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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G50370 AT3G50370 |
| fragaria_vesca | FvH4_5g28170 FvH4_5g28170 |
| malus_domestica | MD02G1171200.v1.1 MD15G1283100.v1.1 |
| prunus_persica | Prupe.7G134200_v2.0.a1 Prupe.7G134200_v2.0.a1 Prupe.7G134200_v2.0.a1 Prupe.7G134200_v2.0.a1 Prupe.7G134200_v2.0.a1 Prupe.7G134200_v2.0.a1 |
| pyrus_communis | pycom02g13790 pycom15g24620 |
| rosa_chinensis | RchiOBHm_Chr2g0105371 |
| rosa_laevigata | RLG00000017420 |
| rosa_multiflora | Rmu_sc0001407.1_g000023 |
| rosa_roxburghii | Rroxscaffold_2G00138260 |
| rosa_rugosa | Rorug02G0127800 Rorug02G0127900 Rorug02G0127900 Rorug02G0127900 |
| rosa_samantha | Rh2AG178600 Rh2BG187000 Rh2CG183100 Rh2DG184500 |
| rosa_wichuraiana | Rw2G014020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 6101, 6603 |
| AarI | CACCTGC | 1 cut(s) | 6158 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 2087, 3691 |
| Acc16I | TGCGCA | 1 cut(s) | 168 |
| Acc36I | ACCTGC | 3 cut(s) | 219, 6158, 6518 |
| Acc65I | GGTACC | 2 cut(s) | 5072, 5377 |
| AccB1I | GGYRCC | 5 cut(s) | 422, 5041, 5072, 5377, 6808 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 293, 4829, 6805 |
| AccI | GTMKAC | 4 cut(s) | 3695, 3905, 4583, 6504 |
| AccII | CGCG | 5 cut(s) | 251, 882, 3591, 4995, 5633 |
| AcoI | YGGCCR | 5 cut(s) | 58, 2858, 5260, 6275, 7333 |
| AdeI | CACNNNGTG | 2 cut(s) | 517, 7181 |
| AflIII | ACRYGT | 4 cut(s) | 2061, 3589, 6783, 6885 |
| AgeI | ACCGGT | 2 cut(s) | 114, 2318 |
| AhdI | GACNNNNNGTC | 4 cut(s) | 720, 2956, 3579, 4619 |
| AhlI | ACTAGT | 1 cut(s) | 838 |
| AjiI | CACGTC | 1 cut(s) | 1630 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2986, 3018 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 5041, 5073, 5878, 5910 |
| Alw21I | GWGCWC | 2 cut(s) | 2388, 7199 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 473, 1024, 3704, 5828 |
| Ama87I | CYCGRG | 5 cut(s) | 1269, 1578, 2149, 7043, 7050 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 17, 49 |
| AsiGI | ACCGGT | 2 cut(s) | 114, 2318 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1048, 4292, 7037 |
| Asp718I | GGTACC | 2 cut(s) | 5072, 5377 |
| AspA2I | CCTAGG | 1 cut(s) | 4514 |
| AspLEI | GCGC | 5 cut(s) | 169, 702, 882, 1719, 5633 |
| AsuC2I | CCSGG | 6 cut(s) | 12, 269, 825, 1579, 1580, 2594 |
| AvaI | CYCGRG | 5 cut(s) | 1269, 1578, 2149, 7043, 7050 |
| AvrII | CCTAGG | 1 cut(s) | 4514 |
| AxyI | CCTNAGG | 3 cut(s) | 1068, 3390, 3834 |
| BaeGI | GKGCMC | 1 cut(s) | 5487 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 5172, 5205 |
| BalI | TGGCCA | 4 cut(s) | 60, 5262, 6277, 7335 |
| BamHI | GGATCC | 3 cut(s) | 1582, 1725, 4114 |
| BanI | GGYRCC | 5 cut(s) | 422, 5041, 5072, 5377, 6808 |
| BanII | GRGCYC | 4 cut(s) | 257, 5408, 6385, 7199 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 2812, 2844, 6967, 6999 |
| BauI | CACGAG | 2 cut(s) | 2700, 5496 |
| BbsI | GAAGAC | 4 cut(s) | 1557, 4950, 5535, 5817 |
| Bbv12I | GWGCWC | 2 cut(s) | 2388, 7199 |
| BbvCI | CCTCAGC | 1 cut(s) | 2776 |
| BceAI | ACGGC | 5 cut(s) | 436, 512, 3152, 5652, 6066 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 5023, 5057, 6937, 6971 |
| BciVI | GTATCC | 2 cut(s) | 3218, 5911 |
| BclI | TGATCA | 3 cut(s) | 373, 1168, 6181 |
| BcnI | CCSGG | 6 cut(s) | 12, 269, 825, 1579, 1580, 2594 |
| BcuI | ACTAGT | 1 cut(s) | 838 |
| BfmI | CTRYAG | 9 cut(s) | 560, 710, 2746, 3696, 5106, 5316, 5739, 6249, 6525 |
| BfoI | RGCGCY | 1 cut(s) | 1720 |
| BfuAI | ACCTGC | 3 cut(s) | 219, 6158, 6518 |
| BfuI | GTATCC | 2 cut(s) | 3218, 5911 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 273 |
| BglII | AGATCT | 1 cut(s) | 6034 |
| BlnI | CCTAGG | 1 cut(s) | 4514 |
| BlpI | GCTNAGC | 2 cut(s) | 1965, 7198 |
| BmcAI | AGTACT | 1 cut(s) | 673 |
| BmeRI | GACNNNNNGTC | 4 cut(s) | 720, 2956, 3579, 4619 |
| BmeT110I | CYCGRG | 5 cut(s) | 1269, 1578, 2149, 7043, 7050 |
| BmgBI | CACGTC | 1 cut(s) | 1630 |
| BmrI | ACTGGG | 4 cut(s) | 3494, 7038, 7139, 7173 |
| BmuI | ACTGGG | 4 cut(s) | 3494, 7038, 7139, 7173 |
| BpiI | GAAGAC | 4 cut(s) | 1557, 4950, 5535, 5817 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2683, 2715 |
| BpmI | CTGGAG | 7 cut(s) | 486, 3765, 4447, 4851, 5226, 5979, 6579 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1227, 2776, 3899 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1965, 7198 |
| BpuEI | CTTGAG | 7 cut(s) | 1135, 1706, 2077, 3115, 4107, 5980, 6664 |
| BpuMI | CCSGG | 6 cut(s) | 12, 269, 825, 1579, 1580, 2594 |
| BsaAI | YACGTR | 1 cut(s) | 1546 |
| BsaBI | GATNNNNATC | 2 cut(s) | 5757, 7245 |
| BsaI | GGTCTC | 4 cut(s) | 909, 1371, 4513, 6248 |
| BsaWI | WCCGGW | 5 cut(s) | 114, 425, 1657, 2318, 6793 |
| Bse118I | RCCGGY | 2 cut(s) | 114, 2318 |
| Bse21I | CCTNAGG | 3 cut(s) | 1068, 3390, 3834 |
| Bse3DI | GCAATG | 6 cut(s) | 347, 483, 742, 3537, 6494, 6953 |
| Bse8I | GATNNNNATC | 2 cut(s) | 5757, 7245 |
| BseJI | GATNNNNATC | 2 cut(s) | 5757, 7245 |
| BseMI | GCAATG | 6 cut(s) | 347, 483, 742, 3537, 6494, 6953 |
| BseSI | GKGCMC | 1 cut(s) | 5487 |
| BseYI | CCCAGC | 4 cut(s) | 176, 2909, 3630, 3787 |
| BsgI | GTGCAG | 4 cut(s) | 2855, 3812, 6906, 7458 |
| Bsh1236I | CGCG | 5 cut(s) | 251, 882, 3591, 4995, 5633 |
| BshNI | GGYRCC | 5 cut(s) | 422, 5041, 5072, 5377, 6808 |
| BshTI | ACCGGT | 2 cut(s) | 114, 2318 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2388, 7199 |
| BsiHKCI | CYCGRG | 5 cut(s) | 1269, 1578, 2149, 7043, 7050 |
| BsmBI | CGTCTC | 2 cut(s) | 3771, 6462 |
| BsmI | GAATGC | 2 cut(s) | 3336, 5136 |
| Bso31I | GGTCTC | 4 cut(s) | 909, 1371, 4513, 6248 |
| BsoBI | CYCGRG | 5 cut(s) | 1269, 1578, 2149, 7043, 7050 |
| Bsp1286I | GDGCHC | 6 cut(s) | 257, 2388, 5408, 5487, 6385, 7199 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1965, 7198 |
| Bsp19I | CCATGG | 5 cut(s) | 919, 1306, 6717, 7003, 7414 |
| BspFNI | CGCG | 5 cut(s) | 251, 882, 3591, 4995, 5633 |
| BspHI | TCATGA | 1 cut(s) | 3007 |
| BspMAI | CTGCAG | 4 cut(s) | 564, 714, 5743, 6529 |
| BspMI | ACCTGC | 3 cut(s) | 219, 6158, 6518 |
| BspQI | GCTCTTC | 3 cut(s) | 1879, 1887, 3408 |
| BspT107I | GGYRCC | 5 cut(s) | 422, 5041, 5072, 5377, 6808 |
| BspTNI | GGTCTC | 4 cut(s) | 909, 1371, 4513, 6248 |
| BsrDI | GCAATG | 6 cut(s) | 347, 483, 742, 3537, 6494, 6953 |
| BsrFI | RCCGGY | 2 cut(s) | 114, 2318 |
| BssAI | RCCGGY | 2 cut(s) | 114, 2318 |
| BssNAI | GTATAC | 1 cut(s) | 3906 |
| BssSI | CACGAG | 2 cut(s) | 2700, 5496 |
| Bst1107I | GTATAC | 1 cut(s) | 3906 |
| Bst2BI | CACGAG | 2 cut(s) | 2700, 5496 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 4796 |
| BstBAI | YACGTR | 1 cut(s) | 1546 |
| BstDSI | CCRYGG | 7 cut(s) | 249, 919, 1306, 5045, 6717, 7003, 7414 |
| BstEII | GGTNACC | 3 cut(s) | 2314, 5394, 6816 |
| BstENI | CCTNNNNNAGG | 4 cut(s) | 2671, 2746, 6525, 6558 |
| BstFNI | CGCG | 5 cut(s) | 251, 882, 3591, 4995, 5633 |
| BstH2I | RGCGCY | 1 cut(s) | 1720 |
| BstHHI | GCGC | 5 cut(s) | 169, 702, 882, 1719, 5633 |
| BstNSI | RCATGY | 8 cut(s) | 700, 1349, 1961, 2065, 3862, 5539, 6787, 6889 |
| BstPI | GGTNACC | 3 cut(s) | 2314, 5394, 6816 |
| BstSFI | CTRYAG | 9 cut(s) | 560, 710, 2746, 3696, 5106, 5316, 5739, 6249, 6525 |
| BstSLI | GKGCMC | 1 cut(s) | 5487 |
| BstUI | CGCG | 5 cut(s) | 251, 882, 3591, 4995, 5633 |
| BstV2I | GAAGAC | 4 cut(s) | 1557, 4950, 5535, 5817 |
| BstX2I | RGATCY | 9 cut(s) | 1582, 1725, 2153, 4114, 5276, 6034, 6173, 6241, 7361 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 7004 |
| BstYI | RGATCY | 9 cut(s) | 1582, 1725, 2153, 4114, 5276, 6034, 6173, 6241, 7361 |
| BstZ17I | GTATAC | 1 cut(s) | 3906 |
| Bsu36I | CCTNAGG | 3 cut(s) | 1068, 3390, 3834 |
| BsuI | GTATCC | 2 cut(s) | 3218, 5911 |
| BtgI | CCRYGG | 7 cut(s) | 249, 919, 1306, 5045, 6717, 7003, 7414 |
| BtgZI | GCGATG | 1 cut(s) | 1431 |
| BtrI | CACGTC | 1 cut(s) | 1630 |
| BtsI | GCAGTG | 4 cut(s) | 169, 489, 1396, 7267 |
| BveI | ACCTGC | 3 cut(s) | 219, 6158, 6518 |
| CaiI | CAGNNNCTG | 4 cut(s) | 473, 1024, 3704, 5828 |
| CciI | TCATGA | 1 cut(s) | 3007 |
| CfoI | GCGC | 5 cut(s) | 169, 702, 882, 1719, 5633 |
| Cfr10I | RCCGGY | 2 cut(s) | 114, 2318 |
| Cfr42I | CCGCGG | 1 cut(s) | 252 |
| Cfr9I | CCCGGG | 1 cut(s) | 1578 |
| CpoI | CGGWCCG | 1 cut(s) | 827 |
| CseI | GACGC | 3 cut(s) | 1505, 5001, 6444 |
| CsiI | ACCWGGT | 2 cut(s) | 4404, 6568 |
| CspAI | ACCGGT | 2 cut(s) | 114, 2318 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 186, 221, 325, 360 |
| CspI | CGGWCCG | 1 cut(s) | 827 |
| DraI | TTTAAA | 1 cut(s) | 2172 |
| DraIII | CACNNNGTG | 2 cut(s) | 517, 7181 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 2087, 3691 |
| DriI | GACNNNNNGTC | 4 cut(s) | 720, 2956, 3579, 4619 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 2087, 3691 |
| EaeI | YGGCCR | 5 cut(s) | 58, 2858, 5260, 6275, 7333 |
| Eam1105I | GACNNNNNGTC | 4 cut(s) | 720, 2956, 3579, 4619 |
| EciI | GGCGGA | 2 cut(s) | 291, 6295 |
| Ecl136II | GAGCTC | 1 cut(s) | 7197 |
| Eco147I | AGGCCT | 2 cut(s) | 157, 304 |
| Eco24I | GRGCYC | 4 cut(s) | 257, 5408, 6385, 7199 |
| Eco31I | GGTCTC | 4 cut(s) | 909, 1371, 4513, 6248 |
| Eco32I | GATATC | 3 cut(s) | 4511, 5272, 6162 |
| Eco53kI | GAGCTC | 1 cut(s) | 7197 |
| Eco81I | CCTNAGG | 3 cut(s) | 1068, 3390, 3834 |
| Eco88I | CYCGRG | 5 cut(s) | 1269, 1578, 2149, 7043, 7050 |
| Eco91I | GGTNACC | 3 cut(s) | 2314, 5394, 6816 |
| EcoICRI | GAGCTC | 1 cut(s) | 7197 |
| EcoNI | CCTNNNNNAGG | 4 cut(s) | 2671, 2746, 6525, 6558 |
| EcoO65I | GGTNACC | 3 cut(s) | 2314, 5394, 6816 |
| EcoRI | GAATTC | 2 cut(s) | 3435, 5101 |
| EcoRV | GATATC | 3 cut(s) | 4511, 5272, 6162 |
| EcoT22I | ATGCAT | 1 cut(s) | 3261 |
| EcoT38I | GRGCYC | 4 cut(s) | 257, 5408, 6385, 7199 |
| Esp3I | CGTCTC | 2 cut(s) | 3771, 6462 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 351, 383, 1854, 1886 |
| FauI | CCCGC | 5 cut(s) | 244, 711, 4896, 6037, 7208 |
| FauNDI | CATATG | 1 cut(s) | 3465 |
| FbaI | TGATCA | 3 cut(s) | 373, 1168, 6181 |
| FblI | GTMKAC | 4 cut(s) | 3695, 3905, 4583, 6504 |
| FriOI | GRGCYC | 4 cut(s) | 257, 5408, 6385, 7199 |
| FspAI | RTGCGCAY | 1 cut(s) | 168 |
| FspI | TGCGCA | 1 cut(s) | 168 |
| GlaI | GCGC | 5 cut(s) | 168, 701, 881, 1718, 5632 |
| GsaI | CCCAGC | 4 cut(s) | 180, 2913, 3634, 3791 |
| GsuI | CTGGAG | 7 cut(s) | 486, 3765, 4447, 4851, 5226, 5979, 6579 |
| HaeII | RGCGCY | 1 cut(s) | 1720 |
| HgaI | GACGC | 3 cut(s) | 1505, 5001, 6444 |
| HhaI | GCGC | 5 cut(s) | 169, 702, 882, 1719, 5633 |
| Hin6I | GCGC | 5 cut(s) | 167, 700, 880, 1717, 5631 |
| HinP1I | GCGC | 5 cut(s) | 167, 700, 880, 1717, 5631 |
| HincII | GTYRAC | 4 cut(s) | 694, 1177, 6046, 7015 |
| HindII | GTYRAC | 4 cut(s) | 694, 1177, 6046, 7015 |
| HindIII | AAGCTT | 4 cut(s) | 185, 1746, 1973, 3737 |
| Hpy99I | CGWCG | 3 cut(s) | 1767, 4530, 4995 |
| HpyCH4IV | ACGT | 6 cut(s) | 1545, 1629, 2100, 4528, 4608, 5056 |
| HpySE526I | ACGT | 6 cut(s) | 1545, 1629, 2100, 4528, 4608, 5056 |
| HspAI | GCGC | 5 cut(s) | 167, 700, 880, 1717, 5631 |
| KflI | GGGWCCC | 1 cut(s) | 479 |
| KpnI | GGTACC | 2 cut(s) | 5076, 5381 |
| Ksp22I | TGATCA | 3 cut(s) | 373, 1168, 6181 |
| KspI | CCGCGG | 1 cut(s) | 252 |
| LguI | GCTCTTC | 3 cut(s) | 1879, 1887, 3408 |
| MabI | ACCWGGT | 2 cut(s) | 4404, 6568 |
| MaeII | ACGT | 6 cut(s) | 1545, 1629, 2100, 4528, 4608, 5056 |
| MfeI | CAATTG | 2 cut(s) | 4362, 5232 |
| MflI | RGATCY | 9 cut(s) | 1582, 1725, 2153, 4114, 5276, 6034, 6173, 6241, 7361 |
| MhlI | GDGCHC | 6 cut(s) | 257, 2388, 5408, 5487, 6385, 7199 |
| MlsI | TGGCCA | 4 cut(s) | 60, 5262, 6277, 7335 |
| MluI | ACGCGT | 1 cut(s) | 3589 |
| MluNI | TGGCCA | 4 cut(s) | 60, 5262, 6277, 7335 |
| Mox20I | TGGCCA | 4 cut(s) | 60, 5262, 6277, 7335 |
| Mph1103I | ATGCAT | 1 cut(s) | 3261 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1048, 4292, 7037 |
| MscI | TGGCCA | 4 cut(s) | 60, 5262, 6277, 7335 |
| MslI | CAYNNNNRTG | 8 cut(s) | 414, 1032, 2454, 3444, 3468, 4958, 6722, 6752 |
| Msp20I | TGGCCA | 4 cut(s) | 60, 5262, 6277, 7335 |
| MssI | GTTTAAAC | 1 cut(s) | 2172 |
| MunI | CAATTG | 2 cut(s) | 4362, 5232 |
| Mva1269I | GAATGC | 2 cut(s) | 3336, 5136 |
| MvnI | CGCG | 5 cut(s) | 251, 882, 3591, 4995, 5633 |
| NciI | CCSGG | 6 cut(s) | 12, 269, 825, 1579, 1580, 2594 |
| NcoI | CCATGG | 5 cut(s) | 919, 1306, 6717, 7003, 7414 |
| NdeI | CATATG | 1 cut(s) | 3465 |
| NmeAIII | GCCGAG | 3 cut(s) | 324, 993, 1379 |
| NsbI | TGCGCA | 1 cut(s) | 168 |
| NsiI | ATGCAT | 1 cut(s) | 3261 |
| NspI | RCATGY | 8 cut(s) | 700, 1349, 1961, 2065, 3862, 5539, 6787, 6889 |
| PaeR7I | CTCGAG | 2 cut(s) | 1269, 7050 |
| PagI | TCATGA | 1 cut(s) | 3007 |
| PaqCI | CACCTGC | 1 cut(s) | 6158 |
| PasI | CCCWGGG | 2 cut(s) | 3053, 3922 |
| PceI | AGGCCT | 2 cut(s) | 157, 304 |
| PciI | ACATGT | 3 cut(s) | 2061, 6783, 6885 |
| PciSI | GCTCTTC | 3 cut(s) | 1879, 1887, 3408 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 879, 5053 |
| PctI | GAATGC | 2 cut(s) | 3336, 5136 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1048, 4292, 7037 |
| PflFI | GACNNNGTC | 1 cut(s) | 1020 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 293, 4829, 6805 |
| PfoI | TCCNGGA | 3 cut(s) | 10, 3118, 3513 |
| PinAI | ACCGGT | 2 cut(s) | 114, 2318 |
| PmeI | GTTTAAAC | 1 cut(s) | 2172 |
| Ppu21I | YACGTR | 1 cut(s) | 1546 |
| PpuMI | RGGWCCY | 7 cut(s) | 479, 2178, 3423, 3728, 4649, 5292, 6477 |
| PscI | ACATGT | 3 cut(s) | 2061, 6783, 6885 |
| PsiI | TTATAA | 2 cut(s) | 6101, 6603 |
| Psp124BI | GAGCTC | 1 cut(s) | 7199 |
| Psp5II | RGGWCCY | 7 cut(s) | 479, 2178, 3423, 3728, 4649, 5292, 6477 |
| PspEI | GGTNACC | 3 cut(s) | 2314, 5394, 6816 |
| PspFI | CCCAGC | 4 cut(s) | 176, 2909, 3630, 3787 |
| PspPPI | RGGWCCY | 7 cut(s) | 479, 2178, 3423, 3728, 4649, 5292, 6477 |
| PstI | CTGCAG | 4 cut(s) | 564, 714, 5743, 6529 |
| PstNI | CAGNNNCTG | 4 cut(s) | 473, 1024, 3704, 5828 |
| PsuI | RGATCY | 9 cut(s) | 1582, 1725, 2153, 4114, 5276, 6034, 6173, 6241, 7361 |
| PsyI | GACNNNGTC | 1 cut(s) | 1020 |
| PvuII | CAGCTG | 7 cut(s) | 709, 3578, 5195, 5246, 5744, 5837, 5846 |
| RseI | CAYNNNNRTG | 8 cut(s) | 414, 1032, 2454, 3444, 3468, 4958, 6722, 6752 |
| Rsr2I | CGGWCCG | 1 cut(s) | 827 |
| RsrII | CGGWCCG | 1 cut(s) | 827 |
| SacI | GAGCTC | 1 cut(s) | 7199 |
| SacII | CCGCGG | 1 cut(s) | 252 |
| SapI | GCTCTTC | 3 cut(s) | 1879, 1887, 3408 |
| SbfI | CCTGCAGG | 1 cut(s) | 6529 |
| ScaI | AGTACT | 1 cut(s) | 673 |
| SdaI | CCTGCAGG | 1 cut(s) | 6529 |
| SduI | GDGCHC | 6 cut(s) | 257, 2388, 5408, 5487, 6385, 7199 |
| SexAI | ACCWGGT | 2 cut(s) | 4404, 6568 |
| SfcI | CTRYAG | 9 cut(s) | 560, 710, 2746, 3696, 5106, 5316, 5739, 6249, 6525 |
| Sfr274I | CTCGAG | 2 cut(s) | 1269, 7050 |
| Sfr303I | CCGCGG | 1 cut(s) | 252 |
| SgrBI | CCGCGG | 1 cut(s) | 252 |
| SlaI | CTCGAG | 2 cut(s) | 1269, 7050 |
| SmaI | CCCGGG | 1 cut(s) | 1580 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 414, 1032, 2454, 3444, 3468, 4958, 6722, 6752 |
| SmlI | CTYRAG | 9 cut(s) | 1150, 1269, 1685, 2092, 3130, 4122, 5995, 6643, 7050 |
| SmoI | CTYRAG | 9 cut(s) | 1150, 1269, 1685, 2092, 3130, 4122, 5995, 6643, 7050 |
| SpeI | ACTAGT | 1 cut(s) | 838 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 6529 |
| SseBI | AGGCCT | 2 cut(s) | 157, 304 |
| SspI | AATATT | 1 cut(s) | 3973 |
| SstI | GAGCTC | 1 cut(s) | 7199 |
| StuI | AGGCCT | 2 cut(s) | 157, 304 |
| TaiI | ACGT | 6 cut(s) | 1548, 1632, 2103, 4531, 4611, 5059 |
| TaqII | GACCGA | 2 cut(s) | 921, 5382 |
| TatI | WGTACW | 5 cut(s) | 671, 739, 1562, 3303, 3928 |
| TauI | GCSGC | 1 cut(s) | 2203 |
| TspGWI | ACGGA | 6 cut(s) | 819, 2540, 3737, 3753, 5062, 5174 |
| TspMI | CCCGGG | 1 cut(s) | 1578 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1020 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 293, 4829, 6805 |
| XagI | CCTNNNNNAGG | 4 cut(s) | 2671, 2746, 6525, 6558 |
| XceI | RCATGY | 8 cut(s) | 700, 1349, 1961, 2065, 3862, 5539, 6787, 6889 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 3511, 6112, 6270, 7025 |
| XhoI | CTCGAG | 2 cut(s) | 1269, 7050 |
| XmaI | CCCGGG | 1 cut(s) | 1578 |
| XmaJI | CCTAGG | 1 cut(s) | 4514 |
| XmiI | GTMKAC | 4 cut(s) | 3695, 3905, 4583, 6504 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1048, 4292, 7037 |
| ZrmI | AGTACT | 1 cut(s) | 673 |
| Zsp2I | ATGCAT | 1 cut(s) | 3261 |