Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0013962

Physical Location & Seq

Genomic Coordinates Forward (+)

17972858 .. 17973601

Gene Structure 744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g23830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGCCGTCGGACTCCGGGGATCAGCAGCAGAACAACAGCCAGAACCGGAGGACGGTGAAAGCCACCCAGGCCACGGGGGCCCCACCGCCGGAGCAAGAGCACCTGCCCTGCCCGCGCTGCGACTCCACCAACACCAAGTTCTGCTATTACAACAACTACAACTTCTCCCAGCCCCGGCACTTTTGCAAATCCTGCCGCCGCTACTGGACCCACGGGGGCACCCTCCGCGACATCCCCGTCGGCGGCGGCACCCGCAAAAACGCCAAGCGTTCCCGCACCGCCGCTTCCGCCGCCTCAGTCGCCACAACCACCACAACTTCAGACAACGACCCGATTTCGGCCACCCCATTTTTTCTCAACCCAGGTGTCGGAGCGGCCTTACAGTTGAGTGATTTGAAGGGTAACATGGGAAATGGATGCGGCGGTGGCGGCGGCAGTGGCAGCTTCACTTCTCTGCTCAACACCCACGGGCCTGGTGGGTTTTTGGCTCTGGGCGGGTTCGGGCTGGGGCTGGCGGGTGGTTTTGAGGAGATGGGGTTTGGGCTTGGGAGAGCGGTCTGGCCCTTTGCTGGGATGGGAGGAGACGGTGTTGCGGGTGGGACCCACGGTGGGATGATGAACATGTGGCAGCTCGAGAACGGAGAGGGTGGTGGGATTGTGAATGTGGGTGTTGGACCCGTTGGAGCAGAGTTCTGTTCTTGGCCGGAGTTGGCAATTTCTACTCCTGGAAATGGACTAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0042545 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0045787 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051726 GO:0060255 GO:0065007 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

248

Amino Acids

25.41

Weight (kDa)

8.18

Isoelectric Point (pI)

34.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	33 - 89	1.1e-33	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50410 AT5G66940
fragaria_vesca	FvH4_1g14790
malus_domestica	MD02G1161200.v1.1 MD15G1275300.v1.1
prunus_persica	Prupe.7G142500_v2.0.a1
pyrus_communis	pycom02g12720 pycom15g23830
rosa_chinensis	RchiOBHm_Chr2g0103751
rosa_laevigata	RLG00000017255
rosa_multiflora	Rmu_sc0001852.1_g000001
rosa_rugosa	Rorug02G0117100
rosa_samantha	Rh2AG166000 Rh2BG173300 Rh2CG172000 Rh2DG171500
rosa_wichuraiana	Rw2G013000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	111
AasI	GACNNNNNNGTC	1 cut(s)	236
Acc36I	ACCTGC	1 cut(s)	111
AccB1I	GGYRCC	2 cut(s)	218, 248
AccBSI	CCGCTC	2 cut(s)	374, 554
AccII	CGCG	2 cut(s)	115, 228
AclWI	GGATC	1 cut(s)	27
AcoI	YGGCCR	2 cut(s)	339, 701
AcuI	CTGAAG	1 cut(s)	303
AflIII	ACRYGT	1 cut(s)	621
AgsI	TTSAA	1 cut(s)	397
AjnI	CCWGG	4 cut(s)	66, 361, 472, 724
AjuI	GAANNNNNNNTTGG	2 cut(s)	122, 154
AluBI	AGCT	2 cut(s)	444, 631
AluI	AGCT	2 cut(s)	444, 631
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	1 cut(s)	576
AlwI	GGATC	1 cut(s)	27
Ama87I	CYCGRG	1 cut(s)	632
AoxI	GGCC	7 cut(s)	69, 78, 339, 375, 470, 560, 701
ApaI	GGGCCC	1 cut(s)	82
ApeKI	GCWGC	4 cut(s)	25, 117, 441, 628
AspLEI	GCGC	1 cut(s)	117
AspS9I	GGNCC	7 cut(s)	78, 79, 207, 470, 561, 600, 674
AsuC2I	CCSGG	2 cut(s)	16, 175
AsuHPI	GGTGA	1 cut(s)	67
AvaI	CYCGRG	1 cut(s)	632
AvaII	GGWCC	3 cut(s)	207, 600, 674
BaeGI	GKGCMC	2 cut(s)	82, 221
BanI	GGYRCC	2 cut(s)	218, 248
BanII	GRGCYC	1 cut(s)	82
Bbv12I	GWGCWC	1 cut(s)	102
BbvI	GCAGC	4 cut(s)	37, 104, 453, 640
BccI	CCATC	2 cut(s)	526, 568
BciT130I	CCWGG	4 cut(s)	68, 363, 474, 726
BcnI	CCSGG	2 cut(s)	16, 175
BcoDI	GTCTC	1 cut(s)	576
BfuAI	ACCTGC	1 cut(s)	111
BglI	GCCNNNNNGGC	2 cut(s)	68, 77
Bme1390I	CCNGG	6 cut(s)	16, 68, 175, 363, 474, 726
Bme18I	GGWCC	3 cut(s)	207, 600, 674
BmeT110I	CYCGRG	1 cut(s)	632
BmgT120I	GGNCC	7 cut(s)	78, 79, 207, 470, 561, 600, 674
BmiI	GGNNCC	9 cut(s)	79, 80, 81, 209, 220, 250, 601, 602, 676
BmrFI	CCNGG	6 cut(s)	16, 68, 175, 363, 474, 726
BmsI	GCATC	1 cut(s)	407
BpuMI	CCSGG	2 cut(s)	16, 175
BsaJI	CCNNGG	8 cut(s)	15, 66, 72, 173, 211, 361, 466, 604
BsaWI	WCCGGW	1 cut(s)	45
BsaXI	ACNNNNNCTCC	6 cut(s)	149, 179, 521, 551, 573, 603
Bse1I	ACTGG	1 cut(s)	209
BseBI	CCWGG	4 cut(s)	68, 363, 474, 726
BseDI	CCNNGG	8 cut(s)	15, 66, 72, 173, 211, 361, 466, 604
BseGI	GGATG	4 cut(s)	231, 422, 579, 618
BseMII	CTCAG	1 cut(s)	309
BseNI	ACTGG	1 cut(s)	209
BseRI	GAGGAG	2 cut(s)	542, 594
BseSI	GKGCMC	2 cut(s)	82, 221
BseXI	GCAGC	4 cut(s)	37, 104, 453, 640
BseYI	CCCAGC	3 cut(s)	168, 505, 569
Bsh1236I	CGCG	2 cut(s)	115, 228
BshFI	GGCC	7 cut(s)	71, 80, 341, 377, 472, 562, 703
BshNI	GGYRCC	2 cut(s)	218, 248
BsiHKAI	GWGCWC	1 cut(s)	102
BsiHKCI	CYCGRG	1 cut(s)	632
BsiSI	CCGG	5 cut(s)	15, 46, 89, 175, 704
BslFI	GGGAC	1 cut(s)	613
BsmAI	GTCTC	1 cut(s)	576
BsmBI	CGTCTC	1 cut(s)	576
BsmFI	GGGAC	1 cut(s)	613
BsnI	GGCC	7 cut(s)	71, 80, 341, 377, 472, 562, 703
BsoBI	CYCGRG	1 cut(s)	632
Bsp120I	GGGCCC	1 cut(s)	78
Bsp1286I	GDGCHC	3 cut(s)	82, 102, 221
Bsp143I	GATC	1 cut(s)	19
BspANI	GGCC	7 cut(s)	71, 80, 341, 377, 472, 562, 703
BspCNI	CTCAG	1 cut(s)	308
BspFNI	CGCG	2 cut(s)	115, 228
BspLI	GGNNCC	9 cut(s)	79, 80, 81, 209, 220, 250, 601, 602, 676
BspMI	ACCTGC	1 cut(s)	111
BspPI	GGATC	1 cut(s)	27
BspT107I	GGYRCC	2 cut(s)	218, 248
BsrBI	CCGCTC	2 cut(s)	374, 554
BsrI	ACTGG	1 cut(s)	209
BssECI	CCNNGG	8 cut(s)	15, 66, 72, 173, 211, 361, 466, 604
BssMI	GATC	1 cut(s)	19
Bst2UI	CCWGG	4 cut(s)	68, 363, 474, 726
Bst4CI	ACNGT	4 cut(s)	55, 384, 587, 608
BstAPI	GCANNNNNTGC	1 cut(s)	192
BstC8I	GCNNGC	2 cut(s)	113, 513
BstDEI	CTNAG	1 cut(s)	295
BstDSI	CCRYGG	4 cut(s)	72, 211, 466, 604
BstF5I	GGATG	4 cut(s)	231, 422, 579, 618
BstFNI	CGCG	2 cut(s)	115, 228
BstHHI	GCGC	1 cut(s)	117
BstKTI	GATC	1 cut(s)	22
BstMAI	GTCTC	1 cut(s)	576
BstMBI	GATC	1 cut(s)	19
BstNI	CCWGG	4 cut(s)	68, 363, 474, 726
BstNSI	RCATGY	1 cut(s)	625
BstSCI	CCNGG	6 cut(s)	14, 66, 173, 361, 472, 724
BstSLI	GKGCMC	2 cut(s)	82, 221
BstUI	CGCG	2 cut(s)	115, 228
BstV1I	GCAGC	4 cut(s)	37, 104, 453, 640
BstXI	CCANNNNNNTGG	1 cut(s)	473
BsuRI	GGCC	7 cut(s)	71, 80, 341, 377, 472, 562, 703
BtgI	CCRYGG	4 cut(s)	72, 211, 466, 604
BtsCI	GGATG	4 cut(s)	231, 422, 579, 618
BtsI	GCAGTG	1 cut(s)	442
BtsIMutI	CAGTG	1 cut(s)	442
BveI	ACCTGC	1 cut(s)	111
Cac8I	GCNNGC	2 cut(s)	113, 513
CfoI	GCGC	1 cut(s)	117
Cfr13I	GGNCC	7 cut(s)	78, 79, 207, 470, 561, 600, 674
CviAII	CATG	2 cut(s)	406, 622
DdeI	CTNAG	1 cut(s)	295
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
DrdI	GACNNNNNNGTC	1 cut(s)	236
DseDI	GACNNNNNNGTC	1 cut(s)	236
EaeI	YGGCCR	2 cut(s)	339, 701
EciI	GGCGGA	1 cut(s)	277
Eco24I	GRGCYC	1 cut(s)	82
Eco47I	GGWCC	3 cut(s)	207, 600, 674
Eco57I	CTGAAG	1 cut(s)	303
Eco88I	CYCGRG	1 cut(s)	632
EcoO109I	RGGNCCY	3 cut(s)	78, 79, 600
EcoRII	CCWGG	4 cut(s)	66, 361, 472, 724
EcoT38I	GRGCYC	1 cut(s)	82
Esp3I	CGTCTC	1 cut(s)	576
FaeI	CATG	2 cut(s)	409, 625
FaiI	YATR	2 cut(s)	407, 623
FaqI	GGGAC	1 cut(s)	613
FatI	CATG	2 cut(s)	405, 621
FauI	CCCGC	6 cut(s)	120, 260, 281, 488, 508, 586
FokI	GGATG	4 cut(s)	218, 429, 586, 625
FriOI	GRGCYC	1 cut(s)	82
GlaI	GCGC	1 cut(s)	116
GsaI	CCCAGC	3 cut(s)	172, 509, 573
HaeIII	GGCC	7 cut(s)	71, 80, 341, 377, 472, 562, 703
HapII	CCGG	5 cut(s)	15, 46, 89, 175, 704
HhaI	GCGC	1 cut(s)	117
Hin1II	CATG	2 cut(s)	409, 625
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HinfI	GANTC	2 cut(s)	11, 122
HpaII	CCGG	5 cut(s)	15, 46, 89, 175, 704
HphI	GGTGA	1 cut(s)	67
Hpy188I	TCNGA	3 cut(s)	10, 322, 371
Hpy188III	TCNNGA	1 cut(s)	634
Hpy99I	CGWCG	2 cut(s)	10, 242
HpyAV	CCTTC	1 cut(s)	391
HpyCH4III	ACNGT	4 cut(s)	55, 384, 587, 608
HpyCH4V	TGCA	1 cut(s)	186
HpyF3I	CTNAG	1 cut(s)	295
Hsp92II	CATG	2 cut(s)	409, 625
HspAI	GCGC	1 cut(s)	115
KflI	GGGWCCC	1 cut(s)	600
Kzo9I	GATC	1 cut(s)	19
LmnI	GCTCC	3 cut(s)	91, 371, 683
Lsp1109I	GCAGC	4 cut(s)	37, 104, 453, 640
LweI	GCATC	1 cut(s)	407
MaeIII	GTNAC	1 cut(s)	401
MalI	GATC	1 cut(s)	21
MbiI	CCGCTC	2 cut(s)	374, 554
MboI	GATC	1 cut(s)	19
MhlI	GDGCHC	3 cut(s)	82, 102, 221
MluCI	AATT	1 cut(s)	714
MlyI	GAGTC	2 cut(s)	5, 116
MmeI	TCCRAC	3 cut(s)	349, 652, 661
MnlI	CCTC	6 cut(s)	42, 233, 304, 520, 572, 637
MspI	CCGG	5 cut(s)	15, 46, 89, 175, 704
MspR9I	CCNGG	6 cut(s)	16, 68, 175, 363, 474, 726
MvaI	CCWGG	4 cut(s)	68, 363, 474, 726
MvnI	CGCG	2 cut(s)	115, 228
NciI	CCSGG	2 cut(s)	16, 175
NdeII	GATC	1 cut(s)	19
NlaIII	CATG	2 cut(s)	409, 625
NlaIV	GGNNCC	9 cut(s)	79, 80, 81, 209, 220, 250, 601, 602, 676
NspI	RCATGY	1 cut(s)	625
PaeR7I	CTCGAG	1 cut(s)	632
PaqCI	CACCTGC	1 cut(s)	111
PciI	ACATGT	1 cut(s)	621
PfoI	TCCNGGA	1 cut(s)	724
PleI	GAGTC	2 cut(s)	5, 116
PpsI	GAGTC	2 cut(s)	5, 116
PpuMI	RGGWCCY	1 cut(s)	600
PscI	ACATGT	1 cut(s)	621
Psp5II	RGGWCCY	1 cut(s)	600
Psp6I	CCWGG	4 cut(s)	66, 361, 472, 724
PspFI	CCCAGC	3 cut(s)	168, 505, 569
PspGI	CCWGG	4 cut(s)	66, 361, 472, 724
PspN4I	GGNNCC	9 cut(s)	79, 80, 81, 209, 220, 250, 601, 602, 676
PspOMI	GGGCCC	1 cut(s)	78
PspPI	GGNCC	7 cut(s)	78, 79, 207, 470, 561, 600, 674
PspPPI	RGGWCCY	1 cut(s)	600
Sau3AI	GATC	1 cut(s)	19
Sau96I	GGNCC	7 cut(s)	78, 79, 207, 470, 561, 600, 674
SchI	GAGTC	2 cut(s)	5, 116
ScrFI	CCNGG	6 cut(s)	16, 68, 175, 363, 474, 726
SduI	GDGCHC	3 cut(s)	82, 102, 221
SetI	ASST	4 cut(s)	105, 367, 446, 633
SfaNI	GCATC	1 cut(s)	407
SfiI	GGCCNNNNNGGCC	1 cut(s)	77
Sfr274I	CTCGAG	1 cut(s)	632
SinI	GGWCC	3 cut(s)	207, 600, 674
SlaI	CTCGAG	1 cut(s)	632
SmlI	CTYRAG	1 cut(s)	632
SmoI	CTYRAG	1 cut(s)	632
Sse9I	AATT	1 cut(s)	714
StyD4I	CCNGG	6 cut(s)	14, 66, 173, 361, 472, 724
TaaI	ACNGT	4 cut(s)	55, 384, 587, 608
TaqI	TCGA	1 cut(s)	633
TasI	AATT	1 cut(s)	714
TscAI	CASTG	1 cut(s)	442
TseI	GCWGC	4 cut(s)	25, 117, 441, 628
TspDTI	ATGAA	1 cut(s)	632
TspGWI	ACGGA	1 cut(s)	654
TspRI	CASTG	1 cut(s)	442
VpaK11BI	GGWCC	3 cut(s)	207, 600, 674
XceI	RCATGY	1 cut(s)	625
XcmI	CCANNNNNNNNNTGG	1 cut(s)	473
XhoI	CTCGAG	1 cut(s)	632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.