Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0013962

Physical Location & Seq

Genomic Coordinates Forward (+)

15605459 .. 15606178

Gene Structure 720 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG166000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGCCGTCGGACTCGGGCGACCCGAACAACCGGAGACCCACCAAGGCGCAGAGTCTGGGAGCTCCGCCGCCGGAGCAGGAGCACCTCCCTTGTCCCCGCTGCGAGTCCACCAACACCAAGTTCTGCTACTACAACAACTACAACTTCTCTCAGCCTCGTCACTTCTGCAAGTCCTGCCGCCGCTACTGGACCCATGGTGGGACCCTACGTGACATCCCCGTCGGCGGCGGCAGCCGCAAGAACGCCAAGCGCTCCCGCACCTCCTCCACTGGTTCCATGGTCTCTTCTGCATCTGATCACGCCTTGCCGGCCACCCCGGTTTTCGTGCCGGTCTCGGCTGGACAAGGCGGCGCCGGTGGCGGGGCCGGGCAGTTCGGCGGTTGCGGTGTGAAGGGGAATGTGAGTAATGGAGGGAGCTTTACTTCTCTGCTCAACACTCAGCCCGGGTTTTTGGCGCTGGGAGGATTTGGGCTTGGGCTTGCGACTGGGTTTGAGGAGATGGGCTTTGGGTTCGGGAGAGCGATGTGGCCTTTTCCCGGGGTGGGTTCGGATGGTGGTGCTGGAATCGGGGCGAACGGCGTGTCGCATGGGATGATGAACACGTGGCAGTTCGAGAATGGTGAGACCGGTGGGCTTGTTAACGTTGGTCTTGGTGGTGGTGGAGAGTTCTGTTCTTGGCCAGAGCTGGCAATTTCTACTCCTGGTAATGGTCTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0042545 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0045787 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051726 GO:0060255 GO:0065007 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

239

Amino Acids

24.53

Weight (kDa)

8.73

Isoelectric Point (pI)

38.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	27 - 83	1.1e-33	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50410 AT5G66940
fragaria_vesca	FvH4_1g14790
malus_domestica	MD02G1161200.v1.1 MD15G1275300.v1.1
prunus_persica	Prupe.7G142500_v2.0.a1
pyrus_communis	pycom02g12720 pycom15g23830
rosa_chinensis	RchiOBHm_Chr2g0103751
rosa_laevigata	RLG00000017255
rosa_multiflora	Rmu_sc0001852.1_g000001
rosa_rugosa	Rorug02G0117100
rosa_samantha	Rh2AG166000 Rh2BG173300 Rh2CG172000 Rh2DG171500
rosa_wichuraiana	Rw2G013000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	218
AccB1I	GGYRCC	1 cut(s)	350
AclI	AACGTT	1 cut(s)	642
AcoI	YGGCCR	2 cut(s)	309, 677
AcvI	CACGTG	1 cut(s)	603
AcyI	GRCGYC	1 cut(s)	351
AfeI	AGCGCT	1 cut(s)	251
AfiI	CCNNNNNNNGG	6 cut(s)	198, 224, 360, 536, 542, 707
AflIII	ACRYGT	1 cut(s)	600
AgeI	ACCGGT	1 cut(s)	626
AjnI	CCWGG	1 cut(s)	700
AjuI	GAANNNNNNNTTGG	2 cut(s)	104, 136
AluBI	AGCT	3 cut(s)	62, 417, 685
AluI	AGCT	3 cut(s)	62, 417, 685
Alw21I	GWGCWC	2 cut(s)	64, 84
Alw26I	GTCTC	5 cut(s)	28, 286, 337, 617, 716
AlwNI	CAGNNNCTG	1 cut(s)	55
Ama87I	CYCGRG	3 cut(s)	13, 443, 536
Aor51HI	AGCGCT	1 cut(s)	251
AoxI	GGCC	4 cut(s)	309, 363, 527, 677
ApeKI	GCWGC	2 cut(s)	99, 231
ArsI	GACNNNNNNTTYG	2 cut(s)	566, 598
AsiGI	ACCGGT	1 cut(s)	626
AspLEI	GCGC	4 cut(s)	49, 252, 353, 457
AspS9I	GGNCC	3 cut(s)	189, 201, 363
AsuC2I	CCSGG	6 cut(s)	317, 367, 444, 445, 537, 538
AsuHPI	GGTGA	1 cut(s)	632
AvaI	CYCGRG	3 cut(s)	13, 443, 536
AvaII	GGWCC	2 cut(s)	189, 201
BalI	TGGCCA	1 cut(s)	679
BanI	GGYRCC	1 cut(s)	350
BanII	GRGCYC	1 cut(s)	64
BbrPI	CACGTG	1 cut(s)	603
Bbv12I	GWGCWC	2 cut(s)	64, 84
BbvI	GCAGC	2 cut(s)	86, 243
BccI	CCATC	2 cut(s)	493, 545
BceAI	ACGGC	1 cut(s)	592
BciT130I	CCWGG	1 cut(s)	702
BclI	TGATCA	1 cut(s)	295
BcnI	CCSGG	6 cut(s)	317, 367, 444, 445, 537, 538
BcoDI	GTCTC	5 cut(s)	28, 286, 337, 617, 716
BfoI	RGCGCY	3 cut(s)	253, 354, 458
BglI	GCCNNNNNGGC	1 cut(s)	308
BisI	GCNGC	9 cut(s)	68, 100, 178, 181, 226, 229, 232, 235, 349
BlsI	GCNGC	9 cut(s)	69, 101, 179, 182, 227, 230, 233, 236, 350
Bme1390I	CCNGG	7 cut(s)	317, 367, 444, 445, 537, 538, 702
Bme18I	GGWCC	2 cut(s)	189, 201
BmeT110I	CYCGRG	3 cut(s)	13, 443, 536
BmgT120I	GGNCC	3 cut(s)	189, 201, 363
BmiI	GGNNCC	6 cut(s)	191, 202, 203, 274, 352, 364
BmrFI	CCNGG	7 cut(s)	317, 367, 444, 445, 537, 538, 702
BmrI	ACTGGG	1 cut(s)	495
BmsI	GCATC	1 cut(s)	299
BmuI	ACTGGG	1 cut(s)	495
BpuEI	CTTGAG	1 cut(s)	698
BpuMI	CCSGG	6 cut(s)	317, 367, 444, 445, 537, 538
BsaAI	YACGTR	2 cut(s)	209, 603
BsaHI	GRCGYC	1 cut(s)	351
BsaI	GGTCTC	5 cut(s)	28, 286, 337, 617, 716
BsaJI	CCNNGG	7 cut(s)	42, 193, 276, 315, 443, 536, 537
BsaWI	WCCGGW	2 cut(s)	30, 626
Bsc4I	CCNNNNNNNGG	6 cut(s)	198, 224, 360, 536, 542, 707
Bse118I	RCCGGY	4 cut(s)	307, 328, 353, 626
Bse1I	ACTGG	3 cut(s)	191, 274, 490
BseBI	CCWGG	1 cut(s)	702
BseDI	CCNNGG	7 cut(s)	42, 193, 276, 315, 443, 536, 537
BseGI	GGATG	3 cut(s)	213, 556, 597
BseLI	CCNNNNNNNGG	6 cut(s)	198, 224, 360, 536, 542, 707
BseMII	CTCAG	2 cut(s)	164, 452
BseNI	ACTGG	3 cut(s)	191, 274, 490
BseRI	GAGGAG	2 cut(s)	253, 509
BseXI	GCAGC	2 cut(s)	86, 243
BseYI	CCCAGC	1 cut(s)	457
BshFI	GGCC	4 cut(s)	311, 365, 529, 679
BshNI	GGYRCC	1 cut(s)	350
BshTI	ACCGGT	1 cut(s)	626
BsiHKAI	GWGCWC	2 cut(s)	64, 84
BsiHKCI	CYCGRG	3 cut(s)	13, 443, 536
BslFI	GGGAC	2 cut(s)	78, 214
BslI	CCNNNNNNNGG	6 cut(s)	198, 224, 360, 536, 542, 707
BsmAI	GTCTC	5 cut(s)	28, 286, 337, 617, 716
BsmFI	GGGAC	2 cut(s)	78, 214
BsnI	GGCC	4 cut(s)	311, 365, 529, 679
Bso31I	GGTCTC	5 cut(s)	28, 286, 337, 617, 716
BsoBI	CYCGRG	3 cut(s)	13, 443, 536
Bsp1286I	GDGCHC	2 cut(s)	64, 84
Bsp143I	GATC	1 cut(s)	295
Bsp19I	CCATGG	2 cut(s)	193, 276
BspANI	GGCC	4 cut(s)	311, 365, 529, 679
BspCNI	CTCAG	2 cut(s)	163, 451
BspLI	GGNNCC	6 cut(s)	191, 202, 203, 274, 352, 364
BspT107I	GGYRCC	1 cut(s)	350
BspTNI	GGTCTC	5 cut(s)	28, 286, 337, 617, 716
BsrFI	RCCGGY	4 cut(s)	307, 328, 353, 626
BsrI	ACTGG	3 cut(s)	191, 274, 490
BssAI	RCCGGY	4 cut(s)	307, 328, 353, 626
BssECI	CCNNGG	7 cut(s)	42, 193, 276, 315, 443, 536, 537
BssMI	GATC	1 cut(s)	295
BssNI	GRCGYC	1 cut(s)	351
BssT1I	CCWWGG	3 cut(s)	42, 193, 276
Bst2UI	CCWGG	1 cut(s)	702
Bst6I	CTCTTC	1 cut(s)	289
BstACI	GRCGYC	1 cut(s)	351
BstAPI	GCANNNNNTGC	1 cut(s)	174
BstBAI	YACGTR	2 cut(s)	209, 603
BstC8I	GCNNGC	3 cut(s)	309, 480, 687
BstDEI	CTNAG	2 cut(s)	150, 438
BstDSI	CCRYGG	2 cut(s)	193, 276
BstF5I	GGATG	3 cut(s)	213, 556, 597
BstH2I	RGCGCY	3 cut(s)	253, 354, 458
BstHHI	GCGC	4 cut(s)	49, 252, 353, 457
BstKTI	GATC	1 cut(s)	298
BstMAI	GTCTC	5 cut(s)	28, 286, 337, 617, 716
BstMBI	GATC	1 cut(s)	295
BstMWI	GCNNNNNNNGC	6 cut(s)	73, 174, 231, 234, 308, 357
BstNI	CCWGG	1 cut(s)	702
BstSCI	CCNGG	7 cut(s)	315, 365, 442, 443, 535, 536, 700
BstV1I	GCAGC	2 cut(s)	86, 243
BsuRI	GGCC	4 cut(s)	311, 365, 529, 679
BtgI	CCRYGG	2 cut(s)	193, 276
BtgZI	GCGATG	1 cut(s)	536
BtsCI	GGATG	3 cut(s)	213, 556, 597
BtsIMutI	CAGTG	1 cut(s)	267
Cac8I	GCNNGC	3 cut(s)	309, 480, 687
CaiI	CAGNNNCTG	1 cut(s)	55
CfoI	GCGC	4 cut(s)	49, 252, 353, 457
Cfr10I	RCCGGY	4 cut(s)	307, 328, 353, 626
Cfr13I	GGNCC	3 cut(s)	189, 201, 363
Cfr9I	CCCGGG	2 cut(s)	443, 536
CspAI	ACCGGT	1 cut(s)	626
CviAII	CATG	3 cut(s)	194, 277, 587
DdeI	CTNAG	2 cut(s)	150, 438
DinI	GGCGCC	1 cut(s)	352
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
DrdI	GACNNNNNNGTC	1 cut(s)	218
DseDI	GACNNNNNNGTC	1 cut(s)	218
EaeI	YGGCCR	2 cut(s)	309, 677
Eam1104I	CTCTTC	1 cut(s)	289
EarI	CTCTTC	1 cut(s)	289
EciI	GGCGGA	1 cut(s)	54
Ecl136II	GAGCTC	1 cut(s)	62
Eco130I	CCWWGG	3 cut(s)	42, 193, 276
Eco24I	GRGCYC	1 cut(s)	64
Eco31I	GGTCTC	5 cut(s)	28, 286, 337, 617, 716
Eco47I	GGWCC	2 cut(s)	189, 201
Eco47III	AGCGCT	1 cut(s)	251
Eco53kI	GAGCTC	1 cut(s)	62
Eco72I	CACGTG	1 cut(s)	603
Eco88I	CYCGRG	3 cut(s)	13, 443, 536
EcoICRI	GAGCTC	1 cut(s)	62
EcoO109I	RGGNCCY	1 cut(s)	201
EcoRII	CCWGG	1 cut(s)	700
EcoT14I	CCWWGG	3 cut(s)	42, 193, 276
EcoT38I	GRGCYC	1 cut(s)	64
EgeI	GGCGCC	1 cut(s)	352
EheI	GGCGCC	1 cut(s)	352
ErhI	CCWWGG	3 cut(s)	42, 193, 276
FaeI	CATG	3 cut(s)	197, 280, 590
FaiI	YATR	3 cut(s)	195, 278, 588
FaqI	GGGAC	2 cut(s)	78, 214
FatI	CATG	3 cut(s)	193, 276, 586
FauI	CCCGC	3 cut(s)	104, 263, 353
FbaI	TGATCA	1 cut(s)	295
Fnu4HI	GCNGC	9 cut(s)	68, 100, 178, 181, 226, 229, 232, 235, 349
FokI	GGATG	3 cut(s)	200, 563, 604
FriOI	GRGCYC	1 cut(s)	64
Fsp4HI	GCNGC	9 cut(s)	68, 100, 178, 181, 226, 229, 232, 235, 349
GlaI	GCGC	4 cut(s)	48, 251, 352, 456
GluI	GCNGC	9 cut(s)	68, 100, 178, 181, 226, 229, 232, 235, 349
GsaI	CCCAGC	1 cut(s)	461
HaeII	RGCGCY	3 cut(s)	253, 354, 458
HaeIII	GGCC	4 cut(s)	311, 365, 529, 679
HhaI	GCGC	4 cut(s)	49, 252, 353, 457
Hin1I	GRCGYC	1 cut(s)	351
Hin1II	CATG	3 cut(s)	197, 280, 590
Hin6I	GCGC	4 cut(s)	47, 250, 351, 455
HinP1I	GCGC	4 cut(s)	47, 250, 351, 455
HincII	GTYRAC	1 cut(s)	640
HindII	GTYRAC	1 cut(s)	640
HinfI	GANTC	4 cut(s)	11, 52, 104, 564
HpaI	GTTAAC	1 cut(s)	640
HphI	GGTGA	1 cut(s)	632
Hpy166II	GTNNAC	2 cut(s)	108, 640
Hpy188I	TCNGA	3 cut(s)	10, 295, 550
Hpy188III	TCNNGA	2 cut(s)	514, 613
Hpy8I	GTNNAC	2 cut(s)	108, 640
Hpy99I	CGWCG	2 cut(s)	10, 224
HpyAV	CCTTC	1 cut(s)	385
HpyCH4IV	ACGT	3 cut(s)	208, 602, 642
HpyCH4V	TGCA	2 cut(s)	168, 290
HpyF10VI	GCNNNNNNNGC	6 cut(s)	73, 174, 231, 234, 308, 357
HpyF3I	CTNAG	2 cut(s)	150, 438
HpySE526I	ACGT	3 cut(s)	208, 602, 642
Hsp92I	GRCGYC	1 cut(s)	351
Hsp92II	CATG	3 cut(s)	197, 280, 590
HspAI	GCGC	4 cut(s)	47, 250, 351, 455
KasI	GGCGCC	1 cut(s)	350
KflI	GGGWCCC	1 cut(s)	201
KroI	GCCGGC	1 cut(s)	307
KroNI	GCCGGC	1 cut(s)	309
Ksp22I	TGATCA	1 cut(s)	295
KspAI	GTTAAC	1 cut(s)	640
Kzo9I	GATC	1 cut(s)	295
LmnI	GCTCC	6 cut(s)	59, 67, 73, 79, 257, 414
Lsp1109I	GCAGC	2 cut(s)	86, 243
LweI	GCATC	1 cut(s)	299
MaeII	ACGT	3 cut(s)	208, 602, 642
MaeIII	GTNAC	2 cut(s)	158, 209
MalI	GATC	1 cut(s)	297
MboI	GATC	1 cut(s)	295
MboII	GAAGA	1 cut(s)	276
MhlI	GDGCHC	2 cut(s)	64, 84
MlsI	TGGCCA	1 cut(s)	679
MluCI	AATT	1 cut(s)	690
MluNI	TGGCCA	1 cut(s)	679
Mly113I	GGCGCC	1 cut(s)	351
MlyI	GAGTC	3 cut(s)	5, 61, 113
MnlI	CCTC	7 cut(s)	95, 165, 271, 274, 404, 455, 487
Mox20I	TGGCCA	1 cut(s)	679
MroNI	GCCGGC	1 cut(s)	307
MscI	TGGCCA	1 cut(s)	679
MseI	TTAA	1 cut(s)	639
Msp20I	TGGCCA	1 cut(s)	679
MspA1I	CMGCKG	1 cut(s)	99
MspR9I	CCNGG	7 cut(s)	317, 367, 444, 445, 537, 538, 702
MvaI	CCWGG	1 cut(s)	702
MwoI	GCNNNNNNNGC	6 cut(s)	73, 174, 231, 234, 308, 357
NaeI	GCCGGC	1 cut(s)	309
NarI	GGCGCC	1 cut(s)	351
NciI	CCSGG	6 cut(s)	317, 367, 444, 445, 537, 538
NcoI	CCATGG	2 cut(s)	193, 276
NdeII	GATC	1 cut(s)	295
NgoMIV	GCCGGC	1 cut(s)	307
NlaIII	CATG	3 cut(s)	197, 280, 590
NlaIV	GGNNCC	6 cut(s)	191, 202, 203, 274, 352, 364
NmeAIII	GCCGAG	1 cut(s)	314
NmuCI	GTSAC	2 cut(s)	158, 209
PcsI	WCGNNNNNNNCGW	1 cut(s)	20
PdiI	GCCGGC	1 cut(s)	309
PfeI	GAWTC	1 cut(s)	564
PinAI	ACCGGT	1 cut(s)	626
PkrI	GCNGC	9 cut(s)	69, 101, 179, 182, 227, 230, 233, 236, 350
PleI	GAGTC	3 cut(s)	5, 60, 112
PluTI	GGCGCC	1 cut(s)	354
PmaCI	CACGTG	1 cut(s)	603
PmlI	CACGTG	1 cut(s)	603
PpsI	GAGTC	3 cut(s)	5, 60, 112
Ppu21I	YACGTR	2 cut(s)	209, 603
PpuMI	RGGWCCY	1 cut(s)	201
Psp124BI	GAGCTC	1 cut(s)	64
Psp1406I	AACGTT	1 cut(s)	642
Psp5II	RGGWCCY	1 cut(s)	201
Psp6I	CCWGG	1 cut(s)	700
PspCI	CACGTG	1 cut(s)	603
PspFI	CCCAGC	1 cut(s)	457
PspGI	CCWGG	1 cut(s)	700
PspN4I	GGNNCC	6 cut(s)	191, 202, 203, 274, 352, 364
PspPI	GGNCC	3 cut(s)	189, 201, 363
PspPPI	RGGWCCY	1 cut(s)	201
PstNI	CAGNNNCTG	1 cut(s)	55
SacI	GAGCTC	1 cut(s)	64
SaqAI	TTAA	1 cut(s)	639
SatI	GCNGC	9 cut(s)	68, 100, 178, 181, 226, 229, 232, 235, 349
Sau3AI	GATC	1 cut(s)	295
Sau96I	GGNCC	3 cut(s)	189, 201, 363
SchI	GAGTC	3 cut(s)	5, 61, 113
ScrFI	CCNGG	7 cut(s)	317, 367, 444, 445, 537, 538, 702
SduI	GDGCHC	2 cut(s)	64, 84
SetI	ASST	8 cut(s)	64, 87, 211, 263, 419, 605, 645, 687
SfaNI	GCATC	1 cut(s)	299
SfoI	GGCGCC	1 cut(s)	352
SgrAI	CRCCGGYG	1 cut(s)	353
SinI	GGWCC	2 cut(s)	189, 201
SmaI	CCCGGG	2 cut(s)	445, 538
SmlI	CTYRAG	1 cut(s)	713
SmoI	CTYRAG	1 cut(s)	713
Sse9I	AATT	1 cut(s)	690
SspDI	GGCGCC	1 cut(s)	350
SstI	GAGCTC	1 cut(s)	64
StyD4I	CCNGG	7 cut(s)	315, 365, 442, 443, 535, 536, 700
StyI	CCWWGG	3 cut(s)	42, 193, 276
TaiI	ACGT	3 cut(s)	211, 605, 645
TaqI	TCGA	1 cut(s)	612
TasI	AATT	1 cut(s)	690
TauI	GCSGC	7 cut(s)	70, 180, 183, 228, 231, 237, 351
TfiI	GAWTC	1 cut(s)	564
Tru1I	TTAA	1 cut(s)	639
Tru9I	TTAA	1 cut(s)	639
TscAI	CASTG	1 cut(s)	274
TseFI	GTSAC	2 cut(s)	158, 209
TseI	GCWGC	2 cut(s)	99, 231
Tsp45I	GTSAC	2 cut(s)	158, 209
TspDTI	ATGAA	1 cut(s)	611
TspMI	CCCGGG	2 cut(s)	443, 536
TspRI	CASTG	1 cut(s)	274
VpaK11BI	GGWCC	2 cut(s)	189, 201
XcmI	CCANNNNNNNNNTGG	1 cut(s)	274
XmaI	CCCGGG	2 cut(s)	443, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.