Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013962

Physical Location & Seq

Genomic Coordinates Forward (+)

18709613 .. 18710836

Gene Structure 1224 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G50410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGCCGACGTCTGACTCCGGTGAACCACGGCGAATAGCTATGAAACCTAACGGCGTAACAGTTCCGATTTCTGACCAGCAAGAACAGCTTCCATGTCCTCGTTGTGACTCATCCAACACTAAGTTCTGTTACTACAACAACTACAACTTCTCTCAGCCTCGTCACTTCTGCAAAGCTTGTCGTCGTTACTGGACTCACGGTGGTACTCTCCGTGACGTTCCTGTCGGTGGTGGTACTCGTAAAAGCGCGAAACGTTCCCGCACTTGCTCGAACTCTTCTTCCTCCTCTGTTTCTGGTGTCGTCTCTAACTCTAACGGTGTTCCGTTACAAACGACGCCTGTTCTCTTCCCTCAGTCGTCAATCTCTAACGGCGTTACTCACACAGTAACTGAAAGCGACGGAAAGGGAAGTGCTTTATCTCTCTGTGGAAGTTTCACCTCCACTCTGTTGAACCATAACGCTGCTGCGACGGCTACGCATGGATCCGGTTCGGTTATTGGTATCGGAGGTTTTGGAATCGGACTCGGGTCGGGTTTTGATGACGTCAGCTTTGGACTCGGAAGAGCGATGTGGCCGTTTTCAACTGTTGGTACTGCGACAACGACGAATGTTGGGAGTAACGGTGGTCATCACGCTGTTCCAATGCCAGCCACGTGGCAGTTCGAGGGTTTAGAGAGCAACGCTGGTGGTGGATTTGTCTCCGGTGAGTACTTTGCGTGGCCGGATCTTTCCATCACAACTCCGGGAAACTCACTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0042545 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0045787 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051726 GO:0060255 GO:0065007 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

253

Amino Acids

26.38

Weight (kDa)

8.72

Isoelectric Point (pI)

40.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	28 - 84	1.1e-33	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50410 AT5G66940
fragaria_vesca	FvH4_1g14790
malus_domestica	MD02G1161200.v1.1 MD15G1275300.v1.1
prunus_persica	Prupe.7G142500_v2.0.a1
pyrus_communis	pycom02g12720 pycom15g23830
rosa_chinensis	RchiOBHm_Chr2g0103751
rosa_laevigata	RLG00000017255
rosa_multiflora	Rmu_sc0001852.1_g000001
rosa_rugosa	Rorug02G0117100
rosa_samantha	Rh2AG166000 Rh2BG173300 Rh2CG172000 Rh2DG171500
rosa_wichuraiana	Rw2G013000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	221
AatII	GACGTC	2 cut(s)	11, 546
AccII	CGCG	1 cut(s)	248
AciI	CCGC	1 cut(s)	259
AclI	AACGTT	1 cut(s)	253
AclWI	GGATC	3 cut(s)	477, 490, 732
AcoI	YGGCCR	2 cut(s)	572, 719
AcvI	CACGTG	1 cut(s)	654
AcyI	GRCGYC	3 cut(s)	8, 335, 543
AfaI	GTAC	4 cut(s)	205, 235, 592, 710
AfiI	CCNNNNNNNGG	1 cut(s)	227
AgsI	TTSAA	2 cut(s)	451, 582
AjuI	GAANNNNNNNTTGG	2 cut(s)	107, 139
AloI	GAACNNNNNNTCC	2 cut(s)	263, 295
AluBI	AGCT	4 cut(s)	38, 88, 176, 549
AluI	AGCT	4 cut(s)	38, 88, 176, 549
Alw26I	GTCTC	2 cut(s)	307, 703
AlwI	GGATC	3 cut(s)	477, 490, 732
AlwNI	CAGNNNCTG	1 cut(s)	389
Ama87I	CYCGRG	1 cut(s)	524
AoxI	GGCC	2 cut(s)	572, 719
ApeKI	GCWGC	2 cut(s)	461, 464
ArsI	GACNNNNNNTTYG	2 cut(s)	533, 565
Asp700I	GAANNNNTTC	1 cut(s)	87
AspLEI	GCGC	1 cut(s)	248
AsuC2I	CCSGG	1 cut(s)	744
AsuHPI	GGTGA	3 cut(s)	32, 427, 716
AvaI	CYCGRG	1 cut(s)	524
BamHI	GGATCC	1 cut(s)	482
BbrPI	CACGTG	1 cut(s)	654
BbvI	GCAGC	2 cut(s)	448, 451
BccI	CCATC	1 cut(s)	740
BceAI	ACGGC	5 cut(s)	44, 67, 385, 486, 559
BcnI	CCSGG	1 cut(s)	744
BcoDI	GTCTC	2 cut(s)	307, 703
BisI	GCNGC	2 cut(s)	462, 465
BlsI	GCNGC	2 cut(s)	463, 466
BmcAI	AGTACT	1 cut(s)	710
Bme1390I	CCNGG	1 cut(s)	744
BmeT110I	CYCGRG	1 cut(s)	524
BmiI	GGNNCC	1 cut(s)	484
BmrFI	CCNGG	1 cut(s)	744
BoxI	GACNNNNGTC	1 cut(s)	526
BpuMI	CCSGG	1 cut(s)	744
BsaAI	YACGTR	1 cut(s)	654
BsaHI	GRCGYC	3 cut(s)	8, 335, 543
BsaJI	CCNNGG	1 cut(s)	26
BsaWI	WCCGGW	3 cut(s)	17, 485, 701
BsaXI	ACNNNNNCTCC	2 cut(s)	607, 637
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
Bse1I	ACTGG	1 cut(s)	194
BseDI	CCNNGG	1 cut(s)	26
BseGI	GGATG	1 cut(s)	110
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseMII	CTCAG	2 cut(s)	167, 365
BseNI	ACTGG	1 cut(s)	194
BseRI	GAGGAG	1 cut(s)	274
BseXI	GCAGC	2 cut(s)	448, 451
Bsh1236I	CGCG	1 cut(s)	248
BshFI	GGCC	2 cut(s)	574, 721
BsiHKCI	CYCGRG	1 cut(s)	524
BsiSI	CCGG	5 cut(s)	18, 486, 702, 722, 743
BslI	CCNNNNNNNGG	1 cut(s)	227
BsmAI	GTCTC	2 cut(s)	307, 703
BsmBI	CGTCTC	1 cut(s)	307
BsnI	GGCC	2 cut(s)	574, 721
BsoBI	CYCGRG	1 cut(s)	524
Bsp143I	GATC	2 cut(s)	482, 724
BspACI	CCGC	1 cut(s)	259
BspANI	GGCC	2 cut(s)	574, 721
BspCNI	CTCAG	2 cut(s)	166, 364
BspFNI	CGCG	1 cut(s)	248
BspLI	GGNNCC	1 cut(s)	484
BspPI	GGATC	3 cut(s)	477, 490, 732
BspQI	GCTCTTC	1 cut(s)	556
BsrI	ACTGG	1 cut(s)	194
BssECI	CCNNGG	1 cut(s)	26
BssMI	GATC	2 cut(s)	482, 724
BssNI	GRCGYC	3 cut(s)	8, 335, 543
Bst4CI	ACNGT	6 cut(s)	61, 200, 317, 385, 586, 623
Bst6I	CTCTTC	3 cut(s)	280, 350, 556
BstACI	GRCGYC	3 cut(s)	8, 335, 543
BstBAI	YACGTR	1 cut(s)	654
BstC8I	GCNNGC	1 cut(s)	648
BstDEI	CTNAG	3 cut(s)	120, 153, 351
BstDSI	CCRYGG	1 cut(s)	26
BstF5I	GGATG	1 cut(s)	110
BstFNI	CGCG	1 cut(s)	248
BstHHI	GCGC	1 cut(s)	248
BstKTI	GATC	2 cut(s)	485, 727
BstMAI	GTCTC	2 cut(s)	307, 703
BstMBI	GATC	2 cut(s)	482, 724
BstMWI	GCNNNNNNNGC	2 cut(s)	85, 470
BstPAI	GACNNNNGTC	1 cut(s)	526
BstSCI	CCNGG	1 cut(s)	742
BstUI	CGCG	1 cut(s)	248
BstV1I	GCAGC	2 cut(s)	448, 451
BstX2I	RGATCY	2 cut(s)	482, 724
BstXI	CCANNNNNNTGG	1 cut(s)	654
BstYI	RGATCY	2 cut(s)	482, 724
BsuRI	GGCC	2 cut(s)	574, 721
BtgI	CCRYGG	1 cut(s)	26
BtgZI	GCGATG	1 cut(s)	581
BtsCI	GGATG	1 cut(s)	110
Cac8I	GCNNGC	1 cut(s)	648
CaiI	CAGNNNCTG	1 cut(s)	389
CfoI	GCGC	1 cut(s)	248
CseI	GACGC	1 cut(s)	343
Csp6I	GTAC	4 cut(s)	204, 234, 591, 709
CspCI	CAANNNNNGTGG	2 cut(s)	667, 702
CviAII	CATG	2 cut(s)	93, 479
CviJI	RGCY	9 cut(s)	38, 88, 157, 176, 473, 549, 574, 650, 721
CviKI_1	RGCY	9 cut(s)	38, 88, 157, 176, 473, 549, 574, 650, 721
CviQI	GTAC	4 cut(s)	204, 234, 591, 709
DdeI	CTNAG	3 cut(s)	120, 153, 351
DpnI	GATC	2 cut(s)	484, 726
DpnII	GATC	2 cut(s)	482, 724
DrdI	GACNNNNNNGTC	1 cut(s)	221
DseDI	GACNNNNNNGTC	1 cut(s)	221
EaeI	YGGCCR	2 cut(s)	572, 719
Eam1104I	CTCTTC	3 cut(s)	280, 350, 556
EarI	CTCTTC	3 cut(s)	280, 350, 556
Eco72I	CACGTG	1 cut(s)	654
Eco88I	CYCGRG	1 cut(s)	524
Esp3I	CGTCTC	1 cut(s)	307
FaeI	CATG	2 cut(s)	96, 482
FaiI	YATR	4 cut(s)	41, 94, 456, 480
FalI	AAGNNNNNCTT	2 cut(s)	72, 104
FatI	CATG	2 cut(s)	92, 478
FauI	CCCGC	1 cut(s)	266
Fnu4HI	GCNGC	2 cut(s)	462, 465
FokI	GGATG	1 cut(s)	97
Fsp4HI	GCNGC	2 cut(s)	462, 465
GlaI	GCGC	1 cut(s)	247
GluI	GCNGC	2 cut(s)	462, 465
HaeIII	GGCC	2 cut(s)	574, 721
HapII	CCGG	5 cut(s)	18, 486, 702, 722, 743
HgaI	GACGC	1 cut(s)	343
HhaI	GCGC	1 cut(s)	248
Hin1I	GRCGYC	3 cut(s)	8, 335, 543
Hin1II	CATG	2 cut(s)	96, 482
Hin6I	GCGC	1 cut(s)	246
HinP1I	GCGC	1 cut(s)	246
HindIII	AAGCTT	1 cut(s)	174
HinfI	GANTC	6 cut(s)	14, 107, 193, 516, 522, 555
HpaII	CCGG	5 cut(s)	18, 486, 702, 722, 743
HphI	GGTGA	3 cut(s)	32, 427, 716
Hpy166II	GTNNAC	1 cut(s)	23
Hpy188I	TCNGA	6 cut(s)	13, 66, 73, 506, 521, 560
Hpy8I	GTNNAC	1 cut(s)	23
Hpy99I	CGWCG	6 cut(s)	10, 186, 337, 401, 472, 607
HpyCH4III	ACNGT	6 cut(s)	61, 200, 317, 385, 586, 623
HpyCH4IV	ACGT	5 cut(s)	8, 216, 253, 543, 653
HpyCH4V	TGCA	1 cut(s)	171
HpyF10VI	GCNNNNNNNGC	2 cut(s)	85, 470
HpyF3I	CTNAG	3 cut(s)	120, 153, 351
HpySE526I	ACGT	5 cut(s)	8, 216, 253, 543, 653
Hsp92I	GRCGYC	3 cut(s)	8, 335, 543
Hsp92II	CATG	2 cut(s)	96, 482
HspAI	GCGC	1 cut(s)	246
Kzo9I	GATC	2 cut(s)	482, 724
LguI	GCTCTTC	1 cut(s)	556
Lsp1109I	GCAGC	2 cut(s)	448, 451
MaeII	ACGT	5 cut(s)	8, 216, 253, 543, 653
MalI	GATC	2 cut(s)	484, 726
MboI	GATC	2 cut(s)	482, 724
MboII	GAAGA	4 cut(s)	267, 270, 337, 573
MflI	RGATCY	2 cut(s)	482, 724
MlyI	GAGTC	5 cut(s)	8, 101, 187, 516, 549
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	8 cut(s)	108, 168, 292, 295, 360, 448, 500, 658
MroXI	GAANNNNTTC	1 cut(s)	87
MslI	CAYNNNNRTG	1 cut(s)	757
MspI	CCGG	5 cut(s)	18, 486, 702, 722, 743
MspR9I	CCNGG	1 cut(s)	744
MvnI	CGCG	1 cut(s)	248
MwoI	GCNNNNNNNGC	2 cut(s)	85, 470
NciI	CCSGG	1 cut(s)	744
NdeII	GATC	2 cut(s)	482, 724
NlaIII	CATG	2 cut(s)	96, 482
NlaIV	GGNNCC	1 cut(s)	484
NmuCI	GTSAC	3 cut(s)	104, 161, 212
PciSI	GCTCTTC	1 cut(s)	556
PdmI	GAANNNNTTC	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	516
PfoI	TCCNGGA	1 cut(s)	742
PkrI	GCNGC	2 cut(s)	463, 466
PleI	GAGTC	5 cut(s)	8, 101, 187, 516, 549
PmaCI	CACGTG	1 cut(s)	654
PmlI	CACGTG	1 cut(s)	654
PpsI	GAGTC	5 cut(s)	8, 101, 187, 516, 549
Ppu21I	YACGTR	1 cut(s)	654
PshAI	GACNNNNGTC	1 cut(s)	526
Psp1406I	AACGTT	1 cut(s)	253
PspCI	CACGTG	1 cut(s)	654
PspN4I	GGNNCC	1 cut(s)	484
PstNI	CAGNNNCTG	1 cut(s)	389
PsuI	RGATCY	2 cut(s)	482, 724
RsaI	GTAC	4 cut(s)	205, 235, 592, 710
RsaNI	GTAC	4 cut(s)	204, 234, 591, 709
RseI	CAYNNNNRTG	1 cut(s)	757
SapI	GCTCTTC	1 cut(s)	556
SatI	GCNGC	2 cut(s)	462, 465
Sau3AI	GATC	2 cut(s)	482, 724
ScaI	AGTACT	1 cut(s)	710
SchI	GAGTC	5 cut(s)	8, 101, 187, 516, 549
ScrFI	CCNGG	1 cut(s)	744
SmiMI	CAYNNNNRTG	1 cut(s)	757
SsiI	CCGC	1 cut(s)	259
StyD4I	CCNGG	1 cut(s)	742
TaaI	ACNGT	6 cut(s)	61, 200, 317, 385, 586, 623
TaiI	ACGT	5 cut(s)	11, 219, 256, 546, 656
TaqI	TCGA	2 cut(s)	269, 663
TatI	WGTACW	1 cut(s)	708
TfiI	GAWTC	1 cut(s)	516
TseFI	GTSAC	3 cut(s)	104, 161, 212
TseI	GCWGC	2 cut(s)	461, 464
Tsp45I	GTSAC	3 cut(s)	104, 161, 212
TspDTI	ATGAA	1 cut(s)	56
TspGWI	ACGGA	3 cut(s)	200, 312, 414
XmnI	GAANNNNTTC	1 cut(s)	87
ZraI	GACGTC	2 cut(s)	9, 544
ZrmI	AGTACT	1 cut(s)	710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.