Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000568

Physical Location & Seq

Genomic Coordinates Forward (+)

76374231 .. 76374952

Gene Structure 722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00138250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGAAAAGCACTGGGTCTCAAATGCCCTCGCCTTCCGGCGGTTTATCCAAGGAGCAGGAGCACGCTATCATTGTCTCCGCTCTGTTACGGGTAGTCTGCGGTGGCACCACCCAGCCACCGCCGCCGCAGCTCCATTATGCCTCATCATCACTTCCTCCAACGGATGGACGATTGCCTCGGCTGTGGTTTGTTCCCGCCAAGCGAGCAAGACAAAGGGAAAGGGAAAAAGATGAAGACGAGCAAGTACAGGGGAGTGCGGCAGAGATCGGGGGAAAATGGGTGGCAGAGATTCGTGACCCGCGTCGCACGGTTCGGGTTTGGCTCGGGACGTTCCAGACGGAGGAGGAGGGAGCCAGGGCTTATGACACGGCCGCGATCGAGTTCCGAGGAGAGAGAGCCAAGCTCAACTTCCCACTAAGCAGTGAAGCTGGTACTACTAGTGCATCATTGACTACGCAAAGCATGGAGACTGGTGAGGTCAATCAAGACGACGCGAGTTCTGTGAAGTCAGCGAATCACGAAGAGGGACAGAGTACTGATGTTAAGGACGAAGACATCCATCGCTTCATCTGGGAAATGCTTAAAGATGACGATGGAGATTTATATTTAAGCATATGGGCAGTGGCGGAACATGAAAATTATTTTTGGAGGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

218

Amino Acids

24.28

Weight (kDa)

4.98

Isoelectric Point (pI)

52.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	91 - 130	2.9e-07	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20350 AT5G67000 AT5G67010
fragaria_vesca	FvH4_1g15960
malus_domestica	MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica	Prupe.7G134100_v2.0.a1
pyrus_communis	pycom02g13800 pycom15g24630
rosa_chinensis	RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata	RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora	Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa	Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha	Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana	Rw1G018940 Rw2G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	104
AccB7I	CCANNNNNTGG	1 cut(s)	164
AccBSI	CCGCTC	1 cut(s)	80
AccII	CGCG	3 cut(s)	301, 374, 494
AcoI	YGGCCR	1 cut(s)	369
AfaI	GTAC	3 cut(s)	246, 433, 535
AfiI	CCNNNNNNNGG	3 cut(s)	38, 164, 340
AhlI	ACTAGT	1 cut(s)	437
AjnI	CCWGG	1 cut(s)	353
AjuI	GAANNNNNNNTTGG	2 cut(s)	392, 424
AluBI	AGCT	3 cut(s)	130, 403, 428
AluI	AGCT	3 cut(s)	130, 403, 428
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	3 cut(s)	21, 79, 461
Ama87I	CYCGRG	1 cut(s)	323
AoxI	GGCC	1 cut(s)	369
ApeKI	GCWGC	1 cut(s)	127
AsuHPI	GGTGA	1 cut(s)	485
AvaI	CYCGRG	1 cut(s)	323
BanI	GGYRCC	1 cut(s)	104
BbsI	GAAGAC	2 cut(s)	240, 558
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	1 cut(s)	139
BccI	CCATC	3 cut(s)	158, 567, 587
BceAI	ACGGC	1 cut(s)	384
BciT130I	CCWGG	1 cut(s)	355
BcoDI	GTCTC	3 cut(s)	21, 79, 461
BcuI	ACTAGT	1 cut(s)	437
BfaI	CTAG	1 cut(s)	438
BisI	GCNGC	5 cut(s)	122, 125, 128, 258, 372
BlsI	GCNGC	5 cut(s)	123, 126, 129, 259, 373
BmcAI	AGTACT	1 cut(s)	535
Bme1390I	CCNGG	1 cut(s)	355
BmeT110I	CYCGRG	1 cut(s)	323
BmiI	GGNNCC	2 cut(s)	106, 352
BmrFI	CCNGG	1 cut(s)	355
BmrI	ACTGGG	1 cut(s)	21
BmsI	GCATC	1 cut(s)	452
BmuI	ACTGGG	1 cut(s)	21
BoxI	GACNNNNGTC	1 cut(s)	300
BpiI	GAAGAC	2 cut(s)	240, 558
BplI	GAGNNNNNCTC	2 cut(s)	387, 419
BsaI	GGTCTC	1 cut(s)	21
BsaJI	CCNNGG	4 cut(s)	48, 176, 354, 385
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 164, 340
Bse1I	ACTGG	2 cut(s)	16, 475
BseBI	CCWGG	1 cut(s)	355
BseDI	CCNNGG	4 cut(s)	48, 176, 354, 385
BseGI	GGATG	2 cut(s)	169, 555
BseLI	CCNNNNNNNGG	3 cut(s)	38, 164, 340
BseNI	ACTGG	2 cut(s)	16, 475
BseRI	GAGGAG	3 cut(s)	356, 359, 402
BseX3I	CGGCCG	1 cut(s)	369
BseXI	GCAGC	1 cut(s)	139
BseYI	CCCAGC	1 cut(s)	111
Bsh1236I	CGCG	3 cut(s)	301, 374, 494
Bsh1285I	CGRYCG	2 cut(s)	372, 378
BshFI	GGCC	1 cut(s)	371
BshNI	GGYRCC	1 cut(s)	104
BsiEI	CGRYCG	2 cut(s)	372, 378
BsiHKAI	GWGCWC	1 cut(s)	63
BsiHKCI	CYCGRG	1 cut(s)	323
BsiSI	CCGG	1 cut(s)	36
BslFI	GGGAC	2 cut(s)	340, 540
BslI	CCNNNNNNNGG	3 cut(s)	38, 164, 340
BsmAI	GTCTC	3 cut(s)	21, 79, 461
BsmFI	GGGAC	2 cut(s)	340, 540
BsnI	GGCC	1 cut(s)	371
Bso31I	GGTCTC	1 cut(s)	21
BsoBI	CYCGRG	1 cut(s)	323
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	2 cut(s)	264, 375
BspANI	GGCC	1 cut(s)	371
BspFNI	CGCG	3 cut(s)	301, 374, 494
BspLI	GGNNCC	2 cut(s)	106, 352
BspT107I	GGYRCC	1 cut(s)	104
BspTNI	GGTCTC	1 cut(s)	21
BsrBI	CCGCTC	1 cut(s)	80
BsrI	ACTGG	2 cut(s)	16, 475
BssECI	CCNNGG	4 cut(s)	48, 176, 354, 385
BssMI	GATC	2 cut(s)	264, 375
BssT1I	CCWWGG	1 cut(s)	48
Bst2UI	CCWGG	1 cut(s)	355
Bst4CI	ACNGT	1 cut(s)	310
Bst6I	CTCTTC	1 cut(s)	516
BstC8I	GCNNGC	2 cut(s)	63, 204
BstDEI	CTNAG	1 cut(s)	416
BstF5I	GGATG	2 cut(s)	169, 555
BstFNI	CGCG	3 cut(s)	301, 374, 494
BstKTI	GATC	2 cut(s)	267, 378
BstMAI	GTCTC	3 cut(s)	21, 79, 461
BstMBI	GATC	2 cut(s)	264, 375
BstMCI	CGRYCG	2 cut(s)	372, 378
BstMWI	GCNNNNNNNGC	3 cut(s)	121, 127, 203
BstNI	CCWGG	1 cut(s)	355
BstPAI	GACNNNNGTC	1 cut(s)	300
BstSCI	CCNGG	1 cut(s)	353
BstUI	CGCG	3 cut(s)	301, 374, 494
BstV1I	GCAGC	1 cut(s)	139
BstV2I	GAAGAC	2 cut(s)	240, 558
BstZI	CGGCCG	1 cut(s)	369
BsuRI	GGCC	1 cut(s)	371
BtgZI	GCGATG	1 cut(s)	545
BtsCI	GGATG	2 cut(s)	169, 555
BtsI	GCAGTG	2 cut(s)	427, 627
BtsIMutI	CAGTG	3 cut(s)	9, 427, 627
Cac8I	GCNNGC	2 cut(s)	63, 204
CseI	GACGC	2 cut(s)	290, 500
Csp6I	GTAC	3 cut(s)	245, 432, 534
CviAII	CATG	2 cut(s)	463, 632
CviQI	GTAC	3 cut(s)	245, 432, 534
DdeI	CTNAG	1 cut(s)	416
DpnI	GATC	2 cut(s)	266, 377
DpnII	GATC	2 cut(s)	264, 375
EaeI	YGGCCR	1 cut(s)	369
EagI	CGGCCG	1 cut(s)	369
Eam1104I	CTCTTC	1 cut(s)	516
EarI	CTCTTC	1 cut(s)	516
EciI	GGCGGA	1 cut(s)	641
EclXI	CGGCCG	1 cut(s)	369
Eco130I	CCWWGG	1 cut(s)	48
Eco31I	GGTCTC	1 cut(s)	21
Eco52I	CGGCCG	1 cut(s)	369
Eco88I	CYCGRG	1 cut(s)	323
EcoRII	CCWGG	1 cut(s)	353
EcoT14I	CCWWGG	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	2 cut(s)	466, 635
FaiI	YATR	7 cut(s)	138, 363, 464, 604, 614, 616, 633
FalI	AAGNNNNNCTT	2 cut(s)	392, 424
FaqI	GGGAC	2 cut(s)	340, 540
FatI	CATG	2 cut(s)	462, 631
FauI	CCCGC	2 cut(s)	202, 306
FauNDI	CATATG	1 cut(s)	614
Fnu4HI	GCNGC	5 cut(s)	122, 125, 128, 258, 372
FokI	GGATG	2 cut(s)	176, 542
Fsp4HI	GCNGC	5 cut(s)	122, 125, 128, 258, 372
FspBI	CTAG	1 cut(s)	438
GluI	GCNGC	5 cut(s)	122, 125, 128, 258, 372
GsaI	CCCAGC	1 cut(s)	115
HaeIII	GGCC	1 cut(s)	371
HapII	CCGG	1 cut(s)	36
HgaI	GACGC	2 cut(s)	290, 500
Hin1II	CATG	2 cut(s)	466, 635
HinfI	GANTC	2 cut(s)	289, 514
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	1 cut(s)	485
Hpy188I	TCNGA	1 cut(s)	386
Hpy188III	TCNNGA	5 cut(s)	293, 325, 334, 485, 518
Hpy99I	CGWCG	2 cut(s)	306, 494
HpyAV	CCTTC	1 cut(s)	42
HpyCH4III	ACNGT	1 cut(s)	310
HpyCH4IV	ACGT	1 cut(s)	329
HpyCH4V	TGCA	1 cut(s)	443
HpyF10VI	GCNNNNNNNGC	3 cut(s)	121, 127, 203
HpyF3I	CTNAG	1 cut(s)	416
HpySE526I	ACGT	1 cut(s)	329
Hsp92II	CATG	2 cut(s)	466, 635
Kzo9I	GATC	2 cut(s)	264, 375
LmnI	GCTCC	4 cut(s)	52, 58, 135, 350
Lsp1109I	GCAGC	1 cut(s)	139
LweI	GCATC	1 cut(s)	452
MaeI	CTAG	1 cut(s)	438
MaeII	ACGT	1 cut(s)	329
MaeIII	GTNAC	2 cut(s)	84, 293
MalI	GATC	2 cut(s)	266, 377
MbiI	CCGCTC	1 cut(s)	80
MboI	GATC	2 cut(s)	264, 375
MboII	GAAGA	3 cut(s)	245, 533, 563
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	1 cut(s)	637
MmeI	TCCRAC	1 cut(s)	182
MseI	TTAA	3 cut(s)	543, 582, 608
MspI	CCGG	1 cut(s)	36
MspR9I	CCNGG	1 cut(s)	355
MvaI	CCWGG	1 cut(s)	355
MvnI	CGCG	3 cut(s)	301, 374, 494
MwoI	GCNNNNNNNGC	3 cut(s)	121, 127, 203
NdeI	CATATG	1 cut(s)	614
NdeII	GATC	2 cut(s)	264, 375
NlaIII	CATG	2 cut(s)	466, 635
NlaIV	GGNNCC	2 cut(s)	106, 352
NmeAIII	GCCGAG	1 cut(s)	157
NmuCI	GTSAC	1 cut(s)	293
PcsI	WCGNNNNNNNCGW	1 cut(s)	298
PfeI	GAWTC	2 cut(s)	289, 514
PflMI	CCANNNNNTGG	1 cut(s)	164
PkrI	GCNGC	5 cut(s)	123, 126, 129, 259, 373
Ple19I	CGATCG	1 cut(s)	378
PshAI	GACNNNNGTC	1 cut(s)	300
Psp6I	CCWGG	1 cut(s)	353
PspFI	CCCAGC	1 cut(s)	111
PspGI	CCWGG	1 cut(s)	353
PspN4I	GGNNCC	2 cut(s)	106, 352
PvuI	CGATCG	1 cut(s)	378
RsaI	GTAC	3 cut(s)	246, 433, 535
RsaNI	GTAC	3 cut(s)	245, 432, 534
SaqAI	TTAA	3 cut(s)	543, 582, 608
SatI	GCNGC	5 cut(s)	122, 125, 128, 258, 372
Sau3AI	GATC	2 cut(s)	264, 375
ScaI	AGTACT	1 cut(s)	535
ScrFI	CCNGG	1 cut(s)	355
SduI	GDGCHC	1 cut(s)	63
SetI	ASST	5 cut(s)	132, 332, 405, 430, 480
SfaNI	GCATC	1 cut(s)	452
SpeI	ACTAGT	1 cut(s)	437
Sse9I	AATT	1 cut(s)	637
SspMI	CTAG	1 cut(s)	438
StyD4I	CCNGG	1 cut(s)	353
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	1 cut(s)	310
TaiI	ACGT	1 cut(s)	332
TaqI	TCGA	1 cut(s)	378
TasI	AATT	1 cut(s)	637
TatI	WGTACW	2 cut(s)	244, 533
TauI	GCSGC	4 cut(s)	124, 127, 260, 374
TfiI	GAWTC	2 cut(s)	289, 514
Tru1I	TTAA	3 cut(s)	543, 582, 608
Tru9I	TTAA	3 cut(s)	543, 582, 608
TscAI	CASTG	3 cut(s)	16, 427, 627
TseFI	GTSAC	1 cut(s)	293
TseI	GCWGC	1 cut(s)	127
Tsp45I	GTSAC	1 cut(s)	293
TspDTI	ATGAA	4 cut(s)	17, 246, 556, 648
TspGWI	ACGGA	2 cut(s)	176, 353
TspRI	CASTG	3 cut(s)	16, 427, 627
Van91I	CCANNNNNTGG	1 cut(s)	164
XspI	CTAG	1 cut(s)	438
ZrmI	AGTACT	1 cut(s)	535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.