Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000568

Physical Location & Seq

Genomic Coordinates Reverse (-)

16736095 .. 16736736

Gene Structure 642 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47967

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGTGGATTTCTTCTTCCCAGCTACGCTCGGACTCGAAAATGAAAAGCAATGGGACTGAAATGCCCTCGCATTCCGGCGGTTTACCCAAGGAGCAGGAGCACGCTATCATTGTCTCCGCCCTGAAACGGGTAATCCGCGGTGGCGTTGGCACAAACAATGCACCCTCCCAGCCACCGCCGCCGCCGACGCAGCTCCCAGAAACGGGTGGCACCGATCAAATTGTGATACCATTTTCGGATTGTGATGACACGTGTCAGGTATGTAATATGGAGATGGATCGTTGCCTTGGCTGTGGTTTGTTCCCTCCAAGGGAGCAAGACAAAGGTAAAAAGGTGAAGACGAGCAAGTACAGGGGAGTGCGGCAGAGACCAGGAGGAAAATGGGCGGCGGAGATTCGGGACCCCCGTCGCTCGGTTCGCGTTTGGCTCGGGACTTTCCAGAGGGAGGAGGAGGCAGCCAGGGCTTATGACACGAAGGCCATGGAATTTCGCGGAGCTGACAGAGCCAAGCTAAACTTCCCGCCATCCTCGGACACCGGTACTACCAGTGGAGCAATGACTGATGAGACCAAAGTCCAAACAAGTCCAGTTGGAGAGAGCAGCACTGCTGAGGAAGAAGAAGAGGAAGAGATGGATCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

213

Amino Acids

23.45

Weight (kDa)

5.61

Isoelectric Point (pI)

54.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	115 - 165	2e-11	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20350 AT5G67000 AT5G67010
fragaria_vesca	FvH4_1g15960
malus_domestica	MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica	Prupe.7G134100_v2.0.a1
pyrus_communis	pycom02g13800 pycom15g24630
rosa_chinensis	RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata	RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora	Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa	Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha	Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana	Rw1G018940 Rw2G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	209
AccII	CGCG	3 cut(s)	138, 420, 492
AclWI	GGATC	1 cut(s)	285
AcsI	RAATTY	1 cut(s)	485
AcvI	CACGTG	1 cut(s)	252
AfaI	GTAC	2 cut(s)	350, 541
AfiI	CCNNNNNNNGG	7 cut(s)	126, 127, 202, 203, 310, 412, 445
AflIII	ACRYGT	2 cut(s)	249, 251
AgeI	ACCGGT	1 cut(s)	536
AjnI	CCWGG	2 cut(s)	370, 458
AjuI	GAANNNNNNNTTGG	2 cut(s)	500, 532
AluBI	AGCT	4 cut(s)	22, 193, 497, 511
AluI	AGCT	4 cut(s)	22, 193, 497, 511
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	3 cut(s)	118, 361, 560
AlwI	GGATC	1 cut(s)	285
Ama87I	CYCGRG	1 cut(s)	428
AoxI	GGCC	1 cut(s)	477
ApeKI	GCWGC	3 cut(s)	190, 455, 600
ApoI	RAATTY	1 cut(s)	485
AsiGI	ACCGGT	1 cut(s)	536
AspS9I	GGNCC	1 cut(s)	400
AsuHPI	GGTGA	1 cut(s)	346
AvaI	CYCGRG	1 cut(s)	428
AvaII	GGWCC	1 cut(s)	400
BanI	GGYRCC	1 cut(s)	209
BbrPI	CACGTG	1 cut(s)	252
BbsI	GAAGAC	1 cut(s)	344
Bbv12I	GWGCWC	1 cut(s)	102
BbvCI	CCTCAGC	1 cut(s)	609
BbvI	GCAGC	3 cut(s)	202, 467, 612
BccI	CCATC	3 cut(s)	268, 532, 625
BciT130I	CCWGG	2 cut(s)	372, 460
BcoDI	GTCTC	3 cut(s)	118, 361, 560
BisI	GCNGC	7 cut(s)	179, 182, 191, 362, 387, 456, 601
BlsI	GCNGC	7 cut(s)	180, 183, 192, 363, 388, 457, 602
Bme1390I	CCNGG	2 cut(s)	372, 460
Bme18I	GGWCC	1 cut(s)	400
BmeT110I	CYCGRG	1 cut(s)	428
BmgT120I	GGNCC	1 cut(s)	400
BmiI	GGNNCC	3 cut(s)	211, 401, 402
BmrFI	CCNGG	2 cut(s)	372, 460
BoxI	GACNNNNGTC	3 cut(s)	252, 405, 572
BpiI	GAAGAC	1 cut(s)	344
Bpu10I	CCTNAGC	1 cut(s)	609
BsaAI	YACGTR	1 cut(s)	252
BsaI	GGTCTC	2 cut(s)	361, 560
BsaJI	CCNNGG	7 cut(s)	87, 136, 286, 308, 459, 480, 528
BsaWI	WCCGGW	1 cut(s)	536
Bsc4I	CCNNNNNNNGG	7 cut(s)	126, 127, 202, 203, 310, 412, 445
Bse118I	RCCGGY	1 cut(s)	536
Bse1I	ACTGG	2 cut(s)	546, 587
Bse3DI	GCAATG	2 cut(s)	55, 561
BseBI	CCWGG	2 cut(s)	372, 460
BseDI	CCNNGG	7 cut(s)	87, 136, 286, 308, 459, 480, 528
BseGI	GGATG	1 cut(s)	524
BseLI	CCNNNNNNNGG	7 cut(s)	126, 127, 202, 203, 310, 412, 445
BseMI	GCAATG	2 cut(s)	55, 561
BseMII	CTCAG	1 cut(s)	600
BseNI	ACTGG	2 cut(s)	546, 587
BseRI	GAGGAG	2 cut(s)	461, 464
BseXI	GCAGC	3 cut(s)	202, 467, 612
BseYI	CCCAGC	2 cut(s)	18, 168
Bsh1236I	CGCG	3 cut(s)	138, 420, 492
BshFI	GGCC	1 cut(s)	479
BshNI	GGYRCC	1 cut(s)	209
BshTI	ACCGGT	1 cut(s)	536
BsiHKAI	GWGCWC	1 cut(s)	102
BsiHKCI	CYCGRG	1 cut(s)	428
BsiSI	CCGG	2 cut(s)	75, 537
BslFI	GGGAC	3 cut(s)	67, 413, 445
BslI	CCNNNNNNNGG	7 cut(s)	126, 127, 202, 203, 310, 412, 445
BsmAI	GTCTC	3 cut(s)	118, 361, 560
BsmFI	GGGAC	3 cut(s)	67, 413, 445
BsmI	GAATGC	1 cut(s)	70
BsnI	GGCC	1 cut(s)	479
Bso31I	GGTCTC	2 cut(s)	361, 560
BsoBI	CYCGRG	1 cut(s)	428
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp143I	GATC	3 cut(s)	214, 277, 634
Bsp19I	CCATGG	1 cut(s)	480
BspANI	GGCC	1 cut(s)	479
BspCNI	CTCAG	1 cut(s)	601
BspFNI	CGCG	3 cut(s)	138, 420, 492
BspLI	GGNNCC	3 cut(s)	211, 401, 402
BspPI	GGATC	1 cut(s)	285
BspT107I	GGYRCC	1 cut(s)	209
BspTNI	GGTCTC	2 cut(s)	361, 560
BsrDI	GCAATG	2 cut(s)	55, 561
BsrFI	RCCGGY	1 cut(s)	536
BsrI	ACTGG	2 cut(s)	546, 587
BssAI	RCCGGY	1 cut(s)	536
BssECI	CCNNGG	7 cut(s)	87, 136, 286, 308, 459, 480, 528
BssMI	GATC	3 cut(s)	214, 277, 634
BssT1I	CCWWGG	4 cut(s)	87, 286, 308, 480
Bst2UI	CCWGG	2 cut(s)	372, 460
Bst6I	CTCTTC	2 cut(s)	615, 621
BstBAI	YACGTR	1 cut(s)	252
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	1 cut(s)	609
BstDSI	CCRYGG	2 cut(s)	136, 480
BstF5I	GGATG	1 cut(s)	524
BstFNI	CGCG	3 cut(s)	138, 420, 492
BstKTI	GATC	3 cut(s)	217, 280, 637
BstMAI	GTCTC	3 cut(s)	118, 361, 560
BstMBI	GATC	3 cut(s)	214, 277, 634
BstMWI	GCNNNNNNNGC	6 cut(s)	178, 187, 190, 417, 461, 503
BstNI	CCWGG	2 cut(s)	372, 460
BstPAI	GACNNNNGTC	3 cut(s)	252, 405, 572
BstSCI	CCNGG	2 cut(s)	370, 458
BstUI	CGCG	3 cut(s)	138, 420, 492
BstV1I	GCAGC	3 cut(s)	202, 467, 612
BstV2I	GAAGAC	1 cut(s)	344
BsuRI	GGCC	1 cut(s)	479
BtgI	CCRYGG	2 cut(s)	136, 480
BtsCI	GGATG	1 cut(s)	524
BtsI	GCAGTG	1 cut(s)	603
BtsIMutI	CAGTG	2 cut(s)	553, 603
Cac8I	GCNNGC	1 cut(s)	102
Cfr10I	RCCGGY	1 cut(s)	536
Cfr13I	GGNCC	1 cut(s)	400
Cfr42I	CCGCGG	1 cut(s)	139
CseI	GACGC	1 cut(s)	196
Csp6I	GTAC	2 cut(s)	349, 540
CspAI	ACCGGT	1 cut(s)	536
CviAII	CATG	1 cut(s)	481
CviQI	GTAC	2 cut(s)	349, 540
DdeI	CTNAG	1 cut(s)	609
DpnI	GATC	3 cut(s)	216, 279, 636
DpnII	GATC	3 cut(s)	214, 277, 634
Eam1104I	CTCTTC	2 cut(s)	615, 621
EarI	CTCTTC	2 cut(s)	615, 621
EciI	GGCGGA	2 cut(s)	106, 404
Eco130I	CCWWGG	4 cut(s)	87, 286, 308, 480
Eco31I	GGTCTC	2 cut(s)	361, 560
Eco47I	GGWCC	1 cut(s)	400
Eco72I	CACGTG	1 cut(s)	252
Eco88I	CYCGRG	1 cut(s)	428
EcoO109I	RGGNCCY	1 cut(s)	400
EcoRII	CCWGG	2 cut(s)	370, 458
EcoT14I	CCWWGG	4 cut(s)	87, 286, 308, 480
ErhI	CCWWGG	4 cut(s)	87, 286, 308, 480
FaeI	CATG	1 cut(s)	484
FaiI	YATR	4 cut(s)	262, 269, 468, 482
FalI	AAGNNNNNCTT	2 cut(s)	500, 532
FaqI	GGGAC	3 cut(s)	67, 413, 445
FatI	CATG	1 cut(s)	480
FauI	CCCGC	1 cut(s)	528
Fnu4HI	GCNGC	7 cut(s)	179, 182, 191, 362, 387, 456, 601
FokI	GGATG	1 cut(s)	511
Fsp4HI	GCNGC	7 cut(s)	179, 182, 191, 362, 387, 456, 601
GluI	GCNGC	7 cut(s)	179, 182, 191, 362, 387, 456, 601
GsaI	CCCAGC	2 cut(s)	22, 172
HaeIII	GGCC	1 cut(s)	479
HapII	CCGG	2 cut(s)	75, 537
HgaI	GACGC	1 cut(s)	196
Hin1II	CATG	1 cut(s)	484
HinfI	GANTC	2 cut(s)	32, 394
HpaII	CCGG	2 cut(s)	75, 537
HphI	GGTGA	1 cut(s)	346
Hpy166II	GTNNAC	1 cut(s)	83
Hpy188I	TCNGA	3 cut(s)	31, 238, 532
Hpy188III	TCNNGA	3 cut(s)	398, 430, 439
Hpy8I	GTNNAC	1 cut(s)	83
Hpy99I	CGWCG	2 cut(s)	190, 411
HpyAV	CCTTC	1 cut(s)	469
HpyCH4IV	ACGT	1 cut(s)	251
HpyCH4V	TGCA	1 cut(s)	161
HpyF10VI	GCNNNNNNNGC	6 cut(s)	178, 187, 190, 417, 461, 503
HpyF3I	CTNAG	1 cut(s)	609
HpySE526I	ACGT	1 cut(s)	251
Hsp92II	CATG	1 cut(s)	484
KflI	GGGWCCC	1 cut(s)	400
KspI	CCGCGG	1 cut(s)	139
Kzo9I	GATC	3 cut(s)	214, 277, 634
LmnI	GCTCC	6 cut(s)	91, 97, 198, 313, 494, 551
Lsp1109I	GCAGC	3 cut(s)	202, 467, 612
MaeII	ACGT	1 cut(s)	251
MalI	GATC	3 cut(s)	216, 279, 636
MboI	GATC	3 cut(s)	214, 277, 634
MboII	GAAGA	7 cut(s)	3, 6, 349, 626, 629, 632, 638
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	2 cut(s)	219, 485
MlyI	GAGTC	1 cut(s)	26
MmeI	TCCRAC	1 cut(s)	571
MspA1I	CMGCKG	1 cut(s)	138
MspI	CCGG	2 cut(s)	75, 537
MspR9I	CCNGG	2 cut(s)	372, 460
Mva1269I	GAATGC	1 cut(s)	70
MvaI	CCWGG	2 cut(s)	372, 460
MvnI	CGCG	3 cut(s)	138, 420, 492
MwoI	GCNNNNNNNGC	6 cut(s)	178, 187, 190, 417, 461, 503
NcoI	CCATGG	1 cut(s)	480
NdeII	GATC	3 cut(s)	214, 277, 634
NlaIII	CATG	1 cut(s)	484
NlaIV	GGNNCC	3 cut(s)	211, 401, 402
PcsI	WCGNNNNNNNCGW	1 cut(s)	403
PctI	GAATGC	1 cut(s)	70
PfeI	GAWTC	1 cut(s)	394
PinAI	ACCGGT	1 cut(s)	536
PkrI	GCNGC	7 cut(s)	180, 183, 192, 363, 388, 457, 602
PleI	GAGTC	1 cut(s)	26
PmaCI	CACGTG	1 cut(s)	252
PmlI	CACGTG	1 cut(s)	252
PpsI	GAGTC	1 cut(s)	26
Ppu21I	YACGTR	1 cut(s)	252
PpuMI	RGGWCCY	1 cut(s)	400
PshAI	GACNNNNGTC	3 cut(s)	252, 405, 572
Psp5II	RGGWCCY	1 cut(s)	400
Psp6I	CCWGG	2 cut(s)	370, 458
PspCI	CACGTG	1 cut(s)	252
PspFI	CCCAGC	2 cut(s)	18, 168
PspGI	CCWGG	2 cut(s)	370, 458
PspN4I	GGNNCC	3 cut(s)	211, 401, 402
PspPI	GGNCC	1 cut(s)	400
PspPPI	RGGWCCY	1 cut(s)	400
RsaI	GTAC	2 cut(s)	350, 541
RsaNI	GTAC	2 cut(s)	349, 540
SacII	CCGCGG	1 cut(s)	139
SatI	GCNGC	7 cut(s)	179, 182, 191, 362, 387, 456, 601
Sau3AI	GATC	3 cut(s)	214, 277, 634
Sau96I	GGNCC	1 cut(s)	400
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	2 cut(s)	372, 460
SduI	GDGCHC	1 cut(s)	102
SetI	ASST	8 cut(s)	24, 195, 254, 261, 328, 336, 499, 513
Sfr303I	CCGCGG	1 cut(s)	139
SgrBI	CCGCGG	1 cut(s)	139
SinI	GGWCC	1 cut(s)	400
Sse9I	AATT	2 cut(s)	219, 485
StyD4I	CCNGG	2 cut(s)	370, 458
StyI	CCWWGG	4 cut(s)	87, 286, 308, 480
TaiI	ACGT	1 cut(s)	254
TaqI	TCGA	1 cut(s)	35
TasI	AATT	2 cut(s)	219, 485
TatI	WGTACW	1 cut(s)	348
TauI	GCSGC	4 cut(s)	181, 184, 364, 389
TfiI	GAWTC	1 cut(s)	394
TscAI	CASTG	2 cut(s)	553, 610
TseI	GCWGC	3 cut(s)	190, 455, 600
TspDTI	ATGAA	1 cut(s)	56
TspRI	CASTG	2 cut(s)	553, 610
VpaK11BI	GGWCC	1 cut(s)	400
XapI	RAATTY	1 cut(s)	485
XcmI	CCANNNNNNNNNTGG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.