 16709110

Gene Structure 345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47963

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGAAAGCAGTGGGACTAAAATGCCCTCGCATTCCGGCGGTTTACCCAAGAAGCAGGAGCACGCTATCATTGTCGAAGCCCTGAAACAGGTAGTCCGCGGTGGCACCACCCAGTCACCGCCGCCGCAGCTCCATTATGCCTCATCATCACTTCCTCCAACGGGTGGCACAAATCAAGTCGTGATACCTTTTTCGGATTGTGACATGTGTCAGGTATGTAATATGAAGATGGACGATTGCCTTGGCTGTGGTTTGTTCCGGCCAAGCGAGCAAGACGAAGGGAAAGGGAAAAAGATGAAGACGAGCAAGTACAGGGGAGTGCGGCAGAGACCAGGGGGAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

114

Amino Acids

12.28

Weight (kDa)

9.22

Isoelectric Point (pI)

65.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20350 AT5G67000 AT5G67010
fragaria_vesca	FvH4_1g15960
malus_domestica	MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica	Prupe.7G134100_v2.0.a1
pyrus_communis	pycom02g13800 pycom15g24630
rosa_chinensis	RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata	RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora	Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa	Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha	Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana	Rw1G018940 Rw2G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	104
AccB7I	CCANNNNNTGG	1 cut(s)	164
AccII	CGCG	1 cut(s)	99
AciI	CCGC	7 cut(s)	39, 97, 99, 119, 122, 125, 322
AcoI	YGGCCR	1 cut(s)	260
AfaI	GTAC	1 cut(s)	311
AfiI	CCNNNNNNNGG	3 cut(s)	88, 161, 164
AflIII	ACRYGT	1 cut(s)	204
AjnI	CCWGG	1 cut(s)	331
AluBI	AGCT	1 cut(s)	130
AluI	AGCT	1 cut(s)	130
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	1 cut(s)	322
AoxI	GGCC	1 cut(s)	260
ApeKI	GCWGC	1 cut(s)	127
AsuHPI	GGTGA	1 cut(s)	108
BanI	GGYRCC	1 cut(s)	104
BbsI	GAAGAC	1 cut(s)	305
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	1 cut(s)	139
BccI	CCATC	1 cut(s)	223
BciT130I	CCWGG	1 cut(s)	333
BcoDI	GTCTC	1 cut(s)	322
BisI	GCNGC	4 cut(s)	122, 125, 128, 323
BlsI	GCNGC	4 cut(s)	123, 126, 129, 324
Bme1390I	CCNGG	1 cut(s)	333
BmiI	GGNNCC	1 cut(s)	106
BmrFI	CCNGG	1 cut(s)	333
BmrI	ACTGGG	1 cut(s)	106
BmuI	ACTGGG	1 cut(s)	106
BoxI	GACNNNNGTC	1 cut(s)	207
BpiI	GAAGAC	1 cut(s)	305
BsaI	GGTCTC	1 cut(s)	322
BsaJI	CCNNGG	3 cut(s)	97, 241, 332
Bsc4I	CCNNNNNNNGG	3 cut(s)	88, 161, 164
Bse1I	ACTGG	1 cut(s)	112
BseBI	CCWGG	1 cut(s)	333
BseDI	CCNNGG	3 cut(s)	97, 241, 332
BseLI	CCNNNNNNNGG	3 cut(s)	88, 161, 164
BseNI	ACTGG	1 cut(s)	112
BseXI	GCAGC	1 cut(s)	139
Bsh1236I	CGCG	1 cut(s)	99
BshFI	GGCC	1 cut(s)	262
BshNI	GGYRCC	1 cut(s)	104
BsiHKAI	GWGCWC	1 cut(s)	63
BsiSI	CCGG	2 cut(s)	36, 259
BslFI	GGGAC	1 cut(s)	28
BslI	CCNNNNNNNGG	3 cut(s)	88, 161, 164
BsmAI	GTCTC	1 cut(s)	322
BsmFI	GGGAC	1 cut(s)	28
BsmI	GAATGC	1 cut(s)	31
BsnI	GGCC	1 cut(s)	262
Bso31I	GGTCTC	1 cut(s)	322
Bsp1286I	GDGCHC	1 cut(s)	63
BspACI	CCGC	7 cut(s)	39, 97, 99, 119, 122, 125, 322
BspANI	GGCC	1 cut(s)	262
BspFNI	CGCG	1 cut(s)	99
BspLI	GGNNCC	1 cut(s)	106
BspT107I	GGYRCC	1 cut(s)	104
BspTNI	GGTCTC	1 cut(s)	322
BsrI	ACTGG	1 cut(s)	112
BssECI	CCNNGG	3 cut(s)	97, 241, 332
BssT1I	CCWWGG	1 cut(s)	241
Bst2UI	CCWGG	1 cut(s)	333
BstC8I	GCNNGC	2 cut(s)	63, 269
BstDSI	CCRYGG	1 cut(s)	97
BstENI	CCTNNNNNAGG	1 cut(s)	86
BstFNI	CGCG	1 cut(s)	99
BstMAI	GTCTC	1 cut(s)	322
BstMWI	GCNNNNNNNGC	2 cut(s)	127, 268
BstNI	CCWGG	1 cut(s)	333
BstNSI	RCATGY	1 cut(s)	208
BstPAI	GACNNNNGTC	1 cut(s)	207
BstSCI	CCNGG	1 cut(s)	331
BstUI	CGCG	1 cut(s)	99
BstV1I	GCAGC	1 cut(s)	139
BstV2I	GAAGAC	1 cut(s)	305
BsuRI	GGCC	1 cut(s)	262
BtgI	CCRYGG	1 cut(s)	97
BtsI	GCAGTG	1 cut(s)	16
BtsIMutI	CAGTG	1 cut(s)	16
Cac8I	GCNNGC	2 cut(s)	63, 269
Cfr42I	CCGCGG	1 cut(s)	100
Csp6I	GTAC	1 cut(s)	310
CviAII	CATG	1 cut(s)	205
CviJI	RGCY	4 cut(s)	80, 130, 246, 262
CviKI_1	RGCY	4 cut(s)	80, 130, 246, 262
CviQI	GTAC	1 cut(s)	310
EaeI	YGGCCR	1 cut(s)	260
Eco130I	CCWWGG	1 cut(s)	241
Eco31I	GGTCTC	1 cut(s)	322
EcoNI	CCTNNNNNAGG	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	331
EcoT14I	CCWWGG	1 cut(s)	241
ErhI	CCWWGG	1 cut(s)	241
FaeI	CATG	1 cut(s)	208
FaiI	YATR	4 cut(s)	138, 206, 217, 224
FaqI	GGGAC	1 cut(s)	28
FatI	CATG	1 cut(s)	204
Fnu4HI	GCNGC	4 cut(s)	122, 125, 128, 323
Fsp4HI	GCNGC	4 cut(s)	122, 125, 128, 323
GluI	GCNGC	4 cut(s)	122, 125, 128, 323
HaeIII	GGCC	1 cut(s)	262
HapII	CCGG	2 cut(s)	36, 259
Hin1II	CATG	1 cut(s)	208
HpaII	CCGG	2 cut(s)	36, 259
HphI	GGTGA	1 cut(s)	108
Hpy166II	GTNNAC	1 cut(s)	44
Hpy188I	TCNGA	1 cut(s)	196
Hpy188III	TCNNGA	1 cut(s)	181
Hpy8I	GTNNAC	1 cut(s)	44
HpyAV	CCTTC	1 cut(s)	272
HpyF10VI	GCNNNNNNNGC	2 cut(s)	127, 268
Hsp92II	CATG	1 cut(s)	208
KspI	CCGCGG	1 cut(s)	100
LmnI	GCTCC	2 cut(s)	58, 135
LpnPI	CCDG	9 cut(s)	41, 49, 74, 95, 125, 197, 272, 298, 318
Lsp1109I	GCAGC	1 cut(s)	139
MaeIII	GTNAC	2 cut(s)	114, 200
MboII	GAAGA	2 cut(s)	238, 310
MhlI	GDGCHC	1 cut(s)	63
MmeI	TCCRAC	1 cut(s)	182
MnlI	CCTC	3 cut(s)	37, 151, 165
MspA1I	CMGCKG	1 cut(s)	99
MspI	CCGG	2 cut(s)	36, 259
MspR9I	CCNGG	1 cut(s)	333
Mva1269I	GAATGC	1 cut(s)	31
MvaI	CCWGG	1 cut(s)	333
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	2 cut(s)	127, 268
NlaIII	CATG	1 cut(s)	208
NlaIV	GGNNCC	1 cut(s)	106
NmuCI	GTSAC	2 cut(s)	114, 200
NspI	RCATGY	1 cut(s)	208
PciI	ACATGT	1 cut(s)	204
PctI	GAATGC	1 cut(s)	31
PflMI	CCANNNNNTGG	1 cut(s)	164
PkrI	GCNGC	4 cut(s)	123, 126, 129, 324
PscI	ACATGT	1 cut(s)	204
PshAI	GACNNNNGTC	1 cut(s)	207
Psp6I	CCWGG	1 cut(s)	331
PspGI	CCWGG	1 cut(s)	331
PspN4I	GGNNCC	1 cut(s)	106
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
SacII	CCGCGG	1 cut(s)	100
SatI	GCNGC	4 cut(s)	122, 125, 128, 323
ScrFI	CCNGG	1 cut(s)	333
SduI	GDGCHC	1 cut(s)	63
SetI	ASST	4 cut(s)	93, 132, 190, 216
Sfr303I	CCGCGG	1 cut(s)	100
SgrBI	CCGCGG	1 cut(s)	100
SsiI	CCGC	7 cut(s)	39, 97, 99, 119, 122, 125, 322
StyD4I	CCNGG	1 cut(s)	331
StyI	CCWWGG	1 cut(s)	241
TaqI	TCGA	1 cut(s)	75
TatI	WGTACW	1 cut(s)	309
TauI	GCSGC	3 cut(s)	124, 127, 325
TscAI	CASTG	1 cut(s)	16
TseFI	GTSAC	2 cut(s)	114, 200
TseI	GCWGC	1 cut(s)	127
Tsp45I	GTSAC	2 cut(s)	114, 200
TspDTI	ATGAA	2 cut(s)	239, 311
TspRI	CASTG	1 cut(s)	16
Van91I	CCANNNNNTGG	1 cut(s)	164
XagI	CCTNNNNNAGG	1 cut(s)	86
XceI	RCATGY	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.