Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0000568

Physical Location & Seq

Genomic Coordinates Reverse (-)

10395296 .. 10395940

Gene Structure 645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g13800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGTCTTCCCGTATGAGTCGGATACAGCAGGAGCAGGAGCACTGCATCATGGTCGCCGCCCTCAAGCACGTCATCTCCGGTGGAAGCAGCAGCGGGCCTACCCCTGAGCACCTGCAGCCAATGACTGCCGTCTACAATGCCACGTGTACGCAATCGGCAGCCGGCCAACGGGCACAACGGGAGGACATGCTGGCCTTCTTACTAGACGGGGACACGTGTCGCCTGTGCGGGATACCCGGGTGTCTCGGGTGCAACTACTTCCCGCCAACGTTGCCGAACCGAAACAAGAAGCCGCAGCTGAGTTTAGGAACCGGGTTTGTCGGGATGAATGGGGCGACTACGAGGAAGAGCAAGAACAAGTACAGGGGCGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCGGAGATTCGCGACCCACTGCGGGCGGCGAGGGTGTGGCTCGGGACGTTCGAGACGGCGGAGGAAGCGGCCAGGGCTTACGACAAGGCCGCCGTCGAGTTCCGCGGGAATCGGGCAAAGCTGAATTTCCCATTGAACCCGGACGTCAACATTGTCACGAGTAACAACAGTTCTAGTAGTGGAACTGGTGTTAATGCCGGTACTAATCCAGGATTCGCTAATAAGCAAAAAGCAAAACAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

215

Amino Acids

23.22

Weight (kDa)

9.85

Isoelectric Point (pI)

39.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	120 - 169	2.1e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20350 AT5G67000 AT5G67010
fragaria_vesca	FvH4_1g15960
malus_domestica	MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica	Prupe.7G134100_v2.0.a1
pyrus_communis	pycom02g13800 pycom15g24630
rosa_chinensis	RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata	RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora	Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa	Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha	Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana	Rw1G018940 Rw2G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	120
AatII	GACGTC	1 cut(s)	546
Acc36I	ACCTGC	1 cut(s)	120
AccI	GTMKAC	1 cut(s)	132
AccII	CGCG	2 cut(s)	411, 504
AclI	AACGTT	1 cut(s)	269
AcoI	YGGCCR	2 cut(s)	163, 468
AcsI	RAATTY	1 cut(s)	523
AcvI	CACGTG	2 cut(s)	144, 216
AcyI	GRCGYC	1 cut(s)	543
AfaI	GTAC	3 cut(s)	148, 362, 601
AfiI	CCNNNNNNNGG	2 cut(s)	168, 421
AflIII	ACRYGT	3 cut(s)	143, 213, 215
AgsI	TTSAA	1 cut(s)	535
AjiI	CACGTC	1 cut(s)	70
AjnI	CCWGG	2 cut(s)	470, 607
AluBI	AGCT	2 cut(s)	298, 520
AluI	AGCT	2 cut(s)	298, 520
Alw21I	GWGCWC	2 cut(s)	42, 111
Alw26I	GTCTC	2 cut(s)	248, 446
Ama87I	CYCGRG	3 cut(s)	236, 245, 440
AoxI	GGCC	6 cut(s)	95, 163, 192, 380, 468, 486
ApeKI	GCWGC	5 cut(s)	87, 90, 115, 158, 295
ApoI	RAATTY	1 cut(s)	523
AspS9I	GGNCC	1 cut(s)	95
AsuC2I	CCSGG	4 cut(s)	237, 238, 313, 539
AvaI	CYCGRG	3 cut(s)	236, 245, 440
BaeGI	GKGCMC	1 cut(s)	175
BaeI	ACNNNNGTAYC	2 cut(s)	224, 257
BauI	CACGAG	1 cut(s)	556
BbrPI	CACGTG	2 cut(s)	144, 216
Bbv12I	GWGCWC	2 cut(s)	42, 111
BbvI	GCAGC	5 cut(s)	99, 102, 127, 170, 307
BceAI	ACGGC	4 cut(s)	113, 367, 471, 476
BcgI	CGANNNNNNTGC	2 cut(s)	34, 68
BciT130I	CCWGG	2 cut(s)	472, 609
BciVI	GTATCC	2 cut(s)	15, 225
BcnI	CCSGG	4 cut(s)	237, 238, 313, 539
BcoDI	GTCTC	2 cut(s)	248, 446
BfaI	CTAG	2 cut(s)	203, 573
BfmI	CTRYAG	1 cut(s)	113
BfuAI	ACCTGC	1 cut(s)	120
BfuI	GTATCC	2 cut(s)	15, 225
Bme1390I	CCNGG	6 cut(s)	237, 238, 313, 472, 539, 609
BmeT110I	CYCGRG	3 cut(s)	236, 245, 440
BmgBI	CACGTC	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	95
BmiI	GGNNCC	1 cut(s)	310
BmrFI	CCNGG	6 cut(s)	237, 238, 313, 472, 539, 609
BmsI	GCATC	1 cut(s)	54
BoxI	GACNNNNGTC	2 cut(s)	128, 216
Bpu10I	CCTNAGC	1 cut(s)	105
BpuEI	CTTGAG	1 cut(s)	47
BpuMI	CCSGG	4 cut(s)	237, 238, 313, 539
BsaAI	YACGTR	2 cut(s)	144, 216
BsaHI	GRCGYC	1 cut(s)	543
BsaJI	CCNNGG	4 cut(s)	236, 383, 471, 502
BsaWI	WCCGGW	1 cut(s)	77
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bsc4I	CCNNNNNNNGG	2 cut(s)	168, 421
Bse118I	RCCGGY	2 cut(s)	161, 596
Bse1I	ACTGG	1 cut(s)	589
BseBI	CCWGG	2 cut(s)	472, 609
BseDI	CCNNGG	4 cut(s)	236, 383, 471, 502
BseGI	GGATG	1 cut(s)	330
BseLI	CCNNNNNNNGG	2 cut(s)	168, 421
BseMII	CTCAG	2 cut(s)	96, 290
BseNI	ACTGG	1 cut(s)	589
BseSI	GKGCMC	1 cut(s)	175
BseXI	GCAGC	5 cut(s)	99, 102, 127, 170, 307
Bsh1236I	CGCG	2 cut(s)	411, 504
BshFI	GGCC	6 cut(s)	97, 165, 194, 382, 470, 488
BsiHKAI	GWGCWC	2 cut(s)	42, 111
BsiHKCI	CYCGRG	3 cut(s)	236, 245, 440
BsiSI	CCGG	6 cut(s)	78, 162, 237, 312, 539, 597
BslFI	GGGAC	2 cut(s)	224, 457
BslI	CCNNNNNNNGG	2 cut(s)	168, 421
BsmAI	GTCTC	2 cut(s)	248, 446
BsmBI	CGTCTC	1 cut(s)	446
BsmFI	GGGAC	2 cut(s)	224, 457
BsnI	GGCC	6 cut(s)	97, 165, 194, 382, 470, 488
BsoBI	CYCGRG	3 cut(s)	236, 245, 440
Bsp1286I	GDGCHC	3 cut(s)	42, 111, 175
Bsp68I	TCGCGA	1 cut(s)	411
BspANI	GGCC	6 cut(s)	97, 165, 194, 382, 470, 488
BspCNI	CTCAG	2 cut(s)	97, 291
BspFNI	CGCG	2 cut(s)	411, 504
BspLI	GGNNCC	1 cut(s)	310
BspMAI	CTGCAG	1 cut(s)	117
BspMI	ACCTGC	1 cut(s)	120
BspQI	GCTCTTC	1 cut(s)	341
BsrFI	RCCGGY	2 cut(s)	161, 596
BsrI	ACTGG	1 cut(s)	589
BssAI	RCCGGY	2 cut(s)	161, 596
BssECI	CCNNGG	4 cut(s)	236, 383, 471, 502
BssNI	GRCGYC	1 cut(s)	543
BssSI	CACGAG	1 cut(s)	556
Bst2BI	CACGAG	1 cut(s)	556
Bst2UI	CCWGG	2 cut(s)	472, 609
Bst4CI	ACNGT	1 cut(s)	569
Bst6I	CTCTTC	1 cut(s)	341
BstACI	GRCGYC	1 cut(s)	543
BstBAI	YACGTR	2 cut(s)	144, 216
BstC8I	GCNNGC	4 cut(s)	95, 163, 192, 423
BstDEI	CTNAG	2 cut(s)	105, 299
BstDSI	CCRYGG	2 cut(s)	383, 502
BstF5I	GGATG	1 cut(s)	330
BstFNI	CGCG	2 cut(s)	411, 504
BstMAI	GTCTC	2 cut(s)	248, 446
BstMWI	GCNNNNNNNGC	4 cut(s)	115, 271, 464, 473
BstNI	CCWGG	2 cut(s)	472, 609
BstNSI	RCATGY	1 cut(s)	190
BstPAI	GACNNNNGTC	2 cut(s)	128, 216
BstSCI	CCNGG	6 cut(s)	235, 236, 311, 470, 537, 607
BstSFI	CTRYAG	1 cut(s)	113
BstSLI	GKGCMC	1 cut(s)	175
BstUI	CGCG	2 cut(s)	411, 504
BstV1I	GCAGC	5 cut(s)	99, 102, 127, 170, 307
BsuI	GTATCC	2 cut(s)	15, 225
BsuRI	GGCC	6 cut(s)	97, 165, 194, 382, 470, 488
BtgI	CCRYGG	2 cut(s)	383, 502
BtrI	CACGTC	1 cut(s)	70
BtsCI	GGATG	1 cut(s)	330
BtsI	GCAGTG	2 cut(s)	40, 416
BtsIMutI	CAGTG	2 cut(s)	40, 416
BtuMI	TCGCGA	1 cut(s)	411
BveI	ACCTGC	1 cut(s)	120
Cac8I	GCNNGC	4 cut(s)	95, 163, 192, 423
Cfr10I	RCCGGY	2 cut(s)	161, 596
Cfr13I	GGNCC	1 cut(s)	95
Cfr42I	CCGCGG	1 cut(s)	505
Cfr9I	CCCGGG	1 cut(s)	236
Csp6I	GTAC	3 cut(s)	147, 361, 600
CviAII	CATG	2 cut(s)	49, 187
CviQI	GTAC	3 cut(s)	147, 361, 600
DdeI	CTNAG	2 cut(s)	105, 299
EaeI	YGGCCR	2 cut(s)	163, 468
Eam1104I	CTCTTC	1 cut(s)	341
EarI	CTCTTC	1 cut(s)	341
EciI	GGCGGA	2 cut(s)	416, 473
Eco72I	CACGTG	2 cut(s)	144, 216
Eco88I	CYCGRG	3 cut(s)	236, 245, 440
EcoRII	CCWGG	2 cut(s)	470, 607
Esp3I	CGTCTC	1 cut(s)	446
FaeI	CATG	2 cut(s)	52, 190
FaiI	YATR	3 cut(s)	14, 50, 188
FaqI	GGGAC	2 cut(s)	224, 457
FatI	CATG	2 cut(s)	48, 186
FauI	CCCGC	5 cut(s)	86, 221, 270, 414, 497
FblI	GTMKAC	1 cut(s)	132
FokI	GGATG	1 cut(s)	337
FspBI	CTAG	2 cut(s)	203, 573
HaeIII	GGCC	6 cut(s)	97, 165, 194, 382, 470, 488
HapII	CCGG	6 cut(s)	78, 162, 237, 312, 539, 597
Hin1I	GRCGYC	1 cut(s)	543
Hin1II	CATG	2 cut(s)	52, 190
HincII	GTYRAC	1 cut(s)	547
HindII	GTYRAC	1 cut(s)	547
HinfI	GANTC	4 cut(s)	16, 406, 508, 612
HpaII	CCGG	6 cut(s)	78, 162, 237, 312, 539, 597
Hpy166II	GTNNAC	3 cut(s)	133, 147, 547
Hpy188I	TCNGA	1 cut(s)	21
Hpy188III	TCNNGA	5 cut(s)	322, 410, 442, 451, 556
Hpy8I	GTNNAC	3 cut(s)	133, 147, 547
Hpy99I	CGWCG	1 cut(s)	497
HpyAV	CCTTC	1 cut(s)	205
HpyCH4III	ACNGT	1 cut(s)	569
HpyCH4IV	ACGT	6 cut(s)	69, 143, 215, 269, 446, 543
HpyCH4V	TGCA	3 cut(s)	45, 115, 252
HpyF10VI	GCNNNNNNNGC	4 cut(s)	115, 271, 464, 473
HpyF3I	CTNAG	2 cut(s)	105, 299
HpySE526I	ACGT	6 cut(s)	69, 143, 215, 269, 446, 543
Hsp92I	GRCGYC	1 cut(s)	543
Hsp92II	CATG	2 cut(s)	52, 190
KroI	GCCGGC	1 cut(s)	161
KroNI	GCCGGC	1 cut(s)	163
KspI	CCGCGG	1 cut(s)	505
LguI	GCTCTTC	1 cut(s)	341
LmnI	GCTCC	2 cut(s)	31, 37
Lsp1109I	GCAGC	5 cut(s)	99, 102, 127, 170, 307
LweI	GCATC	1 cut(s)	54
MaeI	CTAG	2 cut(s)	203, 573
MaeII	ACGT	6 cut(s)	69, 143, 215, 269, 446, 543
MaeIII	GTNAC	2 cut(s)	553, 560
MboII	GAAGA	1 cut(s)	358
MhlI	GDGCHC	3 cut(s)	42, 111, 175
MluCI	AATT	2 cut(s)	523, 640
MlyI	GAGTC	1 cut(s)	25
MnlI	CCTC	7 cut(s)	71, 175, 336, 366, 372, 423, 454
MroNI	GCCGGC	1 cut(s)	161
MseI	TTAA	2 cut(s)	591, 643
MspA1I	CMGCKG	3 cut(s)	93, 298, 504
MspI	CCGG	6 cut(s)	78, 162, 237, 312, 539, 597
MspR9I	CCNGG	6 cut(s)	237, 238, 313, 472, 539, 609
MvaI	CCWGG	2 cut(s)	472, 609
MvnI	CGCG	2 cut(s)	411, 504
MwoI	GCNNNNNNNGC	4 cut(s)	115, 271, 464, 473
NaeI	GCCGGC	1 cut(s)	163
NciI	CCSGG	4 cut(s)	237, 238, 313, 539
NgoMIV	GCCGGC	1 cut(s)	161
NlaIII	CATG	2 cut(s)	52, 190
NlaIV	GGNNCC	1 cut(s)	310
NmuCI	GTSAC	1 cut(s)	553
NruI	TCGCGA	1 cut(s)	411
NspI	RCATGY	1 cut(s)	190
PaqCI	CACCTGC	1 cut(s)	120
PciSI	GCTCTTC	1 cut(s)	341
PcsI	WCGNNNNNNNCGW	1 cut(s)	447
PdiI	GCCGGC	1 cut(s)	163
PfeI	GAWTC	3 cut(s)	406, 508, 612
PfoI	TCCNGGA	1 cut(s)	607
PleI	GAGTC	1 cut(s)	24
PmaCI	CACGTG	2 cut(s)	144, 216
PmlI	CACGTG	2 cut(s)	144, 216
PpsI	GAGTC	1 cut(s)	24
Ppu21I	YACGTR	2 cut(s)	144, 216
PshAI	GACNNNNGTC	2 cut(s)	128, 216
Psp1406I	AACGTT	1 cut(s)	269
Psp6I	CCWGG	2 cut(s)	470, 607
PspCI	CACGTG	2 cut(s)	144, 216
PspGI	CCWGG	2 cut(s)	470, 607
PspN4I	GGNNCC	1 cut(s)	310
PspPI	GGNCC	1 cut(s)	95
PsrI	GAACNNNNNNTAC	2 cut(s)	553, 585
PstI	CTGCAG	1 cut(s)	117
PvuII	CAGCTG	1 cut(s)	298
RruI	TCGCGA	1 cut(s)	411
RsaI	GTAC	3 cut(s)	148, 362, 601
RsaNI	GTAC	3 cut(s)	147, 361, 600
SacII	CCGCGG	1 cut(s)	505
SapI	GCTCTTC	1 cut(s)	341
SaqAI	TTAA	2 cut(s)	591, 643
Sau96I	GGNCC	1 cut(s)	95
SchI	GAGTC	1 cut(s)	25
ScrFI	CCNGG	6 cut(s)	237, 238, 313, 472, 539, 609
SduI	GDGCHC	3 cut(s)	42, 111, 175
SetI	ASST	9 cut(s)	72, 114, 146, 218, 272, 300, 449, 522, 546
SfaNI	GCATC	1 cut(s)	54
SfcI	CTRYAG	1 cut(s)	113
Sfr303I	CCGCGG	1 cut(s)	505
SgrBI	CCGCGG	1 cut(s)	505
SmaI	CCCGGG	1 cut(s)	238
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	2 cut(s)	523, 640
SspMI	CTAG	2 cut(s)	203, 573
StyD4I	CCNGG	6 cut(s)	235, 236, 311, 470, 537, 607
TaaI	ACNGT	1 cut(s)	569
TaiI	ACGT	6 cut(s)	72, 146, 218, 272, 449, 546
TaqI	TCGA	2 cut(s)	450, 495
TasI	AATT	2 cut(s)	523, 640
TatI	WGTACW	1 cut(s)	360
TauI	GCSGC	6 cut(s)	59, 295, 401, 428, 470, 491
TfiI	GAWTC	3 cut(s)	406, 508, 612
Tru1I	TTAA	2 cut(s)	591, 643
Tru9I	TTAA	2 cut(s)	591, 643
TscAI	CASTG	2 cut(s)	47, 423
TseFI	GTSAC	1 cut(s)	553
TseI	GCWGC	5 cut(s)	87, 90, 115, 158, 295
Tsp45I	GTSAC	1 cut(s)	553
TspDTI	ATGAA	1 cut(s)	341
TspMI	CCCGGG	1 cut(s)	236
TspRI	CASTG	2 cut(s)	47, 423
XapI	RAATTY	1 cut(s)	523
XceI	RCATGY	1 cut(s)	190
XmaI	CCCGGG	1 cut(s)	236
XmiI	GTMKAC	1 cut(s)	132
XspI	CTAG	2 cut(s)	203, 573
ZraI	GACGTC	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.