Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000568

Physical Location & Seq

Genomic Coordinates Forward (+)

41510911 .. 41511537

Gene Structure 627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G018940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGCCCTCACATTCCGGCGGTTTACCCAAGGAGCAGGAGCACGCTATCATTGTCTCCGCCCTGAAACAGGTAGTCCGCGGTCGCACCACCCAGCCACCGCCGCCGCAGCTCCATTATGCCTCATCATCACTTGGTGGCACCGATCAAGTCGTGATACCTTTTTCGGATTGTGACGCGTGTCAGGTATGTAATATGAAGATGGACGATTGCCTTGGCTGTGGTTTGTTCCGGCCAAGCGAGCAAGACGAAGGGAAAGGGAAAAAGATGAAGACAAGCAAGTACAGGGGAGTGCGGCAGAGACCAGGGGGGAAATGGGCTGCGGAGATTCGTGACCCGCGTCGAGCGGTTCGGGTTTGGCTCGGGACGTTTCAGACGGCGGAGGAGGCAGCCAGGGCTTATGACACGGCGGCGATCGAGTTCCGAGGAGAGAGAGCCAAGCTCAACTTCCCGCTAAGCAGTGAAGCTGGTACTACTACTACTGGTGCAGCATTGACTAGGCAAAGCATGGAGACTGGTGAGGTCAATCAAGTCACCGCGAGTTCTGTGAAGTCAGCGAATCAGGAAGAGGGACAGAGTAGTGATGTTAAGGACGAAGACATCGATCGCTTCGTCTGGGAAATGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

208

Amino Acids

22.77

Weight (kDa)

6.33

Isoelectric Point (pI)

50.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	92 - 142	1.1e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20350 AT5G67000 AT5G67010
fragaria_vesca	FvH4_1g15960
malus_domestica	MD02G1171300.v1.1 MD15G1283200.v1.1
prunus_persica	Prupe.7G134100_v2.0.a1
pyrus_communis	pycom02g13800 pycom15g24630
rosa_chinensis	RchiOBHm_Chr1g0349631 RchiOBHm_Chr2g0105221 RchiOBHm_Chr2g0105401 RchiOBHm_Chr2g0105421 RchiOBHm_Chr2g0105461 RchiOBHm_Chr2g0105481 RchiOBHm_Chr2g0105501 RchiOBHm_Chr2g0105521 RchiOBHm_Chr2g0130611
rosa_laevigata	RLG00000017410 RLG00000017411 RLG00000017421 RLG00000017424 RLG00000017427 RLG00000017428 RLG00000017430 RLG00000019140 RLG00000019141
rosa_multiflora	Rmu_co8006714.1_g000001 Rmu_co8096516.1_g000001 Rmu_co8328685.1_g000001 Rmu_sc0001051.1_g000001 Rmu_sc0001122.1_g000006 Rmu_sc0001407.1_g000003 Rmu_sc0001593.1_g000004 Rmu_sc0004768.1_g000002 Rmu_sc0004768.1_g000004 Rmu_sc0004768.1_g000006 Rmu_sc0005621.1_g000003 Rmu_sc0008529.1_g000003 Rmu_sc0008529.1_g000015 Rmu_sc0017668.1_g000003 Rmu_sc0018542.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113840 Rroxscaffold_2G00138130 Rroxscaffold_2G00138170 Rroxscaffold_2G00138190 Rroxscaffold_2G00138250 Rroxscaffold_2G00138360
rosa_rugosa	Rorug02G0127100 Rorug02G0127900 Rorug02G0292400 Rorug02G0292600
rosa_samantha	Rh1AG222300 Rh2AG177700 Rh2AG178800 Rh2AG179000 Rh2AG179400 Rh2AG179600 Rh2AG179800 Rh2AG343900 Rh2BG185900 Rh2BG187900 Rh2BG188200 Rh2BG188700 Rh2BG352300 Rh2CG182200 Rh2CG183200 Rh2CG183300 Rh2CG183400 Rh2CG183600 Rh2CG183700 Rh2CG183900 Rh2CG331000 Rh2DG183700 Rh2DG184600 Rh2DG184900 Rh2DG185200 Rh2DG185400 Rh2DG185600 Rh2DG370400
rosa_wichuraiana	Rw1G018940 Rw2G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	137
AccBSI	CCGCTC	1 cut(s)	344
AccII	CGCG	4 cut(s)	78, 176, 337, 536
AcoI	YGGCCR	1 cut(s)	230
AdeI	CACNNNGTG	1 cut(s)	134
AfaI	GTAC	2 cut(s)	281, 469
AfiI	CCNNNNNNNGG	1 cut(s)	67
AflIII	ACRYGT	1 cut(s)	174
AjnI	CCWGG	2 cut(s)	301, 389
AjuI	GAANNNNNNNTTGG	2 cut(s)	428, 460
AluBI	AGCT	3 cut(s)	109, 439, 464
AluI	AGCT	3 cut(s)	109, 439, 464
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	3 cut(s)	58, 292, 503
Ama87I	CYCGRG	1 cut(s)	359
AoxI	GGCC	1 cut(s)	230
ApeKI	GCWGC	4 cut(s)	106, 317, 386, 485
AsuHPI	GGTGA	2 cut(s)	523, 527
AvaI	CYCGRG	1 cut(s)	359
BanI	GGYRCC	1 cut(s)	137
BbsI	GAAGAC	2 cut(s)	275, 600
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	4 cut(s)	118, 304, 398, 497
BccI	CCATC	1 cut(s)	193
BceAI	ACGGC	2 cut(s)	390, 420
BciT130I	CCWGG	2 cut(s)	303, 391
BcoDI	GTCTC	3 cut(s)	58, 292, 503
BfaI	CTAG	1 cut(s)	495
BisI	GCNGC	8 cut(s)	101, 104, 107, 293, 318, 387, 408, 486
BlpI	GCTNAGC	1 cut(s)	452
BlsI	GCNGC	8 cut(s)	102, 105, 108, 294, 319, 388, 409, 487
Bme1390I	CCNGG	2 cut(s)	303, 391
BmeT110I	CYCGRG	1 cut(s)	359
BmiI	GGNNCC	1 cut(s)	139
BmrFI	CCNGG	2 cut(s)	303, 391
BoxI	GACNNNNGTC	2 cut(s)	177, 336
BpiI	GAAGAC	2 cut(s)	275, 600
BplI	GAGNNNNNCTC	2 cut(s)	423, 455
Bpu1102I	GCTNAGC	1 cut(s)	452
Bsa29I	ATCGAT	1 cut(s)	600
BsaI	GGTCTC	1 cut(s)	292
BsaJI	CCNNGG	6 cut(s)	27, 76, 211, 302, 390, 421
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse1I	ACTGG	2 cut(s)	484, 517
BseBI	CCWGG	2 cut(s)	303, 391
BseCI	ATCGAT	1 cut(s)	600
BseDI	CCNNGG	6 cut(s)	27, 76, 211, 302, 390, 421
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseNI	ACTGG	2 cut(s)	484, 517
BseRI	GAGGAG	2 cut(s)	395, 438
BseXI	GCAGC	4 cut(s)	118, 304, 398, 497
BseYI	CCCAGC	1 cut(s)	90
BsgI	GTGCAG	1 cut(s)	504
Bsh1236I	CGCG	4 cut(s)	78, 176, 337, 536
Bsh1285I	CGRYCG	3 cut(s)	82, 414, 604
BshFI	GGCC	1 cut(s)	232
BshNI	GGYRCC	1 cut(s)	137
BshVI	ATCGAT	1 cut(s)	600
BsiEI	CGRYCG	3 cut(s)	82, 414, 604
BsiHKAI	GWGCWC	1 cut(s)	42
BsiHKCI	CYCGRG	1 cut(s)	359
BsiSI	CCGG	2 cut(s)	15, 229
BslFI	GGGAC	2 cut(s)	376, 582
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmAI	GTCTC	3 cut(s)	58, 292, 503
BsmFI	GGGAC	2 cut(s)	376, 582
BsnI	GGCC	1 cut(s)	232
Bso31I	GGTCTC	1 cut(s)	292
BsoBI	CYCGRG	1 cut(s)	359
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	3 cut(s)	142, 411, 601
Bsp1720I	GCTNAGC	1 cut(s)	452
BspANI	GGCC	1 cut(s)	232
BspDI	ATCGAT	1 cut(s)	600
BspFNI	CGCG	4 cut(s)	78, 176, 337, 536
BspLI	GGNNCC	1 cut(s)	139
BspT107I	GGYRCC	1 cut(s)	137
BspTNI	GGTCTC	1 cut(s)	292
BsrBI	CCGCTC	1 cut(s)	344
BsrI	ACTGG	2 cut(s)	484, 517
BssECI	CCNNGG	6 cut(s)	27, 76, 211, 302, 390, 421
BssMI	GATC	3 cut(s)	142, 411, 601
BssT1I	CCWWGG	2 cut(s)	27, 211
Bst2UI	CCWGG	2 cut(s)	303, 391
Bst6I	CTCTTC	1 cut(s)	558
BstC8I	GCNNGC	2 cut(s)	42, 239
BstDEI	CTNAG	1 cut(s)	452
BstDSI	CCRYGG	1 cut(s)	76
BstENI	CCTNNNNNAGG	1 cut(s)	65
BstFNI	CGCG	4 cut(s)	78, 176, 337, 536
BstKTI	GATC	3 cut(s)	145, 414, 604
BstMAI	GTCTC	3 cut(s)	58, 292, 503
BstMBI	GATC	3 cut(s)	142, 411, 601
BstMCI	CGRYCG	3 cut(s)	82, 414, 604
BstMWI	GCNNNNNNNGC	5 cut(s)	100, 106, 238, 383, 392
BstNI	CCWGG	2 cut(s)	303, 391
BstPAI	GACNNNNGTC	2 cut(s)	177, 336
BstSCI	CCNGG	2 cut(s)	301, 389
BstUI	CGCG	4 cut(s)	78, 176, 337, 536
BstV1I	GCAGC	4 cut(s)	118, 304, 398, 497
BstV2I	GAAGAC	2 cut(s)	275, 600
Bsu15I	ATCGAT	1 cut(s)	600
BsuRI	GGCC	1 cut(s)	232
BsuTUI	ATCGAT	1 cut(s)	600
BtgI	CCRYGG	1 cut(s)	76
BtsI	GCAGTG	1 cut(s)	463
BtsIMutI	CAGTG	1 cut(s)	463
Cac8I	GCNNGC	2 cut(s)	42, 239
Cfr42I	CCGCGG	1 cut(s)	79
ClaI	ATCGAT	1 cut(s)	600
CseI	GACGC	2 cut(s)	182, 326
Csp6I	GTAC	2 cut(s)	280, 468
CviAII	CATG	1 cut(s)	505
CviQI	GTAC	2 cut(s)	280, 468
DdeI	CTNAG	1 cut(s)	452
DpnI	GATC	3 cut(s)	144, 413, 603
DpnII	GATC	3 cut(s)	142, 411, 601
DraIII	CACNNNGTG	1 cut(s)	134
EaeI	YGGCCR	1 cut(s)	230
Eam1104I	CTCTTC	1 cut(s)	558
EarI	CTCTTC	1 cut(s)	558
EciI	GGCGGA	2 cut(s)	46, 392
Eco130I	CCWWGG	2 cut(s)	27, 211
Eco31I	GGTCTC	1 cut(s)	292
Eco88I	CYCGRG	1 cut(s)	359
EcoNI	CCTNNNNNAGG	1 cut(s)	65
EcoRII	CCWGG	2 cut(s)	301, 389
EcoT14I	CCWWGG	2 cut(s)	27, 211
ErhI	CCWWGG	2 cut(s)	27, 211
FaeI	CATG	1 cut(s)	508
FaiI	YATR	5 cut(s)	117, 187, 194, 399, 506
FalI	AAGNNNNNCTT	2 cut(s)	428, 460
FaqI	GGGAC	2 cut(s)	376, 582
FatI	CATG	1 cut(s)	504
FauI	CCCGC	2 cut(s)	342, 456
Fnu4HI	GCNGC	8 cut(s)	101, 104, 107, 293, 318, 387, 408, 486
Fsp4HI	GCNGC	8 cut(s)	101, 104, 107, 293, 318, 387, 408, 486
FspBI	CTAG	1 cut(s)	495
GluI	GCNGC	8 cut(s)	101, 104, 107, 293, 318, 387, 408, 486
GsaI	CCCAGC	1 cut(s)	94
HaeIII	GGCC	1 cut(s)	232
HapII	CCGG	2 cut(s)	15, 229
HgaI	GACGC	2 cut(s)	182, 326
Hin1II	CATG	1 cut(s)	508
HinfI	GANTC	2 cut(s)	325, 556
HpaII	CCGG	2 cut(s)	15, 229
HphI	GGTGA	2 cut(s)	523, 527
Hpy166II	GTNNAC	1 cut(s)	23
Hpy188I	TCNGA	3 cut(s)	166, 372, 422
Hpy188III	TCNNGA	4 cut(s)	151, 329, 361, 560
Hpy8I	GTNNAC	1 cut(s)	23
Hpy99I	CGWCG	1 cut(s)	342
HpyAV	CCTTC	1 cut(s)	242
HpyCH4IV	ACGT	1 cut(s)	365
HpyCH4V	TGCA	1 cut(s)	485
HpyF10VI	GCNNNNNNNGC	5 cut(s)	100, 106, 238, 383, 392
HpyF3I	CTNAG	1 cut(s)	452
HpySE526I	ACGT	1 cut(s)	365
Hsp92II	CATG	1 cut(s)	508
KspI	CCGCGG	1 cut(s)	79
Kzo9I	GATC	3 cut(s)	142, 411, 601
LmnI	GCTCC	3 cut(s)	31, 37, 114
Lsp1109I	GCAGC	4 cut(s)	118, 304, 398, 497
MaeI	CTAG	1 cut(s)	495
MaeII	ACGT	1 cut(s)	365
MaeIII	GTNAC	3 cut(s)	170, 329, 529
MalI	GATC	3 cut(s)	144, 413, 603
MbiI	CCGCTC	1 cut(s)	344
MboI	GATC	3 cut(s)	142, 411, 601
MboII	GAAGA	4 cut(s)	208, 280, 575, 605
MhlI	GDGCHC	1 cut(s)	42
MluI	ACGCGT	1 cut(s)	174
MnlI	CCTC	7 cut(s)	16, 130, 373, 376, 416, 511, 559
MseI	TTAA	2 cut(s)	585, 625
MspA1I	CMGCKG	1 cut(s)	78
MspI	CCGG	2 cut(s)	15, 229
MspR9I	CCNGG	2 cut(s)	303, 391
MvaI	CCWGG	2 cut(s)	303, 391
MvnI	CGCG	4 cut(s)	78, 176, 337, 536
MwoI	GCNNNNNNNGC	5 cut(s)	100, 106, 238, 383, 392
NdeII	GATC	3 cut(s)	142, 411, 601
NlaIII	CATG	1 cut(s)	508
NlaIV	GGNNCC	1 cut(s)	139
NmuCI	GTSAC	3 cut(s)	170, 329, 529
PcsI	WCGNNNNNNNCGW	3 cut(s)	334, 597, 606
PfeI	GAWTC	2 cut(s)	325, 556
PkrI	GCNGC	8 cut(s)	102, 105, 108, 294, 319, 388, 409, 487
Ple19I	CGATCG	2 cut(s)	414, 604
PshAI	GACNNNNGTC	2 cut(s)	177, 336
Psp6I	CCWGG	2 cut(s)	301, 389
PspFI	CCCAGC	1 cut(s)	90
PspGI	CCWGG	2 cut(s)	301, 389
PspN4I	GGNNCC	1 cut(s)	139
PvuI	CGATCG	2 cut(s)	414, 604
RsaI	GTAC	2 cut(s)	281, 469
RsaNI	GTAC	2 cut(s)	280, 468
SacII	CCGCGG	1 cut(s)	79
SaqAI	TTAA	2 cut(s)	585, 625
SatI	GCNGC	8 cut(s)	101, 104, 107, 293, 318, 387, 408, 486
Sau3AI	GATC	3 cut(s)	142, 411, 601
ScrFI	CCNGG	2 cut(s)	303, 391
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	8 cut(s)	72, 111, 160, 186, 368, 441, 466, 522
Sfr303I	CCGCGG	1 cut(s)	79
SgrBI	CCGCGG	1 cut(s)	79
SspMI	CTAG	1 cut(s)	495
StyD4I	CCNGG	2 cut(s)	301, 389
StyI	CCWWGG	2 cut(s)	27, 211
TaiI	ACGT	1 cut(s)	368
TaqI	TCGA	3 cut(s)	340, 414, 600
TatI	WGTACW	1 cut(s)	279
TauI	GCSGC	4 cut(s)	103, 106, 295, 410
TfiI	GAWTC	2 cut(s)	325, 556
Tru1I	TTAA	2 cut(s)	585, 625
Tru9I	TTAA	2 cut(s)	585, 625
TscAI	CASTG	1 cut(s)	463
TseFI	GTSAC	3 cut(s)	170, 329, 529
TseI	GCWGC	4 cut(s)	106, 317, 386, 485
Tsp45I	GTSAC	3 cut(s)	170, 329, 529
TspDTI	ATGAA	2 cut(s)	209, 281
TspRI	CASTG	1 cut(s)	463
XagI	CCTNNNNNAGG	1 cut(s)	65
XcmI	CCANNNNNNNNNTGG	1 cut(s)	309
XspI	CTAG	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.