Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000568

Physical Location & Seq

Genomic Coordinates Forward (+)

39570326 .. 39570895

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00113840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGCGCTCTCATTCCGGCGGTTTACCCAAGGACCAGGAGCACGCTATCATTGTCTCAGCCCTGAAACAGGTAGTCCGCGGTGGCGTTAGAACAAACAATGCACCCTCCCAGGCCCATCCACCGCCGCCGCAGCTCGATTATGCCTCATCATCATCACCTGATCCTCCAACCGGGGGCACCGATCAAGTCGTGATACCGTATTCGGATTCTGACACTTGTCAGGTGTGTAAGATGGAGATGGACGATTGCCTTGGCTGTGGTTTGTTCCCCCCAAGCGAGCAATACAAAGGGAAAGGGAAGAAGATGAAGACTAGCAAGTACAGGGGAGTGCGGCAGAGACCAGGGGGCAAATGGGCTGCGGAGATTCGGGACCCTCGTCGGGCGGTTCGGGTTTGGCTAGGGACCTTTCCGACGGCGGAGGAGGCAGCCAGGGCTTATGACAATGCGGCCCTCGAGTTTCGTGGAGCTAACGGAGCTAAGCTAAACTTCCCGCCATCCTCGGACACTGGAACTACCAGTAGAGCATTGACTGATGAGATCAAAAGTCAAAACAAGTCCAGGAAGTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

189

Amino Acids

20.46

Weight (kDa)

9.43

Isoelectric Point (pI)

45.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	105 - 155	6.8e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20350 AT5G67000 AT5G67010
fragaria_vesca	FvH4_1g15960
malus_domestica	MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica	Prupe.7G134100_v2.0.a1
pyrus_communis	pycom02g13800 pycom15g24630
rosa_chinensis	RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata	RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora	Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa	Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha	Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana	Rw1G018940 Rw2G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	176
AccII	CGCG	1 cut(s)	78
AclWI	GGATC	1 cut(s)	155
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	4 cut(s)	67, 170, 173, 379
AjnI	CCWGG	5 cut(s)	33, 108, 340, 428, 557
AluBI	AGCT	4 cut(s)	133, 467, 476, 481
AluI	AGCT	4 cut(s)	133, 467, 476, 481
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	2 cut(s)	58, 331
AlwI	GGATC	1 cut(s)	155
Ama87I	CYCGRG	1 cut(s)	452
AoxI	GGCC	2 cut(s)	111, 447
ApeKI	GCWGC	3 cut(s)	130, 356, 425
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	5 cut(s)	31, 112, 370, 402, 448
AsuC2I	CCSGG	1 cut(s)	172
AsuHPI	GGTGA	1 cut(s)	147
AvaI	CYCGRG	1 cut(s)	452
AvaII	GGWCC	3 cut(s)	31, 370, 402
BaeGI	GKGCMC	1 cut(s)	179
BanI	GGYRCC	1 cut(s)	176
BbsI	GAAGAC	1 cut(s)	314
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	3 cut(s)	142, 343, 437
BccI	CCATC	4 cut(s)	123, 226, 232, 502
BceAI	ACGGC	1 cut(s)	429
BciT130I	CCWGG	5 cut(s)	35, 110, 342, 430, 559
BcnI	CCSGG	1 cut(s)	172
BcoDI	GTCTC	2 cut(s)	58, 331
BfaI	CTAG	2 cut(s)	312, 398
BisI	GCNGC	7 cut(s)	125, 128, 131, 332, 357, 426, 447
BlpI	GCTNAGC	1 cut(s)	477
BlsI	GCNGC	7 cut(s)	126, 129, 132, 333, 358, 427, 448
Bme1390I	CCNGG	6 cut(s)	35, 110, 172, 342, 430, 559
Bme18I	GGWCC	3 cut(s)	31, 370, 402
BmeT110I	CYCGRG	1 cut(s)	452
BmgT120I	GGNCC	5 cut(s)	31, 112, 370, 402, 448
BmiI	GGNNCC	4 cut(s)	178, 371, 372, 403
BmrFI	CCNGG	6 cut(s)	35, 110, 172, 342, 430, 559
BoxI	GACNNNNGTC	2 cut(s)	216, 375
BpiI	GAAGAC	1 cut(s)	314
Bpu1102I	GCTNAGC	1 cut(s)	477
BpuMI	CCSGG	1 cut(s)	172
BsaI	GGTCTC	1 cut(s)	331
BsaJI	CCNNGG	8 cut(s)	27, 76, 108, 171, 250, 341, 429, 498
Bsc4I	CCNNNNNNNGG	4 cut(s)	67, 170, 173, 379
Bse1I	ACTGG	2 cut(s)	511, 516
BseBI	CCWGG	5 cut(s)	35, 110, 342, 430, 559
BseDI	CCNNGG	8 cut(s)	27, 76, 108, 171, 250, 341, 429, 498
BseGI	GGATG	2 cut(s)	115, 494
BseLI	CCNNNNNNNGG	4 cut(s)	67, 170, 173, 379
BseMII	CTCAG	1 cut(s)	69
BseNI	ACTGG	2 cut(s)	511, 516
BseRI	GAGGAG	1 cut(s)	434
BseSI	GKGCMC	1 cut(s)	179
BseXI	GCAGC	3 cut(s)	142, 343, 437
Bsh1236I	CGCG	1 cut(s)	78
BshFI	GGCC	2 cut(s)	113, 449
BshNI	GGYRCC	1 cut(s)	176
BsiHKAI	GWGCWC	1 cut(s)	42
BsiHKCI	CYCGRG	1 cut(s)	452
BsiSI	CCGG	2 cut(s)	15, 171
BslFI	GGGAC	2 cut(s)	383, 415
BslI	CCNNNNNNNGG	4 cut(s)	67, 170, 173, 379
BsmAI	GTCTC	2 cut(s)	58, 331
BsmFI	GGGAC	2 cut(s)	383, 415
BsnI	GGCC	2 cut(s)	113, 449
Bso31I	GGTCTC	1 cut(s)	331
BsoBI	CYCGRG	1 cut(s)	452
Bsp1286I	GDGCHC	2 cut(s)	42, 179
Bsp143I	GATC	3 cut(s)	160, 181, 537
Bsp1720I	GCTNAGC	1 cut(s)	477
BspANI	GGCC	2 cut(s)	113, 449
BspCNI	CTCAG	1 cut(s)	68
BspFNI	CGCG	1 cut(s)	78
BspLI	GGNNCC	4 cut(s)	178, 371, 372, 403
BspPI	GGATC	1 cut(s)	155
BspT107I	GGYRCC	1 cut(s)	176
BspTNI	GGTCTC	1 cut(s)	331
BsrI	ACTGG	2 cut(s)	511, 516
BssECI	CCNNGG	8 cut(s)	27, 76, 108, 171, 250, 341, 429, 498
BssMI	GATC	3 cut(s)	160, 181, 537
BssT1I	CCWWGG	2 cut(s)	27, 250
Bst2UI	CCWGG	5 cut(s)	35, 110, 342, 430, 559
Bst4CI	ACNGT	1 cut(s)	198
BstC8I	GCNNGC	2 cut(s)	42, 278
BstDEI	CTNAG	2 cut(s)	55, 477
BstDSI	CCRYGG	1 cut(s)	76
BstENI	CCTNNNNNAGG	1 cut(s)	65
BstF5I	GGATG	2 cut(s)	115, 494
BstFNI	CGCG	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	3 cut(s)	163, 184, 540
BstMAI	GTCTC	2 cut(s)	58, 331
BstMBI	GATC	3 cut(s)	160, 181, 537
BstMWI	GCNNNNNNNGC	4 cut(s)	130, 422, 431, 473
BstNI	CCWGG	5 cut(s)	35, 110, 342, 430, 559
BstPAI	GACNNNNGTC	2 cut(s)	216, 375
BstSCI	CCNGG	6 cut(s)	33, 108, 170, 340, 428, 557
BstSLI	GKGCMC	1 cut(s)	179
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	3 cut(s)	142, 343, 437
BstV2I	GAAGAC	1 cut(s)	314
BsuRI	GGCC	2 cut(s)	113, 449
BtgI	CCRYGG	1 cut(s)	76
BtsCI	GGATG	2 cut(s)	115, 494
BtsIMutI	CAGTG	1 cut(s)	504
Cac8I	GCNNGC	2 cut(s)	42, 278
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	5 cut(s)	31, 112, 370, 402, 448
Cfr42I	CCGCGG	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	319
CviQI	GTAC	1 cut(s)	319
DdeI	CTNAG	2 cut(s)	55, 477
DpnI	GATC	3 cut(s)	162, 183, 539
DpnII	GATC	3 cut(s)	160, 181, 537
EciI	GGCGGA	1 cut(s)	431
Eco130I	CCWWGG	2 cut(s)	27, 250
Eco31I	GGTCTC	1 cut(s)	331
Eco47I	GGWCC	3 cut(s)	31, 370, 402
Eco88I	CYCGRG	1 cut(s)	452
EcoNI	CCTNNNNNAGG	1 cut(s)	65
EcoO109I	RGGNCCY	2 cut(s)	370, 402
EcoRII	CCWGG	5 cut(s)	33, 108, 340, 428, 557
EcoT14I	CCWWGG	2 cut(s)	27, 250
ErhI	CCWWGG	2 cut(s)	27, 250
FaiI	YATR	2 cut(s)	141, 438
FalI	AAGNNNNNCTT	2 cut(s)	470, 502
FaqI	GGGAC	2 cut(s)	383, 415
FauI	CCCGC	1 cut(s)	498
Fnu4HI	GCNGC	7 cut(s)	125, 128, 131, 332, 357, 426, 447
FokI	GGATG	2 cut(s)	102, 481
Fsp4HI	GCNGC	7 cut(s)	125, 128, 131, 332, 357, 426, 447
FspBI	CTAG	2 cut(s)	312, 398
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	7 cut(s)	125, 128, 131, 332, 357, 426, 447
HaeIII	GGCC	2 cut(s)	113, 449
HapII	CCGG	2 cut(s)	15, 171
HhaI	GCGC	1 cut(s)	6
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HinfI	GANTC	2 cut(s)	206, 364
HpaII	CCGG	2 cut(s)	15, 171
HphI	GGTGA	1 cut(s)	147
Hpy166II	GTNNAC	1 cut(s)	23
Hpy188I	TCNGA	4 cut(s)	205, 211, 411, 502
Hpy188III	TCNNGA	2 cut(s)	190, 368
Hpy8I	GTNNAC	1 cut(s)	23
Hpy99I	CGWCG	2 cut(s)	381, 415
HpyCH4III	ACNGT	1 cut(s)	198
HpyCH4V	TGCA	1 cut(s)	101
HpyF10VI	GCNNNNNNNGC	4 cut(s)	130, 422, 431, 473
HpyF3I	CTNAG	2 cut(s)	55, 477
HspAI	GCGC	1 cut(s)	4
KflI	GGGWCCC	1 cut(s)	370
KspI	CCGCGG	1 cut(s)	79
Kzo9I	GATC	3 cut(s)	160, 181, 537
LmnI	GCTCC	3 cut(s)	37, 464, 473
Lsp1109I	GCAGC	3 cut(s)	142, 343, 437
MaeI	CTAG	2 cut(s)	312, 398
MalI	GATC	3 cut(s)	162, 183, 539
MboI	GATC	3 cut(s)	160, 181, 537
MboII	GAAGA	3 cut(s)	310, 313, 319
MhlI	GDGCHC	2 cut(s)	42, 179
MmeI	TCCRAC	2 cut(s)	191, 434
MnlI	CCTC	8 cut(s)	115, 154, 174, 384, 412, 415, 461, 508
MspA1I	CMGCKG	1 cut(s)	78
MspI	CCGG	2 cut(s)	15, 171
MspR9I	CCNGG	6 cut(s)	35, 110, 172, 342, 430, 559
MvaI	CCWGG	5 cut(s)	35, 110, 342, 430, 559
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	4 cut(s)	130, 422, 431, 473
NciI	CCSGG	1 cut(s)	172
NdeII	GATC	3 cut(s)	160, 181, 537
NlaIV	GGNNCC	4 cut(s)	178, 371, 372, 403
PaeR7I	CTCGAG	1 cut(s)	452
PcsI	WCGNNNNNNNCGW	1 cut(s)	373
PfeI	GAWTC	2 cut(s)	206, 364
PfoI	TCCNGGA	1 cut(s)	557
PkrI	GCNGC	7 cut(s)	126, 129, 132, 333, 358, 427, 448
PpuMI	RGGWCCY	2 cut(s)	370, 402
PshAI	GACNNNNGTC	2 cut(s)	216, 375
Psp5II	RGGWCCY	2 cut(s)	370, 402
Psp6I	CCWGG	5 cut(s)	33, 108, 340, 428, 557
PspGI	CCWGG	5 cut(s)	33, 108, 340, 428, 557
PspN4I	GGNNCC	4 cut(s)	178, 371, 372, 403
PspPI	GGNCC	5 cut(s)	31, 112, 370, 402, 448
PspPPI	RGGWCCY	2 cut(s)	370, 402
PspXI	VCTCGAGB	1 cut(s)	452
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
SacII	CCGCGG	1 cut(s)	79
SatI	GCNGC	7 cut(s)	125, 128, 131, 332, 357, 426, 447
Sau3AI	GATC	3 cut(s)	160, 181, 537
Sau96I	GGNCC	5 cut(s)	31, 112, 370, 402, 448
ScrFI	CCNGG	6 cut(s)	35, 110, 172, 342, 430, 559
SduI	GDGCHC	2 cut(s)	42, 179
SetI	ASST	8 cut(s)	72, 135, 160, 225, 407, 469, 478, 483
Sfr274I	CTCGAG	1 cut(s)	452
Sfr303I	CCGCGG	1 cut(s)	79
SgrBI	CCGCGG	1 cut(s)	79
SinI	GGWCC	3 cut(s)	31, 370, 402
SlaI	CTCGAG	1 cut(s)	452
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
SspMI	CTAG	2 cut(s)	312, 398
StyD4I	CCNGG	6 cut(s)	33, 108, 170, 340, 428, 557
StyI	CCWWGG	2 cut(s)	27, 250
TaaI	ACNGT	1 cut(s)	198
TaqI	TCGA	2 cut(s)	135, 453
TatI	WGTACW	1 cut(s)	318
TauI	GCSGC	4 cut(s)	127, 130, 334, 449
TfiI	GAWTC	2 cut(s)	206, 364
TscAI	CASTG	1 cut(s)	511
TseI	GCWGC	3 cut(s)	130, 356, 425
TspDTI	ATGAA	1 cut(s)	320
TspGWI	ACGGA	1 cut(s)	486
TspRI	CASTG	1 cut(s)	511
VpaK11BI	GGWCC	3 cut(s)	31, 370, 402
XagI	CCTNNNNNAGG	1 cut(s)	65
XcmI	CCANNNNNNNNNTGG	1 cut(s)	348
XhoI	CTCGAG	1 cut(s)	452
XspI	CTAG	2 cut(s)	312, 398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.