Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000568

Physical Location & Seq

Genomic Coordinates Forward (+)

76473683 .. 76474282

Gene Structure 600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00138360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGAAAAGCAGCGGGAGTAAAATGCCCTCGCATTCCGGCGGTTTACCCAAGGAGCAGGAGCACGCTATCATTGTCTCCACCCTGAAACGGGTAATCCGCTGTGGCGTTGGCACAGACAATGCACCCTCCCAGCCACGGCCGCCGTCGACGCCGCTCCCAGCAACTGGTGGCACCGATCAAGTGGTGATACCATTTTCGGATTGTGATGACACGTGTCAGGTATGTAAGATGGGGAAGGACGATTGCCTTGGCTGTGGTTTGTTCCCGCCAAGCGAGCAAGACAAAGGTAAAAAGGTGAAGACGAGCAAGTACAGGGGAGTGCGGCAGAGACCAGGAGGAAAATGGGCGGCGGAGATTCGGGACCCGCGTCGCGCGGTTCGGCTTTGGCTCGGGACTTTCCAGACGGAGGAGGAGGCAGCCAGGGCTTATGACACGAAGGCCCTCGAGTTTCGCGGAGCTGACAGAGCCAAGCTAAACTTCCCGCCGTCCTCGGACACTGGTACTACCAGTGGAGCAATGACTGATGAGACCAAAGTCCACCAAACAAGTCCAGTCGGAGAGAGCAGCGCTGCTGAGGAAGAAGAAGAGATGGGTCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

199

Amino Acids

21.41

Weight (kDa)

6.83

Isoelectric Point (pI)

52.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	102 - 152	4e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20350 AT5G67000 AT5G67010
fragaria_vesca	FvH4_1g15960
malus_domestica	MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica	Prupe.7G134100_v2.0.a1
pyrus_communis	pycom02g13800 pycom15g24630
rosa_chinensis	RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata	RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora	Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa	Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha	Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana	Rw1G018940 Rw2G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	170
AccB7I	CCANNNNNTGG	1 cut(s)	164
AccBSI	CCGCTC	1 cut(s)	154
AccI	GTMKAC	1 cut(s)	146
AccII	CGCG	4 cut(s)	367, 372, 374, 453
AcoI	YGGCCR	1 cut(s)	137
AcvI	CACGTG	1 cut(s)	213
AcyI	GRCGYC	1 cut(s)	149
AfaI	GTAC	2 cut(s)	311, 502
AfeI	AGCGCT	1 cut(s)	568
AfiI	CCNNNNNNNGG	5 cut(s)	87, 88, 135, 164, 406
AflIII	ACRYGT	2 cut(s)	210, 212
AjnI	CCWGG	2 cut(s)	331, 419
AjuI	GAANNNNNNNTTGG	2 cut(s)	461, 493
AluBI	AGCT	2 cut(s)	458, 472
AluI	AGCT	2 cut(s)	458, 472
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	3 cut(s)	79, 322, 521
AlwNI	CAGNNNCTG	1 cut(s)	164
Ama87I	CYCGRG	2 cut(s)	389, 443
Aor51HI	AGCGCT	1 cut(s)	568
AoxI	GGCC	2 cut(s)	137, 438
ApeKI	GCWGC	4 cut(s)	9, 416, 564, 569
AspLEI	GCGC	2 cut(s)	374, 569
AspS9I	GGNCC	3 cut(s)	361, 439, 593
AsuHPI	GGTGA	2 cut(s)	196, 307
AvaI	CYCGRG	2 cut(s)	389, 443
AvaII	GGWCC	2 cut(s)	361, 593
BanI	GGYRCC	1 cut(s)	170
BbrPI	CACGTG	1 cut(s)	213
BbsI	GAAGAC	1 cut(s)	305
Bbv12I	GWGCWC	1 cut(s)	63
BbvCI	CCTCAGC	1 cut(s)	573
BbvI	GCAGC	4 cut(s)	21, 428, 556, 576
BccI	CCATC	2 cut(s)	223, 583
BceAI	ACGGC	3 cut(s)	127, 152, 469
BciT130I	CCWGG	2 cut(s)	333, 421
BcoDI	GTCTC	3 cut(s)	79, 322, 521
BfoI	RGCGCY	1 cut(s)	570
BisI	GCNGC	8 cut(s)	10, 140, 152, 323, 348, 417, 565, 570
BlsI	GCNGC	8 cut(s)	11, 141, 153, 324, 349, 418, 566, 571
Bme1390I	CCNGG	2 cut(s)	333, 421
Bme18I	GGWCC	2 cut(s)	361, 593
BmeT110I	CYCGRG	2 cut(s)	389, 443
BmgT120I	GGNCC	3 cut(s)	361, 439, 593
BmiI	GGNNCC	4 cut(s)	172, 362, 363, 594
BmrFI	CCNGG	2 cut(s)	333, 421
BoxI	GACNNNNGTC	3 cut(s)	213, 366, 533
BpiI	GAAGAC	1 cut(s)	305
Bpu10I	CCTNAGC	1 cut(s)	573
BsaAI	YACGTR	1 cut(s)	213
BsaHI	GRCGYC	1 cut(s)	149
BsaI	GGTCTC	2 cut(s)	322, 521
BsaJI	CCNNGG	5 cut(s)	48, 134, 247, 420, 489
Bsc4I	CCNNNNNNNGG	5 cut(s)	87, 88, 135, 164, 406
Bse1I	ACTGG	4 cut(s)	169, 502, 507, 551
Bse3DI	GCAATG	1 cut(s)	522
BseBI	CCWGG	2 cut(s)	333, 421
BseDI	CCNNGG	5 cut(s)	48, 134, 247, 420, 489
BseLI	CCNNNNNNNGG	5 cut(s)	87, 88, 135, 164, 406
BseMI	GCAATG	1 cut(s)	522
BseMII	CTCAG	1 cut(s)	564
BseNI	ACTGG	4 cut(s)	169, 502, 507, 551
BseRI	GAGGAG	2 cut(s)	422, 425
BseX3I	CGGCCG	1 cut(s)	137
BseXI	GCAGC	4 cut(s)	21, 428, 556, 576
BseYI	CCCAGC	2 cut(s)	129, 157
Bsh1236I	CGCG	4 cut(s)	367, 372, 374, 453
Bsh1285I	CGRYCG	1 cut(s)	140
BshFI	GGCC	2 cut(s)	139, 440
BshNI	GGYRCC	1 cut(s)	170
BsiEI	CGRYCG	1 cut(s)	140
BsiHKAI	GWGCWC	1 cut(s)	63
BsiHKCI	CYCGRG	2 cut(s)	389, 443
BsiSI	CCGG	1 cut(s)	36
BslFI	GGGAC	2 cut(s)	374, 406
BslI	CCNNNNNNNGG	5 cut(s)	87, 88, 135, 164, 406
BsmAI	GTCTC	3 cut(s)	79, 322, 521
BsmFI	GGGAC	2 cut(s)	374, 406
BsmI	GAATGC	1 cut(s)	31
BsnI	GGCC	2 cut(s)	139, 440
Bso31I	GGTCTC	2 cut(s)	322, 521
BsoBI	CYCGRG	2 cut(s)	389, 443
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	1 cut(s)	175
BspANI	GGCC	2 cut(s)	139, 440
BspCNI	CTCAG	1 cut(s)	565
BspFNI	CGCG	4 cut(s)	367, 372, 374, 453
BspLI	GGNNCC	4 cut(s)	172, 362, 363, 594
BspT107I	GGYRCC	1 cut(s)	170
BspTNI	GGTCTC	2 cut(s)	322, 521
BsrBI	CCGCTC	1 cut(s)	154
BsrDI	GCAATG	1 cut(s)	522
BsrI	ACTGG	4 cut(s)	169, 502, 507, 551
BssECI	CCNNGG	5 cut(s)	48, 134, 247, 420, 489
BssMI	GATC	1 cut(s)	175
BssNI	GRCGYC	1 cut(s)	149
BssT1I	CCWWGG	2 cut(s)	48, 247
Bst2UI	CCWGG	2 cut(s)	333, 421
Bst6I	CTCTTC	1 cut(s)	579
BstACI	GRCGYC	1 cut(s)	149
BstBAI	YACGTR	1 cut(s)	213
BstC8I	GCNNGC	2 cut(s)	63, 275
BstDEI	CTNAG	1 cut(s)	573
BstDSI	CCRYGG	1 cut(s)	134
BstFNI	CGCG	4 cut(s)	367, 372, 374, 453
BstH2I	RGCGCY	1 cut(s)	570
BstHHI	GCGC	2 cut(s)	374, 569
BstKTI	GATC	1 cut(s)	178
BstMAI	GTCTC	3 cut(s)	79, 322, 521
BstMBI	GATC	1 cut(s)	175
BstMCI	CGRYCG	1 cut(s)	140
BstMWI	GCNNNNNNNGC	5 cut(s)	139, 148, 274, 422, 464
BstNI	CCWGG	2 cut(s)	333, 421
BstPAI	GACNNNNGTC	3 cut(s)	213, 366, 533
BstSCI	CCNGG	2 cut(s)	331, 419
BstUI	CGCG	4 cut(s)	367, 372, 374, 453
BstV1I	GCAGC	4 cut(s)	21, 428, 556, 576
BstV2I	GAAGAC	1 cut(s)	305
BstZI	CGGCCG	1 cut(s)	137
BsuRI	GGCC	2 cut(s)	139, 440
BtgI	CCRYGG	1 cut(s)	134
BtsIMutI	CAGTG	2 cut(s)	495, 514
Cac8I	GCNNGC	2 cut(s)	63, 275
CaiI	CAGNNNCTG	1 cut(s)	164
CfoI	GCGC	2 cut(s)	374, 569
Cfr13I	GGNCC	3 cut(s)	361, 439, 593
CseI	GACGC	2 cut(s)	157, 356
Csp6I	GTAC	2 cut(s)	310, 501
CviQI	GTAC	2 cut(s)	310, 501
DdeI	CTNAG	1 cut(s)	573
DpnI	GATC	1 cut(s)	177
DpnII	GATC	1 cut(s)	175
EaeI	YGGCCR	1 cut(s)	137
EagI	CGGCCG	1 cut(s)	137
Eam1104I	CTCTTC	1 cut(s)	579
EarI	CTCTTC	1 cut(s)	579
EciI	GGCGGA	1 cut(s)	365
EclXI	CGGCCG	1 cut(s)	137
Eco130I	CCWWGG	2 cut(s)	48, 247
Eco31I	GGTCTC	2 cut(s)	322, 521
Eco47I	GGWCC	2 cut(s)	361, 593
Eco47III	AGCGCT	1 cut(s)	568
Eco52I	CGGCCG	1 cut(s)	137
Eco72I	CACGTG	1 cut(s)	213
Eco88I	CYCGRG	2 cut(s)	389, 443
EcoO109I	RGGNCCY	2 cut(s)	361, 439
EcoRII	CCWGG	2 cut(s)	331, 419
EcoT14I	CCWWGG	2 cut(s)	48, 247
ErhI	CCWWGG	2 cut(s)	48, 247
FaiI	YATR	2 cut(s)	223, 429
FalI	AAGNNNNNCTT	2 cut(s)	461, 493
FaqI	GGGAC	2 cut(s)	374, 406
FauI	CCCGC	4 cut(s)	5, 273, 372, 489
FblI	GTMKAC	1 cut(s)	146
Fnu4HI	GCNGC	8 cut(s)	10, 140, 152, 323, 348, 417, 565, 570
Fsp4HI	GCNGC	8 cut(s)	10, 140, 152, 323, 348, 417, 565, 570
GlaI	GCGC	2 cut(s)	373, 568
GluI	GCNGC	8 cut(s)	10, 140, 152, 323, 348, 417, 565, 570
GsaI	CCCAGC	2 cut(s)	133, 161
HaeII	RGCGCY	1 cut(s)	570
HaeIII	GGCC	2 cut(s)	139, 440
HapII	CCGG	1 cut(s)	36
HgaI	GACGC	2 cut(s)	157, 356
HhaI	GCGC	2 cut(s)	374, 569
Hin1I	GRCGYC	1 cut(s)	149
Hin6I	GCGC	2 cut(s)	372, 567
HinP1I	GCGC	2 cut(s)	372, 567
HincII	GTYRAC	1 cut(s)	147
HindII	GTYRAC	1 cut(s)	147
HinfI	GANTC	1 cut(s)	355
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	2 cut(s)	196, 307
Hpy166II	GTNNAC	3 cut(s)	44, 147, 538
Hpy188I	TCNGA	3 cut(s)	199, 493, 557
Hpy188III	TCNNGA	3 cut(s)	359, 391, 400
Hpy8I	GTNNAC	3 cut(s)	44, 147, 538
Hpy99I	CGWCG	3 cut(s)	148, 151, 372
HpyAV	CCTTC	2 cut(s)	229, 430
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	1 cut(s)	122
HpyF10VI	GCNNNNNNNGC	5 cut(s)	139, 148, 274, 422, 464
HpyF3I	CTNAG	1 cut(s)	573
HpySE526I	ACGT	1 cut(s)	212
Hsp92I	GRCGYC	1 cut(s)	149
HspAI	GCGC	2 cut(s)	372, 567
KflI	GGGWCCC	1 cut(s)	361
Kzo9I	GATC	1 cut(s)	175
LmnI	GCTCC	5 cut(s)	52, 58, 159, 455, 512
Lsp1109I	GCAGC	4 cut(s)	21, 428, 556, 576
MaeII	ACGT	1 cut(s)	212
MalI	GATC	1 cut(s)	177
MbiI	CCGCTC	1 cut(s)	154
MboI	GATC	1 cut(s)	175
MboII	GAAGA	4 cut(s)	310, 590, 593, 596
MhlI	GDGCHC	1 cut(s)	63
MmeI	TCCRAC	1 cut(s)	535
MnlI	CCTC	9 cut(s)	37, 136, 329, 400, 403, 406, 452, 499, 568
MspA1I	CMGCKG	2 cut(s)	12, 99
MspI	CCGG	1 cut(s)	36
MspR9I	CCNGG	2 cut(s)	333, 421
Mva1269I	GAATGC	1 cut(s)	31
MvaI	CCWGG	2 cut(s)	333, 421
MvnI	CGCG	4 cut(s)	367, 372, 374, 453
MwoI	GCNNNNNNNGC	5 cut(s)	139, 148, 274, 422, 464
NdeII	GATC	1 cut(s)	175
NlaIV	GGNNCC	4 cut(s)	172, 362, 363, 594
PaeR7I	CTCGAG	1 cut(s)	443
PcsI	WCGNNNNNNNCGW	1 cut(s)	364
PctI	GAATGC	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	355
PflMI	CCANNNNNTGG	1 cut(s)	164
PkrI	GCNGC	8 cut(s)	11, 141, 153, 324, 349, 418, 566, 571
PmaCI	CACGTG	1 cut(s)	213
PmlI	CACGTG	1 cut(s)	213
Ppu21I	YACGTR	1 cut(s)	213
PpuMI	RGGWCCY	1 cut(s)	361
PshAI	GACNNNNGTC	3 cut(s)	213, 366, 533
Psp5II	RGGWCCY	1 cut(s)	361
Psp6I	CCWGG	2 cut(s)	331, 419
PspCI	CACGTG	1 cut(s)	213
PspFI	CCCAGC	2 cut(s)	129, 157
PspGI	CCWGG	2 cut(s)	331, 419
PspN4I	GGNNCC	4 cut(s)	172, 362, 363, 594
PspPI	GGNCC	3 cut(s)	361, 439, 593
PspPPI	RGGWCCY	1 cut(s)	361
PspXI	VCTCGAGB	1 cut(s)	443
PstNI	CAGNNNCTG	1 cut(s)	164
RsaI	GTAC	2 cut(s)	311, 502
RsaNI	GTAC	2 cut(s)	310, 501
SalI	GTCGAC	1 cut(s)	145
SatI	GCNGC	8 cut(s)	10, 140, 152, 323, 348, 417, 565, 570
Sau3AI	GATC	1 cut(s)	175
Sau96I	GGNCC	3 cut(s)	361, 439, 593
ScrFI	CCNGG	2 cut(s)	333, 421
SduI	GDGCHC	1 cut(s)	63
SetI	ASST	6 cut(s)	215, 222, 289, 297, 460, 474
Sfr274I	CTCGAG	1 cut(s)	443
SgrDI	CGTCGACG	1 cut(s)	145
SinI	GGWCC	2 cut(s)	361, 593
SlaI	CTCGAG	1 cut(s)	443
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
StyD4I	CCNGG	2 cut(s)	331, 419
StyI	CCWWGG	2 cut(s)	48, 247
TaiI	ACGT	1 cut(s)	215
TaqI	TCGA	2 cut(s)	146, 444
TatI	WGTACW	1 cut(s)	309
TauI	GCSGC	4 cut(s)	142, 154, 325, 350
TfiI	GAWTC	1 cut(s)	355
TscAI	CASTG	2 cut(s)	502, 514
TseI	GCWGC	4 cut(s)	9, 416, 564, 569
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	419, 585
TspRI	CASTG	2 cut(s)	502, 514
Van91I	CCANNNNNTGG	1 cut(s)	164
VpaK11BI	GGWCC	2 cut(s)	361, 593
XcmI	CCANNNNNNNNNTGG	1 cut(s)	339
XhoI	CTCGAG	1 cut(s)	443
XmiI	GTMKAC	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.