Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000568

Physical Location & Seq

Genomic Coordinates Forward (+)

76231526 .. 76233688

Gene Structure 2163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00138130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGTCCTCGCACGCCGGGGGTTTACCGAAAGAGCGGGAGCACGCAATCATGGTCTCCGCCCTTAAACAGGTCATCGCCGGGGGCGGCATTGCCTCCAGAAGCAGCGGACACTCTTGGCCAGCAGTCGAAGGTGGAAGTGGAACAAAGAAGGTTGTGATATCAATTTCGGATGGAGAAACGTGCCAGGTGTGCAGGATCGACGGCTGCCTCGGCTGCGAGTTCTTCCCGCCCAGCAAGCAGGACAAAGGGAAGAGGATCAAGAAGGGCAAGTACAGGGGAGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCGGAGATTCGGGACCCGCGGAGGGCGGCGAGGGTTTGGCTCGGGACGTTCAAGACGGCGGAGGAAGCGGCCAGGGCTTATGACAAGGCTGCGATCGAGTTCCGAGGAGAGAGAGCGAAGCTCAACTTCCCACTAACCAGTGAAGCTGATACTACTAATACTCCTATTAGTGCAGCATTGGCTAAGCAAAGCATGGAGACTAGTGAGGTCAATCTGGTCAAAGCCAATTCTGTGAAGTCAGCGAATCAGGAAGAAGGACAGAGCAGTGATGTTAAGGACGAAGACGTCGATCCTCCAGCTACTATGAAAGTGGTGTACCTAACCTCTTATGCTCATAATCCTGATGATTCTGCTCCAATTTCTTATTCTAGCTATGAAGATCCCAGCTTTCAGAACTTGCTTGAATATCAATATCCAAACCCAGCTCTATATTATCATGCCAATTACCACTCTGCCTCTACTTTCAGCGACCCCATTTCAATTCAATATGACCCCCAAAATTCTATGAACAGAGTTATGACATTAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

279

Amino Acids

30.62

Weight (kDa)

7.66

Isoelectric Point (pI)

39.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	90 - 139	4.7e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20350 AT5G67000 AT5G67010
fragaria_vesca	FvH4_1g15960
malus_domestica	MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica	Prupe.7G134100_v2.0.a1
pyrus_communis	pycom02g13800 pycom15g24630
rosa_chinensis	RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata	RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora	Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa	Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha	Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana	Rw1G018940 Rw2G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	593
AatII	GACGTC	1 cut(s)	597
AccBSI	CCGCTC	1 cut(s)	34
AccII	CGCG	1 cut(s)	328
AclWI	GGATC	4 cut(s)	203, 263, 593, 683
AcoI	YGGCCR	2 cut(s)	116, 378
AcsI	RAATTY	1 cut(s)	808
AcyI	GRCGYC	1 cut(s)	594
AfaI	GTAC	2 cut(s)	272, 626
AfiI	CCNNNNNNNGG	2 cut(s)	67, 331
AgsI	TTSAA	4 cut(s)	361, 713, 789, 794
AhlI	ACTAGT	1 cut(s)	509
AjnI	CCWGG	2 cut(s)	183, 380
AjuI	GAANNNNNNNTTGG	2 cut(s)	658, 690
AluBI	AGCT	6 cut(s)	430, 455, 608, 681, 696, 734
AluI	AGCT	6 cut(s)	430, 455, 608, 681, 696, 734
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	2 cut(s)	58, 500
AlwI	GGATC	4 cut(s)	203, 263, 593, 683
Ama87I	CYCGRG	1 cut(s)	350
AoxI	GGCC	3 cut(s)	116, 290, 378
ApeKI	GCWGC	5 cut(s)	102, 204, 213, 398, 482
ApoI	RAATTY	1 cut(s)	808
AspS9I	GGNCC	1 cut(s)	322
AsuC2I	CCSGG	2 cut(s)	16, 79
AvaI	CYCGRG	1 cut(s)	350
AvaII	GGWCC	1 cut(s)	322
BalI	TGGCCA	1 cut(s)	118
BarI	GAAGNNNNNNTAC	2 cut(s)	254, 286
BbsI	GAAGAC	1 cut(s)	597
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	5 cut(s)	114, 191, 200, 385, 494
BccI	CCATC	1 cut(s)	164
BceAI	ACGGC	3 cut(s)	217, 277, 381
BciT130I	CCWGG	2 cut(s)	185, 382
BcnI	CCSGG	2 cut(s)	16, 79
BcoDI	GTCTC	2 cut(s)	58, 500
BcuI	ACTAGT	1 cut(s)	509
BfaI	CTAG	2 cut(s)	510, 678
BisI	GCNGC	9 cut(s)	85, 103, 205, 214, 309, 336, 378, 399, 483
BlpI	GCTNAGC	1 cut(s)	492
BlsI	GCNGC	9 cut(s)	86, 104, 206, 215, 310, 337, 379, 400, 484
Bme1390I	CCNGG	4 cut(s)	16, 79, 185, 382
Bme18I	GGWCC	1 cut(s)	322
BmeT110I	CYCGRG	1 cut(s)	350
BmgT120I	GGNCC	1 cut(s)	322
BmiI	GGNNCC	2 cut(s)	323, 324
BmrFI	CCNGG	4 cut(s)	16, 79, 185, 382
BpiI	GAAGAC	1 cut(s)	597
BplI	GAGNNNNNCTC	2 cut(s)	414, 446
BpmI	CTGGAG	2 cut(s)	79, 588
Bpu1102I	GCTNAGC	1 cut(s)	492
BpuMI	CCSGG	2 cut(s)	16, 79
BsaHI	GRCGYC	1 cut(s)	594
BsaI	GGTCTC	1 cut(s)	58
BsaJI	CCNNGG	7 cut(s)	15, 78, 208, 293, 326, 381, 412
BsaXI	ACNNNNNCTCC	2 cut(s)	454, 484
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 331
Bse1I	ACTGG	1 cut(s)	447
Bse3DI	GCAATG	1 cut(s)	87
BseBI	CCWGG	2 cut(s)	185, 382
BseDI	CCNNGG	7 cut(s)	15, 78, 208, 293, 326, 381, 412
BseGI	GGATG	1 cut(s)	175
BseLI	CCNNNNNNNGG	2 cut(s)	67, 331
BseMI	GCAATG	1 cut(s)	87
BseNI	ACTGG	1 cut(s)	447
BseRI	GAGGAG	1 cut(s)	429
BseXI	GCAGC	5 cut(s)	114, 191, 200, 385, 494
BseYI	CCCAGC	3 cut(s)	230, 692, 730
BsgI	GTGCAG	2 cut(s)	211, 501
Bsh1236I	CGCG	1 cut(s)	328
Bsh1285I	CGRYCG	1 cut(s)	405
BshFI	GGCC	3 cut(s)	118, 292, 380
BsiEI	CGRYCG	1 cut(s)	405
BsiHKAI	GWGCWC	1 cut(s)	42
BsiHKCI	CYCGRG	1 cut(s)	350
BsiSI	CCGG	2 cut(s)	15, 78
BslFI	GGGAC	2 cut(s)	335, 367
BslI	CCNNNNNNNGG	2 cut(s)	67, 331
BsmAI	GTCTC	2 cut(s)	58, 500
BsmFI	GGGAC	2 cut(s)	335, 367
BsnI	GGCC	3 cut(s)	118, 292, 380
Bso31I	GGTCTC	1 cut(s)	58
BsoBI	CYCGRG	1 cut(s)	350
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	5 cut(s)	195, 255, 402, 598, 688
Bsp1720I	GCTNAGC	1 cut(s)	492
BspANI	GGCC	3 cut(s)	118, 292, 380
BspFNI	CGCG	1 cut(s)	328
BspLI	GGNNCC	2 cut(s)	323, 324
BspPI	GGATC	4 cut(s)	203, 263, 593, 683
BspTNI	GGTCTC	1 cut(s)	58
BsrBI	CCGCTC	1 cut(s)	34
BsrDI	GCAATG	1 cut(s)	87
BsrI	ACTGG	1 cut(s)	447
BssECI	CCNNGG	7 cut(s)	15, 78, 208, 293, 326, 381, 412
BssMI	GATC	5 cut(s)	195, 255, 402, 598, 688
BssNI	GRCGYC	1 cut(s)	594
Bst2UI	CCWGG	2 cut(s)	185, 382
Bst6I	CTCTTC	1 cut(s)	245
BstACI	GRCGYC	1 cut(s)	594
BstC8I	GCNNGC	4 cut(s)	12, 42, 120, 236
BstDEI	CTNAG	1 cut(s)	492
BstDSI	CCRYGG	2 cut(s)	293, 326
BstENI	CCTNNNNNAGG	1 cut(s)	65
BstF5I	GGATG	1 cut(s)	175
BstFNI	CGCG	1 cut(s)	328
BstKTI	GATC	5 cut(s)	198, 258, 405, 601, 691
BstMAI	GTCTC	2 cut(s)	58, 500
BstMBI	GATC	5 cut(s)	195, 255, 402, 598, 688
BstMCI	CGRYCG	1 cut(s)	405
BstMWI	GCNNNNNNNGC	7 cut(s)	189, 210, 213, 235, 374, 383, 488
BstNI	CCWGG	2 cut(s)	185, 382
BstSCI	CCNGG	4 cut(s)	14, 77, 183, 380
BstUI	CGCG	1 cut(s)	328
BstV1I	GCAGC	5 cut(s)	114, 191, 200, 385, 494
BstV2I	GAAGAC	1 cut(s)	597
BstX2I	RGATCY	1 cut(s)	688
BstYI	RGATCY	1 cut(s)	688
BsuRI	GGCC	3 cut(s)	118, 292, 380
BtgI	CCRYGG	2 cut(s)	293, 326
BtgZI	GCGATG	1 cut(s)	58
BtsCI	GGATG	1 cut(s)	175
BtsI	GCAGTG	1 cut(s)	580
BtsIMutI	CAGTG	2 cut(s)	454, 580
Cac8I	GCNNGC	4 cut(s)	12, 42, 120, 236
Cfr13I	GGNCC	1 cut(s)	322
Cfr42I	CCGCGG	1 cut(s)	329
Csp6I	GTAC	2 cut(s)	271, 625
CviAII	CATG	3 cut(s)	49, 502, 746
CviQI	GTAC	2 cut(s)	271, 625
DdeI	CTNAG	1 cut(s)	492
DpnI	GATC	5 cut(s)	197, 257, 404, 600, 690
DpnII	GATC	5 cut(s)	195, 255, 402, 598, 688
DrdI	GACNNNNNNGTC	1 cut(s)	593
DseDI	GACNNNNNNGTC	1 cut(s)	593
EaeI	YGGCCR	2 cut(s)	116, 378
Eam1104I	CTCTTC	1 cut(s)	245
EarI	CTCTTC	1 cut(s)	245
EciI	GGCGGA	3 cut(s)	46, 326, 383
Eco31I	GGTCTC	1 cut(s)	58
Eco32I	GATATC	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	322
Eco88I	CYCGRG	1 cut(s)	350
EcoNI	CCTNNNNNAGG	1 cut(s)	65
EcoO109I	RGGNCCY	1 cut(s)	322
EcoRII	CCWGG	2 cut(s)	183, 380
EcoRV	GATATC	1 cut(s)	159
FaeI	CATG	3 cut(s)	52, 505, 749
FalI	AAGNNNNNCTT	2 cut(s)	419, 451
FaqI	GGGAC	2 cut(s)	335, 367
FatI	CATG	3 cut(s)	48, 501, 745
FauI	CCCGC	3 cut(s)	27, 234, 333
Fnu4HI	GCNGC	9 cut(s)	85, 103, 205, 214, 309, 336, 378, 399, 483
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	9 cut(s)	85, 103, 205, 214, 309, 336, 378, 399, 483
FspBI	CTAG	2 cut(s)	510, 678
GluI	GCNGC	9 cut(s)	85, 103, 205, 214, 309, 336, 378, 399, 483
GsaI	CCCAGC	3 cut(s)	234, 696, 734
GsuI	CTGGAG	2 cut(s)	79, 588
HaeIII	GGCC	3 cut(s)	118, 292, 380
HapII	CCGG	2 cut(s)	15, 78
Hin1I	GRCGYC	1 cut(s)	594
Hin1II	CATG	3 cut(s)	52, 505, 749
HinfI	GANTC	3 cut(s)	316, 553, 656
HpaII	CCGG	2 cut(s)	15, 78
Hpy166II	GTNNAC	2 cut(s)	23, 625
Hpy188I	TCNGA	3 cut(s)	169, 413, 702
Hpy188III	TCNNGA	7 cut(s)	96, 259, 320, 352, 361, 557, 650
Hpy8I	GTNNAC	2 cut(s)	23, 625
Hpy99I	CGWCG	2 cut(s)	203, 599
HpyAV	CCTTC	4 cut(s)	122, 142, 256, 557
HpyCH4IV	ACGT	3 cut(s)	179, 356, 594
HpyCH4V	TGCA	2 cut(s)	192, 482
HpyF10VI	GCNNNNNNNGC	7 cut(s)	189, 210, 213, 235, 374, 383, 488
HpyF3I	CTNAG	1 cut(s)	492
HpySE526I	ACGT	3 cut(s)	179, 356, 594
Hsp92I	GRCGYC	1 cut(s)	594
Hsp92II	CATG	3 cut(s)	52, 505, 749
KflI	GGGWCCC	1 cut(s)	322
KspI	CCGCGG	1 cut(s)	329
Kzo9I	GATC	5 cut(s)	195, 255, 402, 598, 688
LmnI	GCTCC	2 cut(s)	37, 667
Lsp1109I	GCAGC	5 cut(s)	114, 191, 200, 385, 494
MaeI	CTAG	2 cut(s)	510, 678
MaeII	ACGT	3 cut(s)	179, 356, 594
MalI	GATC	5 cut(s)	197, 257, 404, 600, 690
MbiI	CCGCTC	1 cut(s)	34
MboI	GATC	5 cut(s)	195, 255, 402, 598, 688
MboII	GAAGA	5 cut(s)	214, 262, 572, 602, 698
MflI	RGATCY	1 cut(s)	688
MhlI	GDGCHC	1 cut(s)	42
MlsI	TGGCCA	1 cut(s)	118
MluCI	AATT	6 cut(s)	162, 535, 666, 751, 789, 808
MluNI	TGGCCA	1 cut(s)	118
Mox20I	TGGCCA	1 cut(s)	118
MscI	TGGCCA	1 cut(s)	118
MseI	TTAA	2 cut(s)	63, 582
MslI	CAYNNNNRTG	1 cut(s)	835
Msp20I	TGGCCA	1 cut(s)	118
MspA1I	CMGCKG	2 cut(s)	105, 328
MspI	CCGG	2 cut(s)	15, 78
MspR9I	CCNGG	4 cut(s)	16, 79, 185, 382
MvaI	CCWGG	2 cut(s)	185, 382
MvnI	CGCG	1 cut(s)	328
MwoI	GCNNNNNNNGC	7 cut(s)	189, 210, 213, 235, 374, 383, 488
NciI	CCSGG	2 cut(s)	16, 79
NdeII	GATC	5 cut(s)	195, 255, 402, 598, 688
NlaIII	CATG	3 cut(s)	52, 505, 749
NlaIV	GGNNCC	2 cut(s)	323, 324
NmeAIII	GCCGAG	1 cut(s)	189
PcsI	WCGNNNNNNNCGW	1 cut(s)	594
PfeI	GAWTC	3 cut(s)	316, 553, 656
PkrI	GCNGC	9 cut(s)	86, 104, 206, 215, 310, 337, 379, 400, 484
Ple19I	CGATCG	1 cut(s)	405
PpuMI	RGGWCCY	1 cut(s)	322
Psp5II	RGGWCCY	1 cut(s)	322
Psp6I	CCWGG	2 cut(s)	183, 380
PspFI	CCCAGC	3 cut(s)	230, 692, 730
PspGI	CCWGG	2 cut(s)	183, 380
PspN4I	GGNNCC	2 cut(s)	323, 324
PspPI	GGNCC	1 cut(s)	322
PspPPI	RGGWCCY	1 cut(s)	322
PsuI	RGATCY	1 cut(s)	688
PvuI	CGATCG	1 cut(s)	405
RsaI	GTAC	2 cut(s)	272, 626
RsaNI	GTAC	2 cut(s)	271, 625
RseI	CAYNNNNRTG	1 cut(s)	835
SacII	CCGCGG	1 cut(s)	329
SaqAI	TTAA	2 cut(s)	63, 582
SatI	GCNGC	9 cut(s)	85, 103, 205, 214, 309, 336, 378, 399, 483
Sau3AI	GATC	5 cut(s)	195, 255, 402, 598, 688
Sau96I	GGNCC	1 cut(s)	322
ScrFI	CCNGG	4 cut(s)	16, 79, 185, 382
SduI	GDGCHC	1 cut(s)	42
Sfr303I	CCGCGG	1 cut(s)	329
SgrBI	CCGCGG	1 cut(s)	329
SinI	GGWCC	1 cut(s)	322
SmiMI	CAYNNNNRTG	1 cut(s)	835
SpeI	ACTAGT	1 cut(s)	509
Sse9I	AATT	6 cut(s)	162, 535, 666, 751, 789, 808
SspMI	CTAG	2 cut(s)	510, 678
StyD4I	CCNGG	4 cut(s)	14, 77, 183, 380
TaiI	ACGT	3 cut(s)	182, 359, 597
TaqI	TCGA	4 cut(s)	126, 198, 405, 597
TasI	AATT	6 cut(s)	162, 535, 666, 751, 789, 808
TatI	WGTACW	1 cut(s)	270
TauI	GCSGC	4 cut(s)	87, 311, 338, 380
TfiI	GAWTC	3 cut(s)	316, 553, 656
Tru1I	TTAA	2 cut(s)	63, 582
Tru9I	TTAA	2 cut(s)	63, 582
TscAI	CASTG	2 cut(s)	454, 580
TseI	GCWGC	5 cut(s)	102, 204, 213, 398, 482
TspDTI	ATGAA	3 cut(s)	629, 699, 830
TspRI	CASTG	2 cut(s)	454, 580
VpaK11BI	GGWCC	1 cut(s)	322
XagI	CCTNNNNNAGG	1 cut(s)	65
XapI	RAATTY	1 cut(s)	808
XspI	CTAG	2 cut(s)	510, 678
ZraI	GACGTC	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.