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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G50370 AT3G50370 |
| fragaria_vesca | FvH4_5g28170 FvH4_5g28170 |
| malus_domestica | MD02G1171200.v1.1 MD15G1283100.v1.1 |
| prunus_persica | Prupe.7G134200_v2.0.a1 Prupe.7G134200_v2.0.a1 Prupe.7G134200_v2.0.a1 Prupe.7G134200_v2.0.a1 Prupe.7G134200_v2.0.a1 Prupe.7G134200_v2.0.a1 |
| pyrus_communis | pycom02g13790 pycom15g24620 |
| rosa_chinensis | RchiOBHm_Chr2g0105371 |
| rosa_laevigata | RLG00000017420 |
| rosa_multiflora | Rmu_sc0001407.1_g000023 |
| rosa_roxburghii | Rroxscaffold_2G00138260 |
| rosa_rugosa | Rorug02G0127800 Rorug02G0127900 Rorug02G0127900 Rorug02G0127900 |
| rosa_samantha | Rh2AG178600 Rh2BG187000 Rh2CG183100 Rh2DG184500 |
| rosa_wichuraiana | Rw2G014020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 6618 |
| AarI | CACCTGC | 1 cut(s) | 5966 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2108 |
| Acc16I | TGCGCA | 2 cut(s) | 177, 233 |
| Acc36I | ACCTGC | 2 cut(s) | 3503, 5966 |
| Acc65I | GGTACC | 2 cut(s) | 4423, 6671 |
| AccB1I | GGYRCC | 3 cut(s) | 4423, 6671, 6823 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 1172, 4844, 6820 |
| AccBSI | CCGCTC | 1 cut(s) | 6068 |
| AccI | GTMKAC | 3 cut(s) | 3929, 4598, 7155 |
| AccII | CGCG | 1 cut(s) | 5648 |
| AcoI | YGGCCR | 8 cut(s) | 258, 5275, 6083, 6290, 6729, 6861, 6920, 7360 |
| AdeI | CACNNNGTG | 1 cut(s) | 7196 |
| AflIII | ACRYGT | 1 cut(s) | 6900 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 747, 2977 |
| AhlI | ACTAGT | 1 cut(s) | 865 |
| AjiI | CACGTC | 3 cut(s) | 1651, 5009, 5183 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3007, 3039 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 5056, 5088 |
| Alw21I | GWGCWC | 6 cut(s) | 243, 1291, 2392, 2409, 6472, 7214 |
| Alw44I | GTGCAC | 1 cut(s) | 6468 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1732, 4496 |
| Ama87I | CYCGRG | 5 cut(s) | 1599, 5043, 7058, 7065, 7519 |
| ApaI | GGGCCC | 1 cut(s) | 621 |
| ApaLI | GTGCAC | 1 cut(s) | 6468 |
| Asp700I | GAANNNNTTC | 7 cut(s) | 1075, 3148, 3207, 4307, 5749, 6107, 7052 |
| Asp718I | GGTACC | 2 cut(s) | 4423, 6671 |
| AspLEI | GCGC | 7 cut(s) | 178, 234, 287, 729, 1740, 5648, 6786 |
| AsuC2I | CCSGG | 6 cut(s) | 12, 123, 852, 1600, 1601, 2615 |
| AsuNHI | GCTAGC | 1 cut(s) | 7238 |
| AvaI | CYCGRG | 5 cut(s) | 1599, 5043, 7058, 7065, 7519 |
| AxyI | CCTNAGG | 3 cut(s) | 1095, 3411, 3858 |
| BaeGI | GKGCMC | 3 cut(s) | 621, 5502, 6472 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 1420, 1453, 5187, 5220 |
| BalI | TGGCCA | 5 cut(s) | 5277, 6292, 6863, 6922, 7362 |
| BamHI | GGATCC | 3 cut(s) | 1603, 1746, 4129 |
| BanI | GGYRCC | 3 cut(s) | 4423, 6671, 6823 |
| BanII | GRGCYC | 5 cut(s) | 621, 2392, 2409, 6400, 7214 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 2833, 2865, 6982, 7014 |
| BauI | CACGAG | 2 cut(s) | 242, 2721 |
| BbsI | GAAGAC | 3 cut(s) | 1578, 4965, 5832 |
| Bbv12I | GWGCWC | 6 cut(s) | 243, 1291, 2392, 2409, 6472, 7214 |
| BbvCI | CCTCAGC | 3 cut(s) | 2170, 2797, 3923 |
| BceAI | ACGGC | 4 cut(s) | 118, 2722, 5667, 6098 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 276, 310, 1206, 1240, 6952, 6986 |
| BciVI | GTATCC | 2 cut(s) | 3736, 5926 |
| BclI | TGATCA | 4 cut(s) | 385, 1183, 6196, 7255 |
| BcnI | CCSGG | 6 cut(s) | 12, 123, 852, 1600, 1601, 2615 |
| BcuI | ACTAGT | 1 cut(s) | 865 |
| BfoI | RGCGCY | 1 cut(s) | 1741 |
| BfuAI | ACCTGC | 2 cut(s) | 3503, 5966 |
| BfuI | GTATCC | 2 cut(s) | 3736, 5926 |
| BglII | AGATCT | 1 cut(s) | 6049 |
| BlpI | GCTNAGC | 2 cut(s) | 1986, 7213 |
| BmcAI | AGTACT | 2 cut(s) | 700, 3954 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 747, 2977 |
| BmeT110I | CYCGRG | 5 cut(s) | 1599, 5043, 7058, 7065, 7519 |
| BmgBI | CACGTC | 3 cut(s) | 1651, 5009, 5183 |
| BmrI | ACTGGG | 6 cut(s) | 312, 2140, 2940, 7053, 7154, 7188 |
| BmtI | GCTAGC | 1 cut(s) | 7242 |
| BmuI | ACTGGG | 6 cut(s) | 312, 2140, 2940, 7053, 7154, 7188 |
| BoxI | GACNNNNGTC | 2 cut(s) | 2340, 4379 |
| BpiI | GAAGAC | 3 cut(s) | 1578, 4965, 5832 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 2704, 2736, 4522, 4554 |
| BpmI | CTGGAG | 8 cut(s) | 162, 516, 1754, 3789, 4866, 5241, 5725, 6594 |
| Bpu10I | CCTNAGC | 5 cut(s) | 1815, 2170, 2797, 3923, 4497 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1986, 7213 |
| BpuEI | CTTGAG | 6 cut(s) | 1275, 1727, 2098, 4122, 4462, 6679 |
| BpuMI | CCSGG | 6 cut(s) | 12, 123, 852, 1600, 1601, 2615 |
| Bsa29I | ATCGAT | 1 cut(s) | 3974 |
| BsaAI | YACGTR | 1 cut(s) | 4510 |
| BsaBI | GATNNNNATC | 4 cut(s) | 2526, 2874, 7254, 7260 |
| BsaI | GGTCTC | 5 cut(s) | 936, 1392, 4528, 5053, 6263 |
| BsaWI | WCCGGW | 1 cut(s) | 4420 |
| Bse118I | RCCGGY | 4 cut(s) | 260, 277, 443, 6542 |
| Bse21I | CCTNAGG | 3 cut(s) | 1095, 3411, 3858 |
| Bse3DI | GCAATG | 5 cut(s) | 359, 769, 3558, 6509, 6968 |
| Bse8I | GATNNNNATC | 4 cut(s) | 2526, 2874, 7254, 7260 |
| BseCI | ATCGAT | 1 cut(s) | 3974 |
| BseJI | GATNNNNATC | 4 cut(s) | 2526, 2874, 7254, 7260 |
| BseMI | GCAATG | 5 cut(s) | 359, 769, 3558, 6509, 6968 |
| BseSI | GKGCMC | 3 cut(s) | 621, 5502, 6472 |
| BseX3I | CGGCCG | 1 cut(s) | 258 |
| BseYI | CCCAGC | 3 cut(s) | 185, 3654, 3811 |
| BsgI | GTGCAG | 4 cut(s) | 3531, 3836, 6921, 7485 |
| Bsh1236I | CGCG | 1 cut(s) | 5648 |
| Bsh1285I | CGRYCG | 1 cut(s) | 261 |
| BshNI | GGYRCC | 3 cut(s) | 4423, 6671, 6823 |
| BshVI | ATCGAT | 1 cut(s) | 3974 |
| BsiEI | CGRYCG | 1 cut(s) | 261 |
| BsiHKAI | GWGCWC | 6 cut(s) | 243, 1291, 2392, 2409, 6472, 7214 |
| BsiHKCI | CYCGRG | 5 cut(s) | 1599, 5043, 7058, 7065, 7519 |
| BsmBI | CGTCTC | 2 cut(s) | 1036, 7348 |
| BsmI | GAATGC | 1 cut(s) | 3357 |
| Bso31I | GGTCTC | 5 cut(s) | 936, 1392, 4528, 5053, 6263 |
| BsoBI | CYCGRG | 5 cut(s) | 1599, 5043, 7058, 7065, 7519 |
| Bsp120I | GGGCCC | 1 cut(s) | 617 |
| Bsp1286I | GDGCHC | 9 cut(s) | 243, 621, 1291, 2392, 2409, 5502, 6400, 6472, 7214 |
| Bsp1407I | TGTACA | 1 cut(s) | 2893 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1986, 7213 |
| Bsp19I | CCATGG | 6 cut(s) | 427, 946, 3946, 6732, 7018, 7441 |
| BspDI | ATCGAT | 1 cut(s) | 3974 |
| BspFNI | CGCG | 1 cut(s) | 5648 |
| BspHI | TCATGA | 2 cut(s) | 3028, 7541 |
| BspMAI | CTGCAG | 4 cut(s) | 594, 5758, 5977, 6049 |
| BspMI | ACCTGC | 2 cut(s) | 3503, 5966 |
| BspOI | GCTAGC | 1 cut(s) | 7242 |
| BspQI | GCTCTTC | 2 cut(s) | 1900, 1908 |
| BspT107I | GGYRCC | 3 cut(s) | 4423, 6671, 6823 |
| BspTNI | GGTCTC | 5 cut(s) | 936, 1392, 4528, 5053, 6263 |
| BsrBI | CCGCTC | 1 cut(s) | 6068 |
| BsrDI | GCAATG | 5 cut(s) | 359, 769, 3558, 6509, 6968 |
| BsrFI | RCCGGY | 4 cut(s) | 260, 277, 443, 6542 |
| BsrGI | TGTACA | 1 cut(s) | 2893 |
| BssAI | RCCGGY | 4 cut(s) | 260, 277, 443, 6542 |
| BssNAI | GTATAC | 1 cut(s) | 3930 |
| BssSI | CACGAG | 2 cut(s) | 242, 2721 |
| Bst1107I | GTATAC | 1 cut(s) | 3930 |
| Bst2BI | CACGAG | 2 cut(s) | 242, 2721 |
| BstAUI | TGTACA | 1 cut(s) | 2893 |
| BstBAI | YACGTR | 1 cut(s) | 4510 |
| BstDSI | CCRYGG | 6 cut(s) | 427, 946, 3946, 6732, 7018, 7441 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 2692, 6573 |
| BstFNI | CGCG | 1 cut(s) | 5648 |
| BstH2I | RGCGCY | 1 cut(s) | 1741 |
| BstHHI | GCGC | 7 cut(s) | 178, 234, 287, 729, 1740, 5648, 6786 |
| BstMCI | CGRYCG | 1 cut(s) | 261 |
| BstNSI | RCATGY | 7 cut(s) | 727, 1370, 1982, 3886, 5554, 6802, 6904 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 2340, 4379 |
| BstSLI | GKGCMC | 3 cut(s) | 621, 5502, 6472 |
| BstUI | CGCG | 1 cut(s) | 5648 |
| BstV2I | GAAGAC | 3 cut(s) | 1578, 4965, 5832 |
| BstX2I | RGATCY | 8 cut(s) | 1603, 1746, 4129, 5291, 6049, 6188, 6256, 7388 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 7019 |
| BstYI | RGATCY | 8 cut(s) | 1603, 1746, 4129, 5291, 6049, 6188, 6256, 7388 |
| BstZ17I | GTATAC | 1 cut(s) | 3930 |
| BstZI | CGGCCG | 1 cut(s) | 258 |
| Bsu15I | ATCGAT | 1 cut(s) | 3974 |
| Bsu36I | CCTNAGG | 3 cut(s) | 1095, 3411, 3858 |
| BsuI | GTATCC | 2 cut(s) | 3736, 5926 |
| BsuTUI | ATCGAT | 1 cut(s) | 3974 |
| BtgI | CCRYGG | 6 cut(s) | 427, 946, 3946, 6732, 7018, 7441 |
| BtrI | CACGTC | 3 cut(s) | 1651, 5009, 5183 |
| BtsI | GCAGTG | 5 cut(s) | 178, 345, 475, 1417, 7282 |
| BveI | ACCTGC | 2 cut(s) | 3503, 5966 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1732, 4496 |
| CciI | TCATGA | 2 cut(s) | 3028, 7541 |
| CfoI | GCGC | 7 cut(s) | 178, 234, 287, 729, 1740, 5648, 6786 |
| Cfr10I | RCCGGY | 4 cut(s) | 260, 277, 443, 6542 |
| Cfr9I | CCCGGG | 1 cut(s) | 1599 |
| ClaI | ATCGAT | 1 cut(s) | 3974 |
| CseI | GACGC | 1 cut(s) | 1526 |
| CsiI | ACCWGGT | 2 cut(s) | 4426, 6583 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 195, 230 |
| DraI | TTTAAA | 2 cut(s) | 2193, 5082 |
| DraIII | CACNNNGTG | 1 cut(s) | 7196 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2108 |
| DriI | GACNNNNNGTC | 2 cut(s) | 747, 2977 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2108 |
| EaeI | YGGCCR | 8 cut(s) | 258, 5275, 6083, 6290, 6729, 6861, 6920, 7360 |
| EagI | CGGCCG | 1 cut(s) | 258 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 747, 2977 |
| EciI | GGCGGA | 2 cut(s) | 72, 2274 |
| Ecl136II | GAGCTC | 3 cut(s) | 2390, 2407, 7212 |
| EclXI | CGGCCG | 1 cut(s) | 258 |
| Eco147I | AGGCCT | 2 cut(s) | 166, 313 |
| Eco24I | GRGCYC | 5 cut(s) | 621, 2392, 2409, 6400, 7214 |
| Eco31I | GGTCTC | 5 cut(s) | 936, 1392, 4528, 5053, 6263 |
| Eco32I | GATATC | 3 cut(s) | 4526, 5287, 6177 |
| Eco52I | CGGCCG | 1 cut(s) | 258 |
| Eco53kI | GAGCTC | 3 cut(s) | 2390, 2407, 7212 |
| Eco81I | CCTNAGG | 3 cut(s) | 1095, 3411, 3858 |
| Eco88I | CYCGRG | 5 cut(s) | 1599, 5043, 7058, 7065, 7519 |
| EcoICRI | GAGCTC | 3 cut(s) | 2390, 2407, 7212 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 2692, 6573 |
| EcoRI | GAATTC | 3 cut(s) | 3456, 5116, 6073 |
| EcoRV | GATATC | 3 cut(s) | 4526, 5287, 6177 |
| EcoT22I | ATGCAT | 1 cut(s) | 3282 |
| EcoT38I | GRGCYC | 5 cut(s) | 621, 2392, 2409, 6400, 7214 |
| Esp3I | CGTCTC | 2 cut(s) | 1036, 7348 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1875, 1907 |
| FauI | CCCGC | 5 cut(s) | 119, 316, 628, 738, 4911 |
| FauNDI | CATATG | 2 cut(s) | 3486, 4414 |
| FbaI | TGATCA | 4 cut(s) | 385, 1183, 6196, 7255 |
| FblI | GTMKAC | 3 cut(s) | 3929, 4598, 7155 |
| FriOI | GRGCYC | 5 cut(s) | 621, 2392, 2409, 6400, 7214 |
| FspAI | RTGCGCAY | 1 cut(s) | 177 |
| FspI | TGCGCA | 2 cut(s) | 177, 233 |
| GlaI | GCGC | 7 cut(s) | 177, 233, 286, 728, 1739, 5647, 6785 |
| GsaI | CCCAGC | 3 cut(s) | 189, 3658, 3815 |
| GsuI | CTGGAG | 8 cut(s) | 162, 516, 1754, 3789, 4866, 5241, 5725, 6594 |
| HaeII | RGCGCY | 1 cut(s) | 1741 |
| HgaI | GACGC | 1 cut(s) | 1526 |
| HhaI | GCGC | 7 cut(s) | 178, 234, 287, 729, 1740, 5648, 6786 |
| Hin6I | GCGC | 7 cut(s) | 176, 232, 285, 727, 1738, 5646, 6784 |
| HinP1I | GCGC | 7 cut(s) | 176, 232, 285, 727, 1738, 5646, 6784 |
| HincII | GTYRAC | 3 cut(s) | 721, 6061, 7030 |
| HindII | GTYRAC | 3 cut(s) | 721, 6061, 7030 |
| HindIII | AAGCTT | 5 cut(s) | 194, 966, 1767, 1994, 3761 |
| Hpy99I | CGWCG | 3 cut(s) | 795, 4545, 5010 |
| HspAI | GCGC | 7 cut(s) | 176, 232, 285, 727, 1738, 5646, 6784 |
| KpnI | GGTACC | 2 cut(s) | 4427, 6675 |
| KroI | GCCGGC | 1 cut(s) | 277 |
| KroNI | GCCGGC | 1 cut(s) | 279 |
| Ksp22I | TGATCA | 4 cut(s) | 385, 1183, 6196, 7255 |
| LguI | GCTCTTC | 2 cut(s) | 1900, 1908 |
| MabI | ACCWGGT | 2 cut(s) | 4426, 6583 |
| MbiI | CCGCTC | 1 cut(s) | 6068 |
| MfeI | CAATTG | 3 cut(s) | 734, 5247, 6486 |
| MflI | RGATCY | 8 cut(s) | 1603, 1746, 4129, 5291, 6049, 6188, 6256, 7388 |
| MhlI | GDGCHC | 9 cut(s) | 243, 621, 1291, 2392, 2409, 5502, 6400, 6472, 7214 |
| MlsI | TGGCCA | 5 cut(s) | 5277, 6292, 6863, 6922, 7362 |
| MluNI | TGGCCA | 5 cut(s) | 5277, 6292, 6863, 6922, 7362 |
| Mox20I | TGGCCA | 5 cut(s) | 5277, 6292, 6863, 6922, 7362 |
| Mph1103I | ATGCAT | 1 cut(s) | 3282 |
| MroNI | GCCGGC | 1 cut(s) | 277 |
| MroXI | GAANNNNTTC | 7 cut(s) | 1075, 3148, 3207, 4307, 5749, 6107, 7052 |
| MscI | TGGCCA | 5 cut(s) | 5277, 6292, 6863, 6922, 7362 |
| MslI | CAYNNNNRTG | 9 cut(s) | 432, 2475, 3465, 3489, 3624, 4973, 6737, 6767, 7017 |
| Msp20I | TGGCCA | 5 cut(s) | 5277, 6292, 6863, 6922, 7362 |
| MssI | GTTTAAAC | 1 cut(s) | 2193 |
| MunI | CAATTG | 3 cut(s) | 734, 5247, 6486 |
| Mva1269I | GAATGC | 1 cut(s) | 3357 |
| MvnI | CGCG | 1 cut(s) | 5648 |
| NaeI | GCCGGC | 1 cut(s) | 279 |
| NciI | CCSGG | 6 cut(s) | 12, 123, 852, 1600, 1601, 2615 |
| NcoI | CCATGG | 6 cut(s) | 427, 946, 3946, 6732, 7018, 7441 |
| NdeI | CATATG | 2 cut(s) | 3486, 4414 |
| NgoMIV | GCCGGC | 1 cut(s) | 277 |
| NheI | GCTAGC | 1 cut(s) | 7238 |
| NmeAIII | GCCGAG | 2 cut(s) | 472, 1400 |
| NsbI | TGCGCA | 2 cut(s) | 177, 233 |
| NsiI | ATGCAT | 1 cut(s) | 3282 |
| NspI | RCATGY | 7 cut(s) | 727, 1370, 1982, 3886, 5554, 6802, 6904 |
| PaeI | GCATGC | 1 cut(s) | 1982 |
| PaeR7I | CTCGAG | 1 cut(s) | 7065 |
| PagI | TCATGA | 2 cut(s) | 3028, 7541 |
| PaqCI | CACCTGC | 1 cut(s) | 5966 |
| PceI | AGGCCT | 2 cut(s) | 166, 313 |
| PciI | ACATGT | 1 cut(s) | 6900 |
| PciSI | GCTCTTC | 2 cut(s) | 1900, 1908 |
| PctI | GAATGC | 1 cut(s) | 3357 |
| PdiI | GCCGGC | 1 cut(s) | 279 |
| PdmI | GAANNNNTTC | 7 cut(s) | 1075, 3148, 3207, 4307, 5749, 6107, 7052 |
| PflFI | GACNNNGTC | 2 cut(s) | 304, 1047 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 1172, 4844, 6820 |
| PfoI | TCCNGGA | 4 cut(s) | 10, 3139, 3534, 4027 |
| PmeI | GTTTAAAC | 1 cut(s) | 2193 |
| Ppu21I | YACGTR | 1 cut(s) | 4510 |
| PpuMI | RGGWCCY | 8 cut(s) | 2199, 3444, 3752, 4034, 4664, 5307, 5392, 6492 |
| PscI | ACATGT | 1 cut(s) | 6900 |
| PshAI | GACNNNNGTC | 2 cut(s) | 2340, 4379 |
| PsiI | TTATAA | 1 cut(s) | 6618 |
| Psp124BI | GAGCTC | 3 cut(s) | 2392, 2409, 7214 |
| Psp5II | RGGWCCY | 8 cut(s) | 2199, 3444, 3752, 4034, 4664, 5307, 5392, 6492 |
| PspFI | CCCAGC | 3 cut(s) | 185, 3654, 3811 |
| PspOMI | GGGCCC | 1 cut(s) | 617 |
| PspPPI | RGGWCCY | 8 cut(s) | 2199, 3444, 3752, 4034, 4664, 5307, 5392, 6492 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3717, 3749 |
| PstI | CTGCAG | 4 cut(s) | 594, 5758, 5977, 6049 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1732, 4496 |
| PsuI | RGATCY | 8 cut(s) | 1603, 1746, 4129, 5291, 6049, 6188, 6256, 7388 |
| PsyI | GACNNNGTC | 2 cut(s) | 304, 1047 |
| PvuII | CAGCTG | 7 cut(s) | 3599, 3922, 5210, 5261, 5759, 5852, 5861 |
| RseI | CAYNNNNRTG | 9 cut(s) | 432, 2475, 3465, 3489, 3624, 4973, 6737, 6767, 7017 |
| SacI | GAGCTC | 3 cut(s) | 2392, 2409, 7214 |
| SapI | GCTCTTC | 2 cut(s) | 1900, 1908 |
| ScaI | AGTACT | 2 cut(s) | 700, 3954 |
| SduI | GDGCHC | 9 cut(s) | 243, 621, 1291, 2392, 2409, 5502, 6400, 6472, 7214 |
| SexAI | ACCWGGT | 2 cut(s) | 4426, 6583 |
| Sfr274I | CTCGAG | 1 cut(s) | 7065 |
| SlaI | CTCGAG | 1 cut(s) | 7065 |
| SmaI | CCCGGG | 1 cut(s) | 1601 |
| SmiMI | CAYNNNNRTG | 9 cut(s) | 432, 2475, 3465, 3489, 3624, 4973, 6737, 6767, 7017 |
| SmlI | CTYRAG | 7 cut(s) | 1290, 1706, 2113, 4137, 4477, 6658, 7065 |
| SmoI | CTYRAG | 7 cut(s) | 1290, 1706, 2113, 4137, 4477, 6658, 7065 |
| SpeI | ACTAGT | 1 cut(s) | 865 |
| SphI | GCATGC | 1 cut(s) | 1982 |
| SseBI | AGGCCT | 2 cut(s) | 166, 313 |
| SstI | GAGCTC | 3 cut(s) | 2392, 2409, 7214 |
| StuI | AGGCCT | 2 cut(s) | 166, 313 |
| TaqII | GACCGA | 4 cut(s) | 102, 526, 948, 5712 |
| TatI | WGTACW | 5 cut(s) | 698, 766, 2893, 3395, 3952 |
| TauI | GCSGC | 1 cut(s) | 88 |
| TspGWI | ACGGA | 6 cut(s) | 844, 1960, 3761, 3990, 5397, 7262 |
| TspMI | CCCGGG | 1 cut(s) | 1599 |
| Tth111I | GACNNNGTC | 2 cut(s) | 304, 1047 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 1172, 4844, 6820 |
| VneI | GTGCAC | 1 cut(s) | 6468 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 2692, 6573 |
| XceI | RCATGY | 7 cut(s) | 727, 1370, 1982, 3886, 5554, 6802, 6904 |
| XcmI | CCANNNNNNNNNTGG | 7 cut(s) | 145, 434, 6127, 6285, 6492, 6817, 7040 |
| XhoI | CTCGAG | 1 cut(s) | 7065 |
| XmaI | CCCGGG | 1 cut(s) | 1599 |
| XmiI | GTMKAC | 3 cut(s) | 3929, 4598, 7155 |
| XmnI | GAANNNNTTC | 7 cut(s) | 1075, 3148, 3207, 4307, 5749, 6107, 7052 |
| ZrmI | AGTACT | 2 cut(s) | 700, 3954 |
| Zsp2I | ATGCAT | 1 cut(s) | 3282 |