AT5G67000

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000568
Physical Location & Seq
Reverse (-)
26746677 .. 26747281
605 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G67000.1

Sequence Viewer

Length: 555 bp
ATGCTCACTCCCTTTTGTTCTTCACACCATTTGCAGGAAAAAATGAATAGTTGTCAGTCTAATCCCACCAAAATGGATAATTCAGAAAATGTTCTATTTAATGATCAAAACGAAAATTTCACACTTGTTGCACCACACCCTTCTTCTTCGTACTTGACAAGAGATCAAGAGCACGAGATCATGGTCTCTGCTCTGCGACAAGTGATATCTAACTCCGGAGCTGACGACGCGTCATCATCAAACTTGATCATCACAAGCGTTCCGCCTCCAGACGCTGGCCCTTGTCCTCTCTGTGGCGTCGCCGGTTGCTACGGCTGCACATTACAACGGCCGCACCGAGAGGTAAAGAAGGAGAAGAAATACAAAGGAGTAAGGAAAAAACCATCGGGTAAATGGGCGGCGGAGATATGGGATCCGAGATCGAAATCAAGGAGGTGGCTTGGAACGTTTCTTACGGCGGAGATGGCGGCACAATCTTACAATGATGCGGCGGCTGAGTATCGAGCAAGACGTGGTAAAACAAACGGAGAAGGAATTAAACGGCGGTGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

184

Amino Acids

20.61

Weight (kDa)

9.3

Isoelectric Point (pI)

57.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000568)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20350 AT5G67000 AT5G67010
fragaria_vesca FvH4_1g15960
malus_domestica MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica Prupe.7G134100_v2.0.a1
pyrus_communis pycom02g13800 pycom15g24630
rosa_chinensis RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana Rw1G018940 Rw2G014050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 275
AccII CGCG 1 cut(s) 230
AccIII TCCGGA 1 cut(s) 215
AciI CCGC 9 cut(s) 263, 332, 398, 401, 458, 467, 488, 491, 544
AclI AACGTT 1 cut(s) 446
AclWI GGATC 2 cut(s) 407, 420
AcoI YGGCCR 1 cut(s) 329
AcsI RAATTY 1 cut(s) 115
AcyI GRCGYC 1 cut(s) 297
AfaI GTAC 1 cut(s) 152
AfiI CCNNNNNNNGG 3 cut(s) 34, 275, 293
AflIII ACRYGT 1 cut(s) 228
AhdI GACNNNNNGTC 1 cut(s) 229
AjiI CACGTC 1 cut(s) 512
AluBI AGCT 1 cut(s) 221
AluI AGCT 1 cut(s) 221
Alw21I GWGCWC 1 cut(s) 174
Alw26I GTCTC 1 cut(s) 190
AlwI GGATC 2 cut(s) 407, 420
AlwNI CAGNNNCTG 1 cut(s) 275
Aor13HI TCCGGA 1 cut(s) 215
AoxI GGCC 2 cut(s) 277, 329
ApeKI GCWGC 1 cut(s) 315
ApoI RAATTY 1 cut(s) 115
Asp700I GAANNNNTTC 1 cut(s) 90
AspS9I GGNCC 1 cut(s) 278
BamHI GGATCC 1 cut(s) 412
BauI CACGAG 1 cut(s) 173
Bbv12I GWGCWC 1 cut(s) 174
BbvI GCAGC 1 cut(s) 302
BccI CCATC 2 cut(s) 391, 457
BceAI ACGGC 3 cut(s) 328, 344, 471
BclI TGATCA 2 cut(s) 103, 246
BcoDI GTCTC 1 cut(s) 190
BisI GCNGC 6 cut(s) 316, 332, 399, 468, 489, 492
BlsI GCNGC 6 cut(s) 317, 333, 400, 469, 490, 493
BmeRI GACNNNNNGTC 1 cut(s) 229
BmgBI CACGTC 1 cut(s) 512
BmgT120I GGNCC 1 cut(s) 278
BmiI GGNNCC 1 cut(s) 414
BmsI GCATC 1 cut(s) 475
BpmI CTGGAG 1 cut(s) 252
BsaBI GATNNNNATC 1 cut(s) 424
BsaHI GRCGYC 1 cut(s) 297
BsaI GGTCTC 1 cut(s) 190
BsaWI WCCGGW 1 cut(s) 215
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 275, 293
Bse118I RCCGGY 1 cut(s) 302
Bse8I GATNNNNATC 1 cut(s) 424
BseAI TCCGGA 1 cut(s) 215
BseJI GATNNNNATC 1 cut(s) 424
BseLI CCNNNNNNNGG 3 cut(s) 34, 275, 293
BseMII CTCAG 1 cut(s) 486
BseX3I CGGCCG 1 cut(s) 329
BseXI GCAGC 1 cut(s) 302
BsgI GTGCAG 1 cut(s) 301
Bsh1236I CGCG 1 cut(s) 230
Bsh1285I CGRYCG 1 cut(s) 332
BshFI GGCC 2 cut(s) 279, 331
BsiEI CGRYCG 1 cut(s) 332
BsiHKAI GWGCWC 1 cut(s) 174
BsiSI CCGG 2 cut(s) 216, 303
BslI CCNNNNNNNGG 3 cut(s) 34, 275, 293
BsmAI GTCTC 1 cut(s) 190
BsnI GGCC 2 cut(s) 279, 331
Bso31I GGTCTC 1 cut(s) 190
Bsp1286I GDGCHC 1 cut(s) 174
Bsp13I TCCGGA 1 cut(s) 215
Bsp143I GATC 6 cut(s) 103, 163, 177, 246, 412, 419
BspACI CCGC 9 cut(s) 263, 332, 398, 401, 458, 467, 488, 491, 544
BspANI GGCC 2 cut(s) 279, 331
BspCNI CTCAG 1 cut(s) 487
BspEI TCCGGA 1 cut(s) 215
BspFNI CGCG 1 cut(s) 230
BspLI GGNNCC 1 cut(s) 414
BspPI GGATC 2 cut(s) 407, 420
BspTNI GGTCTC 1 cut(s) 190
BsrFI RCCGGY 1 cut(s) 302
BssAI RCCGGY 1 cut(s) 302
BssMI GATC 6 cut(s) 103, 163, 177, 246, 412, 419
BssNI GRCGYC 1 cut(s) 297
BssSI CACGAG 1 cut(s) 173
Bst2BI CACGAG 1 cut(s) 173
BstACI GRCGYC 1 cut(s) 297
BstC8I GCNNGC 1 cut(s) 277
BstDEI CTNAG 1 cut(s) 495
BstFNI CGCG 1 cut(s) 230
BstKTI GATC 6 cut(s) 106, 166, 180, 249, 415, 422
BstMAI GTCTC 1 cut(s) 190
BstMBI GATC 6 cut(s) 103, 163, 177, 246, 412, 419
BstMCI CGRYCG 1 cut(s) 332
BstMWI GCNNNNNNNGC 3 cut(s) 227, 315, 464
BstUI CGCG 1 cut(s) 230
BstV1I GCAGC 1 cut(s) 302
BstX2I RGATCY 1 cut(s) 412
BstXI CCANNNNNNTGG 1 cut(s) 73
BstYI RGATCY 1 cut(s) 412
BstZI CGGCCG 1 cut(s) 329
BsuRI GGCC 2 cut(s) 279, 331
BtrI CACGTC 1 cut(s) 512
Cac8I GCNNGC 1 cut(s) 277
CaiI CAGNNNCTG 1 cut(s) 275
Cfr10I RCCGGY 1 cut(s) 302
Cfr13I GGNCC 1 cut(s) 278
CseI GACGC 4 cut(s) 219, 236, 281, 286
Csp6I GTAC 1 cut(s) 151
CviAII CATG 1 cut(s) 181
CviJI RGCY 6 cut(s) 221, 279, 315, 331, 439, 494
CviKI_1 RGCY 6 cut(s) 221, 279, 315, 331, 439, 494
CviQI GTAC 1 cut(s) 151
DdeI CTNAG 1 cut(s) 495
DpnI GATC 6 cut(s) 105, 165, 179, 248, 414, 421
DpnII GATC 6 cut(s) 103, 163, 177, 246, 412, 419
DriI GACNNNNNGTC 1 cut(s) 229
EaeI YGGCCR 1 cut(s) 329
EagI CGGCCG 1 cut(s) 329
Eam1105I GACNNNNNGTC 1 cut(s) 229
EciI GGCGGA 3 cut(s) 252, 416, 473
EclXI CGGCCG 1 cut(s) 329
Eco31I GGTCTC 1 cut(s) 190
Eco32I GATATC 1 cut(s) 207
Eco52I CGGCCG 1 cut(s) 329
EcoRV GATATC 1 cut(s) 207
FaeI CATG 1 cut(s) 184
FaiI YATR 2 cut(s) 182, 409
FatI CATG 1 cut(s) 180
FbaI TGATCA 2 cut(s) 103, 246
Fnu4HI GCNGC 6 cut(s) 316, 332, 399, 468, 489, 492
Fsp4HI GCNGC 6 cut(s) 316, 332, 399, 468, 489, 492
GluI GCNGC 6 cut(s) 316, 332, 399, 468, 489, 492
GsuI CTGGAG 1 cut(s) 252
HaeIII GGCC 2 cut(s) 279, 331
HapII CCGG 2 cut(s) 216, 303
HgaI GACGC 4 cut(s) 219, 236, 281, 286
Hin1I GRCGYC 1 cut(s) 297
Hin1II CATG 1 cut(s) 184
HpaII CCGG 2 cut(s) 216, 303
Hpy188I TCNGA 2 cut(s) 85, 417
Hpy188III TCNNGA 3 cut(s) 167, 216, 269
Hpy99I CGWCG 2 cut(s) 230, 302
HpyAV CCTTC 3 cut(s) 150, 343, 524
HpyCH4IV ACGT 2 cut(s) 446, 511
HpyCH4V TGCA 3 cut(s) 34, 131, 318
HpyF10VI GCNNNNNNNGC 3 cut(s) 227, 315, 464
HpyF3I CTNAG 1 cut(s) 495
HpySE526I ACGT 2 cut(s) 446, 511
Hsp92I GRCGYC 1 cut(s) 297
Hsp92II CATG 1 cut(s) 184
Kpn2I TCCGGA 1 cut(s) 215
Ksp22I TGATCA 2 cut(s) 103, 246
Kzo9I GATC 6 cut(s) 103, 163, 177, 246, 412, 419
LmnI GCTCC 1 cut(s) 218
LpnPI CCDG 5 cut(s) 20, 229, 261, 282, 316
Lsp1109I GCAGC 1 cut(s) 302
LweI GCATC 1 cut(s) 475
MaeII ACGT 2 cut(s) 446, 511
MalI GATC 6 cut(s) 105, 165, 179, 248, 414, 421
MboI GATC 6 cut(s) 103, 163, 177, 246, 412, 419
MboII GAAGA 4 cut(s) 12, 135, 138, 367
MflI RGATCY 1 cut(s) 412
MhlI GDGCHC 1 cut(s) 174
MluCI AATT 3 cut(s) 79, 115, 534
MluI ACGCGT 1 cut(s) 228
MnlI CCTC 4 cut(s) 276, 297, 334, 426
MroI TCCGGA 1 cut(s) 215
MroXI GAANNNNTTC 1 cut(s) 90
MseI TTAA 2 cut(s) 99, 537
MslI CAYNNNNRTG 1 cut(s) 71
MspI CCGG 2 cut(s) 216, 303
MvnI CGCG 1 cut(s) 230
MwoI GCNNNNNNNGC 3 cut(s) 227, 315, 464
NdeII GATC 6 cut(s) 103, 163, 177, 246, 412, 419
NlaIII CATG 1 cut(s) 184
NlaIV GGNNCC 1 cut(s) 414
PcsI WCGNNNNNNNCGW 2 cut(s) 334, 508
PdmI GAANNNNTTC 1 cut(s) 90
PflMI CCANNNNNTGG 1 cut(s) 275
PkrI GCNGC 6 cut(s) 317, 333, 400, 469, 490, 493
Psp1406I AACGTT 1 cut(s) 446
PspN4I GGNNCC 1 cut(s) 414
PspPI GGNCC 1 cut(s) 278
PsrI GAACNNNNNNTAC 2 cut(s) 436, 468
PstNI CAGNNNCTG 1 cut(s) 275
PsuI RGATCY 1 cut(s) 412
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
RseI CAYNNNNRTG 1 cut(s) 71
SaqAI TTAA 2 cut(s) 99, 537
SatI GCNGC 6 cut(s) 316, 332, 399, 468, 489, 492
Sau3AI GATC 6 cut(s) 103, 163, 177, 246, 412, 419
Sau96I GGNCC 1 cut(s) 278
SduI GDGCHC 1 cut(s) 174
SetI ASST 5 cut(s) 223, 345, 437, 449, 514
SfaNI GCATC 1 cut(s) 475
SmiMI CAYNNNNRTG 1 cut(s) 71
Sse9I AATT 3 cut(s) 79, 115, 534
SsiI CCGC 9 cut(s) 263, 332, 398, 401, 458, 467, 488, 491, 544
TaiI ACGT 2 cut(s) 449, 514
TaqI TCGA 2 cut(s) 422, 502
TasI AATT 3 cut(s) 79, 115, 534
TauI GCSGC 5 cut(s) 334, 401, 470, 491, 494
Tru1I TTAA 2 cut(s) 99, 537
Tru9I TTAA 2 cut(s) 99, 537
TseI GCWGC 1 cut(s) 315
TspDTI ATGAA 1 cut(s) 59
TspGWI ACGGA 1 cut(s) 540
Van91I CCANNNNNTGG 1 cut(s) 275
XapI RAATTY 1 cut(s) 115
XcmI CCANNNNNNNNNTGG 1 cut(s) 390
XmnI GAANNNNTTC 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.