Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000568

Physical Location & Seq

Genomic Coordinates Reverse (-)

16274387 .. 16274956

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG183700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGAAAAGCATTGGAAGTAAAATGCCCAAGGAGCAGGAGCACGCTATCATTGTCTCCACCCTGAAACGGGTAATCCGCGGTGGCGATGGCACAGACAATGCACCCTCCCAGCCACCGCCGCCGTCGACGCAGCTCCCAGCAACGGGTGGCACCGATCAACTCGTGATACCATTTTCGGATTGTGATGACACGTGTCAGGTATGTAAGATGGGGAAGGAAGATTGCCTTGGCTGTGGATTGTTCCCGCCAAGCGAGCAAGACACAGGTAAAAAGGTGAAGACGAGCAAGTACAGGGGAGTGCGGCAGAGACCAGGAGGAAAATGGGCTGCGGAGATTCGGGACCCGCGTCGCGCCGTTCGGGTTTGGCTCGGGACGTTCCAGACGGAGGAGGAGGCAGCCAGGGCTTATGACACGAAGGCCCTCGAGTTTCGCGGAGCTGACAGAGCCAAGCTAAACTTCCCGCCGTCCTGGGACACCAGTGGAGCGATGGCTGATGAGACCAAAGTCCAAACAAGTCCAGTCGGAGAGAGCAGCGCTGCTGAGGAAGAAGAAGAAGAGATGGATCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

189

Amino Acids

20.59

Weight (kDa)

5.12

Isoelectric Point (pI)

54.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	95 - 145	1.8e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20350 AT5G67000 AT5G67010
fragaria_vesca	FvH4_1g15960
malus_domestica	MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica	Prupe.7G134100_v2.0.a1
pyrus_communis	pycom02g13800 pycom15g24630
rosa_chinensis	RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata	RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora	Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa	Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha	Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana	Rw1G018940 Rw2G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	149
AccI	GTMKAC	1 cut(s)	125
AccII	CGCG	4 cut(s)	78, 346, 351, 432
AclWI	GGATC	1 cut(s)	557
AcvI	CACGTG	1 cut(s)	192
AfaI	GTAC	1 cut(s)	290
AfeI	AGCGCT	1 cut(s)	535
AfiI	CCNNNNNNNGG	5 cut(s)	66, 67, 142, 143, 385
AflIII	ACRYGT	2 cut(s)	189, 191
AjnI	CCWGG	3 cut(s)	310, 398, 467
AjuI	GAANNNNNNNTTGG	4 cut(s)	210, 242, 440, 472
AluBI	AGCT	3 cut(s)	133, 437, 451
AluI	AGCT	3 cut(s)	133, 437, 451
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	3 cut(s)	58, 301, 491
AlwI	GGATC	1 cut(s)	557
Ama87I	CYCGRG	2 cut(s)	368, 422
Aor51HI	AGCGCT	1 cut(s)	535
AoxI	GGCC	1 cut(s)	417
ApeKI	GCWGC	5 cut(s)	130, 326, 395, 531, 536
AspLEI	GCGC	2 cut(s)	353, 536
AspS9I	GGNCC	2 cut(s)	340, 418
AsuHPI	GGTGA	1 cut(s)	286
AvaI	CYCGRG	2 cut(s)	368, 422
AvaII	GGWCC	1 cut(s)	340
BamHI	GGATCC	1 cut(s)	562
BanI	GGYRCC	1 cut(s)	149
BauI	CACGAG	1 cut(s)	161
BbrPI	CACGTG	1 cut(s)	192
BbsI	GAAGAC	1 cut(s)	284
Bbv12I	GWGCWC	1 cut(s)	42
BbvCI	CCTCAGC	1 cut(s)	540
BbvI	GCAGC	5 cut(s)	142, 313, 407, 523, 543
BccI	CCATC	4 cut(s)	80, 202, 481, 553
BceAI	ACGGC	3 cut(s)	106, 338, 448
BciT130I	CCWGG	3 cut(s)	312, 400, 469
BcoDI	GTCTC	3 cut(s)	58, 301, 491
BfoI	RGCGCY	1 cut(s)	537
BisI	GCNGC	7 cut(s)	119, 131, 302, 327, 396, 532, 537
BlsI	GCNGC	7 cut(s)	120, 132, 303, 328, 397, 533, 538
Bme1390I	CCNGG	3 cut(s)	312, 400, 469
Bme18I	GGWCC	1 cut(s)	340
BmeT110I	CYCGRG	2 cut(s)	368, 422
BmgT120I	GGNCC	2 cut(s)	340, 418
BmiI	GGNNCC	4 cut(s)	151, 341, 342, 564
BmrFI	CCNGG	3 cut(s)	312, 400, 469
BoxI	GACNNNNGTC	3 cut(s)	192, 345, 503
BpiI	GAAGAC	1 cut(s)	284
Bpu10I	CCTNAGC	1 cut(s)	540
BsaAI	YACGTR	1 cut(s)	192
BsaI	GGTCTC	2 cut(s)	301, 491
BsaJI	CCNNGG	5 cut(s)	27, 76, 226, 399, 468
Bsc4I	CCNNNNNNNGG	5 cut(s)	66, 67, 142, 143, 385
Bse1I	ACTGG	2 cut(s)	477, 518
BseBI	CCWGG	3 cut(s)	312, 400, 469
BseDI	CCNNGG	5 cut(s)	27, 76, 226, 399, 468
BseLI	CCNNNNNNNGG	5 cut(s)	66, 67, 142, 143, 385
BseMII	CTCAG	1 cut(s)	531
BseNI	ACTGG	2 cut(s)	477, 518
BseRI	GAGGAG	2 cut(s)	401, 404
BseXI	GCAGC	5 cut(s)	142, 313, 407, 523, 543
BseYI	CCCAGC	2 cut(s)	108, 136
Bsh1236I	CGCG	4 cut(s)	78, 346, 351, 432
BshFI	GGCC	1 cut(s)	419
BshNI	GGYRCC	1 cut(s)	149
BsiHKAI	GWGCWC	1 cut(s)	42
BsiHKCI	CYCGRG	2 cut(s)	368, 422
BslFI	GGGAC	3 cut(s)	353, 385, 485
BslI	CCNNNNNNNGG	5 cut(s)	66, 67, 142, 143, 385
BsmAI	GTCTC	3 cut(s)	58, 301, 491
BsmFI	GGGAC	3 cut(s)	353, 385, 485
BsnI	GGCC	1 cut(s)	419
Bso31I	GGTCTC	2 cut(s)	301, 491
BsoBI	CYCGRG	2 cut(s)	368, 422
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	2 cut(s)	154, 562
BspANI	GGCC	1 cut(s)	419
BspCNI	CTCAG	1 cut(s)	532
BspFNI	CGCG	4 cut(s)	78, 346, 351, 432
BspLI	GGNNCC	4 cut(s)	151, 341, 342, 564
BspPI	GGATC	1 cut(s)	557
BspT107I	GGYRCC	1 cut(s)	149
BspTNI	GGTCTC	2 cut(s)	301, 491
BsrI	ACTGG	2 cut(s)	477, 518
BssECI	CCNNGG	5 cut(s)	27, 76, 226, 399, 468
BssMI	GATC	2 cut(s)	154, 562
BssSI	CACGAG	1 cut(s)	161
BssT1I	CCWWGG	2 cut(s)	27, 226
Bst2BI	CACGAG	1 cut(s)	161
Bst2UI	CCWGG	3 cut(s)	312, 400, 469
Bst6I	CTCTTC	1 cut(s)	549
BstBAI	YACGTR	1 cut(s)	192
BstC8I	GCNNGC	2 cut(s)	42, 254
BstDEI	CTNAG	1 cut(s)	540
BstDSI	CCRYGG	1 cut(s)	76
BstFNI	CGCG	4 cut(s)	78, 346, 351, 432
BstH2I	RGCGCY	1 cut(s)	537
BstHHI	GCGC	2 cut(s)	353, 536
BstKTI	GATC	2 cut(s)	157, 565
BstMAI	GTCTC	3 cut(s)	58, 301, 491
BstMBI	GATC	2 cut(s)	154, 562
BstMWI	GCNNNNNNNGC	6 cut(s)	31, 118, 127, 253, 401, 443
BstNI	CCWGG	3 cut(s)	312, 400, 469
BstPAI	GACNNNNGTC	3 cut(s)	192, 345, 503
BstSCI	CCNGG	3 cut(s)	310, 398, 467
BstUI	CGCG	4 cut(s)	78, 346, 351, 432
BstV1I	GCAGC	5 cut(s)	142, 313, 407, 523, 543
BstV2I	GAAGAC	1 cut(s)	284
BstX2I	RGATCY	1 cut(s)	562
BstYI	RGATCY	1 cut(s)	562
BsuRI	GGCC	1 cut(s)	419
BtgI	CCRYGG	1 cut(s)	76
BtgZI	GCGATG	2 cut(s)	99, 500
BtsIMutI	CAGTG	1 cut(s)	484
Cac8I	GCNNGC	2 cut(s)	42, 254
CfoI	GCGC	2 cut(s)	353, 536
Cfr13I	GGNCC	2 cut(s)	340, 418
Cfr42I	CCGCGG	1 cut(s)	79
CseI	GACGC	2 cut(s)	136, 335
Csp6I	GTAC	1 cut(s)	289
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	1 cut(s)	540
DpnI	GATC	2 cut(s)	156, 564
DpnII	GATC	2 cut(s)	154, 562
Eam1104I	CTCTTC	1 cut(s)	549
EarI	CTCTTC	1 cut(s)	549
Eco130I	CCWWGG	2 cut(s)	27, 226
Eco31I	GGTCTC	2 cut(s)	301, 491
Eco47I	GGWCC	1 cut(s)	340
Eco47III	AGCGCT	1 cut(s)	535
Eco72I	CACGTG	1 cut(s)	192
Eco88I	CYCGRG	2 cut(s)	368, 422
EcoO109I	RGGNCCY	2 cut(s)	340, 418
EcoRII	CCWGG	3 cut(s)	310, 398, 467
EcoT14I	CCWWGG	2 cut(s)	27, 226
ErhI	CCWWGG	2 cut(s)	27, 226
FaiI	YATR	2 cut(s)	202, 408
FalI	AAGNNNNNCTT	4 cut(s)	210, 242, 440, 472
FaqI	GGGAC	3 cut(s)	353, 385, 485
FauI	CCCGC	3 cut(s)	252, 351, 468
FblI	GTMKAC	1 cut(s)	125
Fnu4HI	GCNGC	7 cut(s)	119, 131, 302, 327, 396, 532, 537
Fsp4HI	GCNGC	7 cut(s)	119, 131, 302, 327, 396, 532, 537
GlaI	GCGC	2 cut(s)	352, 535
GluI	GCNGC	7 cut(s)	119, 131, 302, 327, 396, 532, 537
GsaI	CCCAGC	2 cut(s)	112, 140
HaeII	RGCGCY	1 cut(s)	537
HaeIII	GGCC	1 cut(s)	419
HgaI	GACGC	2 cut(s)	136, 335
HhaI	GCGC	2 cut(s)	353, 536
Hin6I	GCGC	2 cut(s)	351, 534
HinP1I	GCGC	2 cut(s)	351, 534
HincII	GTYRAC	1 cut(s)	126
HindII	GTYRAC	1 cut(s)	126
HinfI	GANTC	1 cut(s)	334
HphI	GGTGA	1 cut(s)	286
Hpy166II	GTNNAC	1 cut(s)	126
Hpy188I	TCNGA	2 cut(s)	178, 524
Hpy188III	TCNNGA	4 cut(s)	163, 338, 370, 379
Hpy8I	GTNNAC	1 cut(s)	126
Hpy99I	CGWCG	3 cut(s)	127, 130, 351
HpyAV	CCTTC	2 cut(s)	208, 409
HpyCH4IV	ACGT	2 cut(s)	191, 374
HpyCH4V	TGCA	1 cut(s)	101
HpyF10VI	GCNNNNNNNGC	6 cut(s)	31, 118, 127, 253, 401, 443
HpyF3I	CTNAG	1 cut(s)	540
HpySE526I	ACGT	2 cut(s)	191, 374
HspAI	GCGC	2 cut(s)	351, 534
KflI	GGGWCCC	1 cut(s)	340
KspI	CCGCGG	1 cut(s)	79
Kzo9I	GATC	2 cut(s)	154, 562
LmnI	GCTCC	5 cut(s)	31, 37, 138, 434, 482
Lsp1109I	GCAGC	5 cut(s)	142, 313, 407, 523, 543
MaeII	ACGT	2 cut(s)	191, 374
MalI	GATC	2 cut(s)	156, 564
MboI	GATC	2 cut(s)	154, 562
MboII	GAAGA	6 cut(s)	230, 289, 557, 560, 563, 566
MflI	RGATCY	1 cut(s)	562
MhlI	GDGCHC	1 cut(s)	42
MmeI	TCCRAC	1 cut(s)	502
MnlI	CCTC	7 cut(s)	115, 308, 379, 382, 385, 431, 535
MspA1I	CMGCKG	1 cut(s)	78
MspR9I	CCNGG	3 cut(s)	312, 400, 469
MvaI	CCWGG	3 cut(s)	312, 400, 469
MvnI	CGCG	4 cut(s)	78, 346, 351, 432
MwoI	GCNNNNNNNGC	6 cut(s)	31, 118, 127, 253, 401, 443
NdeII	GATC	2 cut(s)	154, 562
NlaIV	GGNNCC	4 cut(s)	151, 341, 342, 564
PaeR7I	CTCGAG	1 cut(s)	422
PcsI	WCGNNNNNNNCGW	1 cut(s)	343
PfeI	GAWTC	1 cut(s)	334
PkrI	GCNGC	7 cut(s)	120, 132, 303, 328, 397, 533, 538
PmaCI	CACGTG	1 cut(s)	192
PmlI	CACGTG	1 cut(s)	192
Ppu21I	YACGTR	1 cut(s)	192
PpuMI	RGGWCCY	1 cut(s)	340
PshAI	GACNNNNGTC	3 cut(s)	192, 345, 503
Psp5II	RGGWCCY	1 cut(s)	340
Psp6I	CCWGG	3 cut(s)	310, 398, 467
PspCI	CACGTG	1 cut(s)	192
PspFI	CCCAGC	2 cut(s)	108, 136
PspGI	CCWGG	3 cut(s)	310, 398, 467
PspN4I	GGNNCC	4 cut(s)	151, 341, 342, 564
PspPI	GGNCC	2 cut(s)	340, 418
PspPPI	RGGWCCY	1 cut(s)	340
PspXI	VCTCGAGB	1 cut(s)	422
PsuI	RGATCY	1 cut(s)	562
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
SacII	CCGCGG	1 cut(s)	79
SalI	GTCGAC	1 cut(s)	124
SatI	GCNGC	7 cut(s)	119, 131, 302, 327, 396, 532, 537
Sau3AI	GATC	2 cut(s)	154, 562
Sau96I	GGNCC	2 cut(s)	340, 418
ScrFI	CCNGG	3 cut(s)	312, 400, 469
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	8 cut(s)	135, 194, 201, 268, 276, 377, 439, 453
Sfr274I	CTCGAG	1 cut(s)	422
Sfr303I	CCGCGG	1 cut(s)	79
SgrBI	CCGCGG	1 cut(s)	79
SgrDI	CGTCGACG	1 cut(s)	124
SinI	GGWCC	1 cut(s)	340
SlaI	CTCGAG	1 cut(s)	422
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
StyD4I	CCNGG	3 cut(s)	310, 398, 467
StyI	CCWWGG	2 cut(s)	27, 226
TaiI	ACGT	2 cut(s)	194, 377
TaqI	TCGA	2 cut(s)	125, 423
TatI	WGTACW	1 cut(s)	288
TauI	GCSGC	2 cut(s)	121, 304
TfiI	GAWTC	1 cut(s)	334
TscAI	CASTG	1 cut(s)	484
TseI	GCWGC	5 cut(s)	130, 326, 395, 531, 536
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	398, 555
TspRI	CASTG	1 cut(s)	484
VpaK11BI	GGWCC	1 cut(s)	340
XcmI	CCANNNNNNNNNTGG	2 cut(s)	318, 484
XhoI	CTCGAG	1 cut(s)	422
XmiI	GTMKAC	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.