Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0013962

Physical Location & Seq

Genomic Coordinates Forward (+)

24187449 .. 24188183

Gene Structure 735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1275300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGCCGTCGGACTCCGGGGATCAGCAGCAGAACAACAGCCAGAACCGGAGGACGGTGAAAGCCACCCAGGCCACGGGGGCCCCACCGCCGGAGCAAGAGCACCTGCCCTGCCCTCGCTGCGACTCCACCAACACCAAGTTCTGCTATTACAACAACTACAACTTCTCCCAGCCCCGCCACTTTTGCAAGTCCTGCCGCCGCTACTGGACCCACGGGGGCACCCTCCGCGACATCCCCGTCGGCGGCGGCACCCGCAAAAACGCCAAGCGTTCCCGCACCGCCGCCTCAGTCGCCACAACCACCACAACTTCTGACAACGACCCAATTTCGGCCACCCCATTTTTTCTCAACCCAGGTGTCGGAGCCGCCTTACAGTTGAGTGATTTGAAGGGTAGCATGGGAAATGGATGCGGCGGCGGTGGCGGCAGTGGCAGCTTCACTTCTCTGCTCAACACCCACGGGCCTGGTGGGTTTTTGGCTCTGGGCGGGTTCGGGCTTGGGCTGGCGGGTGGGTTTGAGGAGATGGGCTTTGGGCTTGGGAGAGCGGTCTGGCCTTTTCCTGGGATGGGAGGAGATGGTGTTGCGGGTGGGGCCCACGGTGGGATGATGAACATGTGGCAGCTCGAGAACGGAGAGGGTGGTGGGATTGTGAATGTGGGTGTTGGACCCGTCGGAGCTGAGTTCTGTTCTTGGCCGGAGTTGGCAATTTCTACTCCTGGAAATGGACTAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0042545 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0045787 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051726 GO:0060255 GO:0065007 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

245

Amino Acids

25.15

Weight (kDa)

8.18

Isoelectric Point (pI)

35.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	33 - 89	1.1e-33	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50410 AT5G66940
fragaria_vesca	FvH4_1g14790
malus_domestica	MD02G1161200.v1.1 MD15G1275300.v1.1
prunus_persica	Prupe.7G142500_v2.0.a1
pyrus_communis	pycom02g12720 pycom15g23830
rosa_chinensis	RchiOBHm_Chr2g0103751
rosa_laevigata	RLG00000017255
rosa_multiflora	Rmu_sc0001852.1_g000001
rosa_rugosa	Rorug02G0117100
rosa_samantha	Rh2AG166000 Rh2BG173300 Rh2CG172000 Rh2DG171500
rosa_wichuraiana	Rw2G013000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	111
AasI	GACNNNNNNGTC	1 cut(s)	236
Acc36I	ACCTGC	1 cut(s)	111
AccB1I	GGYRCC	2 cut(s)	218, 248
AccBSI	CCGCTC	1 cut(s)	545
AccII	CGCG	1 cut(s)	228
AclWI	GGATC	1 cut(s)	27
AcoI	YGGCCR	2 cut(s)	330, 692
AflIII	ACRYGT	1 cut(s)	612
AgsI	TTSAA	1 cut(s)	388
AjnI	CCWGG	5 cut(s)	66, 352, 463, 559, 715
AjuI	GAANNNNNNNTTGG	2 cut(s)	122, 154
AluBI	AGCT	3 cut(s)	435, 622, 677
AluI	AGCT	3 cut(s)	435, 622, 677
Alw21I	GWGCWC	1 cut(s)	102
AlwI	GGATC	1 cut(s)	27
Ama87I	CYCGRG	1 cut(s)	623
AoxI	GGCC	7 cut(s)	69, 78, 330, 461, 551, 591, 692
ApaI	GGGCCC	2 cut(s)	82, 595
ApeKI	GCWGC	4 cut(s)	25, 117, 432, 619
AspS9I	GGNCC	7 cut(s)	78, 79, 207, 461, 591, 592, 665
AsuC2I	CCSGG	1 cut(s)	16
AsuHPI	GGTGA	1 cut(s)	67
AvaI	CYCGRG	1 cut(s)	623
AvaII	GGWCC	2 cut(s)	207, 665
BaeGI	GKGCMC	3 cut(s)	82, 221, 595
BanI	GGYRCC	2 cut(s)	218, 248
BanII	GRGCYC	2 cut(s)	82, 595
Bbv12I	GWGCWC	1 cut(s)	102
BbvI	GCAGC	4 cut(s)	37, 104, 444, 631
BccI	CCATC	3 cut(s)	517, 559, 569
BciT130I	CCWGG	5 cut(s)	68, 354, 465, 561, 717
BcnI	CCSGG	1 cut(s)	16
BfuAI	ACCTGC	1 cut(s)	111
BglI	GCCNNNNNGGC	2 cut(s)	68, 77
Bme1390I	CCNGG	6 cut(s)	16, 68, 354, 465, 561, 717
Bme18I	GGWCC	2 cut(s)	207, 665
BmeT110I	CYCGRG	1 cut(s)	623
BmgT120I	GGNCC	7 cut(s)	78, 79, 207, 461, 591, 592, 665
BmrFI	CCNGG	6 cut(s)	16, 68, 354, 465, 561, 717
BmsI	GCATC	1 cut(s)	398
BpuMI	CCSGG	1 cut(s)	16
BsaJI	CCNNGG	8 cut(s)	15, 66, 72, 211, 352, 457, 560, 595
BsaWI	WCCGGW	1 cut(s)	45
BsaXI	ACNNNNNCTCC	4 cut(s)	149, 179, 564, 594
Bse1I	ACTGG	1 cut(s)	209
BseBI	CCWGG	5 cut(s)	68, 354, 465, 561, 717
BseDI	CCNNGG	8 cut(s)	15, 66, 72, 211, 352, 457, 560, 595
BseGI	GGATG	4 cut(s)	231, 413, 570, 609
BseMII	CTCAG	2 cut(s)	300, 669
BseNI	ACTGG	1 cut(s)	209
BseRI	GAGGAG	2 cut(s)	533, 585
BseSI	GKGCMC	3 cut(s)	82, 221, 595
BseXI	GCAGC	4 cut(s)	37, 104, 444, 631
BseYI	CCCAGC	1 cut(s)	168
Bsh1236I	CGCG	1 cut(s)	228
BshFI	GGCC	7 cut(s)	71, 80, 332, 463, 553, 593, 694
BshNI	GGYRCC	2 cut(s)	218, 248
BsiHKAI	GWGCWC	1 cut(s)	102
BsiHKCI	CYCGRG	1 cut(s)	623
BsiSI	CCGG	4 cut(s)	15, 46, 89, 695
BsnI	GGCC	7 cut(s)	71, 80, 332, 463, 553, 593, 694
BsoBI	CYCGRG	1 cut(s)	623
Bsp120I	GGGCCC	2 cut(s)	78, 591
Bsp1286I	GDGCHC	4 cut(s)	82, 102, 221, 595
Bsp143I	GATC	1 cut(s)	19
BspANI	GGCC	7 cut(s)	71, 80, 332, 463, 553, 593, 694
BspCNI	CTCAG	2 cut(s)	299, 670
BspFNI	CGCG	1 cut(s)	228
BspMI	ACCTGC	1 cut(s)	111
BspPI	GGATC	1 cut(s)	27
BspT107I	GGYRCC	2 cut(s)	218, 248
BsrBI	CCGCTC	1 cut(s)	545
BsrI	ACTGG	1 cut(s)	209
BssECI	CCNNGG	8 cut(s)	15, 66, 72, 211, 352, 457, 560, 595
BssMI	GATC	1 cut(s)	19
Bst2UI	CCWGG	5 cut(s)	68, 354, 465, 561, 717
Bst4CI	ACNGT	3 cut(s)	55, 375, 599
BstAPI	GCANNNNNTGC	1 cut(s)	192
BstC8I	GCNNGC	1 cut(s)	504
BstDEI	CTNAG	2 cut(s)	286, 678
BstDSI	CCRYGG	4 cut(s)	72, 211, 457, 595
BstF5I	GGATG	4 cut(s)	231, 413, 570, 609
BstFNI	CGCG	1 cut(s)	228
BstKTI	GATC	1 cut(s)	22
BstMBI	GATC	1 cut(s)	19
BstNI	CCWGG	5 cut(s)	68, 354, 465, 561, 717
BstNSI	RCATGY	1 cut(s)	616
BstSCI	CCNGG	6 cut(s)	14, 66, 352, 463, 559, 715
BstSLI	GKGCMC	3 cut(s)	82, 221, 595
BstUI	CGCG	1 cut(s)	228
BstV1I	GCAGC	4 cut(s)	37, 104, 444, 631
BstXI	CCANNNNNNTGG	1 cut(s)	464
BsuRI	GGCC	7 cut(s)	71, 80, 332, 463, 553, 593, 694
BtgI	CCRYGG	4 cut(s)	72, 211, 457, 595
BtsCI	GGATG	4 cut(s)	231, 413, 570, 609
BtsI	GCAGTG	1 cut(s)	433
BtsIMutI	CAGTG	1 cut(s)	433
BveI	ACCTGC	1 cut(s)	111
Cac8I	GCNNGC	1 cut(s)	504
Cfr13I	GGNCC	7 cut(s)	78, 79, 207, 461, 591, 592, 665
CviAII	CATG	2 cut(s)	397, 613
DdeI	CTNAG	2 cut(s)	286, 678
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
DrdI	GACNNNNNNGTC	1 cut(s)	236
DseDI	GACNNNNNNGTC	1 cut(s)	236
EaeI	YGGCCR	2 cut(s)	330, 692
Eco24I	GRGCYC	2 cut(s)	82, 595
Eco47I	GGWCC	2 cut(s)	207, 665
Eco88I	CYCGRG	1 cut(s)	623
EcoO109I	RGGNCCY	3 cut(s)	78, 79, 591
EcoRII	CCWGG	5 cut(s)	66, 352, 463, 559, 715
EcoT38I	GRGCYC	2 cut(s)	82, 595
FaeI	CATG	2 cut(s)	400, 616
FaiI	YATR	2 cut(s)	398, 614
FatI	CATG	2 cut(s)	396, 612
FauI	CCCGC	6 cut(s)	182, 260, 281, 479, 499, 577
FokI	GGATG	4 cut(s)	218, 420, 577, 616
FriOI	GRGCYC	2 cut(s)	82, 595
GsaI	CCCAGC	1 cut(s)	172
HaeIII	GGCC	7 cut(s)	71, 80, 332, 463, 553, 593, 694
HapII	CCGG	4 cut(s)	15, 46, 89, 695
Hin1II	CATG	2 cut(s)	400, 616
HinfI	GANTC	2 cut(s)	11, 122
HpaII	CCGG	4 cut(s)	15, 46, 89, 695
HphI	GGTGA	1 cut(s)	67
Hpy188I	TCNGA	4 cut(s)	10, 313, 362, 674
Hpy188III	TCNNGA	1 cut(s)	625
Hpy99I	CGWCG	3 cut(s)	10, 242, 674
HpyAV	CCTTC	1 cut(s)	382
HpyCH4III	ACNGT	3 cut(s)	55, 375, 599
HpyCH4V	TGCA	1 cut(s)	186
HpyF3I	CTNAG	2 cut(s)	286, 678
Hsp92II	CATG	2 cut(s)	400, 616
Kzo9I	GATC	1 cut(s)	19
LmnI	GCTCC	3 cut(s)	91, 362, 674
Lsp1109I	GCAGC	4 cut(s)	37, 104, 444, 631
LweI	GCATC	1 cut(s)	398
MalI	GATC	1 cut(s)	21
MbiI	CCGCTC	1 cut(s)	545
MboI	GATC	1 cut(s)	19
MhlI	GDGCHC	4 cut(s)	82, 102, 221, 595
MluCI	AATT	2 cut(s)	324, 705
MlyI	GAGTC	2 cut(s)	5, 116
MmeI	TCCRAC	3 cut(s)	340, 643, 652
MnlI	CCTC	7 cut(s)	42, 123, 233, 295, 511, 563, 628
MspI	CCGG	4 cut(s)	15, 46, 89, 695
MspR9I	CCNGG	6 cut(s)	16, 68, 354, 465, 561, 717
MvaI	CCWGG	5 cut(s)	68, 354, 465, 561, 717
MvnI	CGCG	1 cut(s)	228
NciI	CCSGG	1 cut(s)	16
NdeII	GATC	1 cut(s)	19
NlaIII	CATG	2 cut(s)	400, 616
NspI	RCATGY	1 cut(s)	616
PaeR7I	CTCGAG	1 cut(s)	623
PaqCI	CACCTGC	1 cut(s)	111
PciI	ACATGT	1 cut(s)	612
PfoI	TCCNGGA	1 cut(s)	715
PleI	GAGTC	2 cut(s)	5, 116
PpsI	GAGTC	2 cut(s)	5, 116
PscI	ACATGT	1 cut(s)	612
Psp6I	CCWGG	5 cut(s)	66, 352, 463, 559, 715
PspFI	CCCAGC	1 cut(s)	168
PspGI	CCWGG	5 cut(s)	66, 352, 463, 559, 715
PspOMI	GGGCCC	2 cut(s)	78, 591
PspPI	GGNCC	7 cut(s)	78, 79, 207, 461, 591, 592, 665
Sau3AI	GATC	1 cut(s)	19
Sau96I	GGNCC	7 cut(s)	78, 79, 207, 461, 591, 592, 665
SchI	GAGTC	2 cut(s)	5, 116
ScrFI	CCNGG	6 cut(s)	16, 68, 354, 465, 561, 717
SduI	GDGCHC	4 cut(s)	82, 102, 221, 595
SetI	ASST	5 cut(s)	105, 358, 437, 624, 679
SfaNI	GCATC	1 cut(s)	398
SfiI	GGCCNNNNNGGCC	1 cut(s)	77
Sfr274I	CTCGAG	1 cut(s)	623
SinI	GGWCC	2 cut(s)	207, 665
SlaI	CTCGAG	1 cut(s)	623
SmlI	CTYRAG	1 cut(s)	623
SmoI	CTYRAG	1 cut(s)	623
Sse9I	AATT	2 cut(s)	324, 705
StyD4I	CCNGG	6 cut(s)	14, 66, 352, 463, 559, 715
TaaI	ACNGT	3 cut(s)	55, 375, 599
TaqI	TCGA	1 cut(s)	624
TasI	AATT	2 cut(s)	324, 705
TauI	GCSGC	9 cut(s)	198, 201, 246, 249, 284, 368, 414, 417, 426
TscAI	CASTG	1 cut(s)	433
TseI	GCWGC	4 cut(s)	25, 117, 432, 619
TspDTI	ATGAA	1 cut(s)	623
TspGWI	ACGGA	1 cut(s)	645
TspRI	CASTG	1 cut(s)	433
VpaK11BI	GGWCC	2 cut(s)	207, 665
XceI	RCATGY	1 cut(s)	616
XcmI	CCANNNNNNNNNTGG	1 cut(s)	464
XhoI	CTCGAG	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.