Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001852.1

Orthogroup ID

OG0013962

Physical Location & Seq

Genomic Coordinates Reverse (-)

415 .. 1614

Gene Structure 1200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001852.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

atgccgtcggactcgggcgacccgaacaaccggagacccaccaaggcgcagagtctgggagctccgccgccggagcaggagcacctcccttgtccccgctgcgagtccaccaacaccaagttctgctactacaacaactacaacttctctcagcctcgtcacttctgcaagtcctgccgccgctactggacccatggtgggaccctccgtgacatccccgtcggcggcggcagccgcaagaacgccaagcgctcccgcacctcctccactggttccatggtctcttctgcatctgatcacgccttgccggccaccccggttttcgtgccggtctcggctggacaaggcggcgccgatgccgtcggactcgggcgacccgaacaaccggagacccaccattacaaattactacaacaacactcgaacgtcctaataggaggaagtcaccatagtccccgccgctactggacccatggtgggaccctccgtgacatccccgtcggcggcggcagccgcaagaacgccaagcgctcccgcacctcctccacgggttccatggtctcttctgcatctgatcacgccttgccggccaccccggttttcgtgccggtctcggctggacaaggcggggcgggtggcggggcggggcagttcggcggttgcggtgtgaaggggaatgtgagtaatggagggagctttacttctctgctcaacactcagcccgggtttttggcgctgggaggatttgggcttgggcttgcgactgggtttgaggagatgggctttgggttcgggagagcgatgtggccttttcccggggtgggttcggatggtggtgctggaatcggggcgaacggcgtgtcgcatgggatgatgaacacgtggcagttcgagaatggcgagactggtgggcttgttaacgttggtcttggtggtggtggagagttctgttcttggccagagctggcaatttctactcctggtaatggtctcaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0042545 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0045787 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051726 GO:0060255 GO:0065007 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

332

Amino Acids

34.27

Weight (kDa)

9.37

Isoelectric Point (pI)

46.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50410 AT5G66940
fragaria_vesca	FvH4_1g14790
malus_domestica	MD02G1161200.v1.1 MD15G1275300.v1.1
prunus_persica	Prupe.7G142500_v2.0.a1
pyrus_communis	pycom02g12720 pycom15g23830
rosa_chinensis	RchiOBHm_Chr2g0103751
rosa_laevigata	RLG00000017255
rosa_multiflora	Rmu_sc0001852.1_g000001
rosa_rugosa	Rorug02G0117100
rosa_samantha	Rh2AG166000 Rh2BG173300 Rh2CG172000 Rh2DG171500
rosa_wichuraiana	Rw2G013000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	218, 497
AccB1I	GGYRCC	1 cut(s)	350
AclI	AACGTT	1 cut(s)	921
AcoI	YGGCCR	3 cut(s)	309, 588, 956
AcvI	CACGTG	1 cut(s)	882
AcyI	GRCGYC	1 cut(s)	351
AfeI	AGCGCT	2 cut(s)	251, 530
AfiI	CCNNNNNNNGG	7 cut(s)	198, 224, 477, 503, 815, 821, 986
AflIII	ACRYGT	1 cut(s)	879
AjnI	CCWGG	1 cut(s)	979
AjuI	GAANNNNNNNTTGG	2 cut(s)	104, 136
AluBI	AGCT	3 cut(s)	62, 696, 964
AluI	AGCT	3 cut(s)	62, 696, 964
Alw21I	GWGCWC	2 cut(s)	64, 84
Alw26I	GTCTC	8 cut(s)	28, 286, 337, 383, 565, 616, 896, 995
AlwNI	CAGNNNCTG	1 cut(s)	55
Ama87I	CYCGRG	4 cut(s)	13, 368, 722, 815
Aor51HI	AGCGCT	2 cut(s)	251, 530
AoxI	GGCC	4 cut(s)	309, 588, 806, 956
ApeKI	GCWGC	3 cut(s)	99, 231, 510
ArsI	GACNNNNNNTTYG	2 cut(s)	845, 877
AspLEI	GCGC	5 cut(s)	49, 252, 353, 531, 736
AspS9I	GGNCC	4 cut(s)	189, 201, 468, 480
AsuC2I	CCSGG	6 cut(s)	317, 596, 723, 724, 816, 817
AsuHPI	GGTGA	1 cut(s)	437
AvaI	CYCGRG	4 cut(s)	13, 368, 722, 815
AvaII	GGWCC	4 cut(s)	189, 201, 468, 480
BalI	TGGCCA	1 cut(s)	958
BanI	GGYRCC	1 cut(s)	350
BanII	GRGCYC	1 cut(s)	64
BbrPI	CACGTG	1 cut(s)	882
Bbv12I	GWGCWC	2 cut(s)	64, 84
BbvI	GCAGC	3 cut(s)	86, 243, 522
BccI	CCATC	2 cut(s)	772, 824
BceAI	ACGGC	2 cut(s)	344, 871
BciT130I	CCWGG	1 cut(s)	981
BclI	TGATCA	2 cut(s)	295, 574
BcnI	CCSGG	6 cut(s)	317, 596, 723, 724, 816, 817
BcoDI	GTCTC	8 cut(s)	28, 286, 337, 383, 565, 616, 896, 995
BfoI	RGCGCY	4 cut(s)	253, 354, 532, 737
BglI	GCCNNNNNGGC	2 cut(s)	308, 587
Bme1390I	CCNGG	7 cut(s)	317, 596, 723, 724, 816, 817, 981
Bme18I	GGWCC	4 cut(s)	189, 201, 468, 480
BmeT110I	CYCGRG	4 cut(s)	13, 368, 722, 815
BmgT120I	GGNCC	4 cut(s)	189, 201, 468, 480
BmiI	GGNNCC	9 cut(s)	191, 202, 203, 274, 352, 470, 481, 482, 553
BmrFI	CCNGG	7 cut(s)	317, 596, 723, 724, 816, 817, 981
BmrI	ACTGGG	1 cut(s)	774
BmsI	GCATC	3 cut(s)	299, 346, 578
BmuI	ACTGGG	1 cut(s)	774
BpuEI	CTTGAG	1 cut(s)	977
BpuMI	CCSGG	6 cut(s)	317, 596, 723, 724, 816, 817
BsaAI	YACGTR	1 cut(s)	882
BsaHI	GRCGYC	1 cut(s)	351
BsaI	GGTCTC	7 cut(s)	28, 286, 337, 383, 565, 616, 995
BsaWI	WCCGGW	2 cut(s)	30, 385
Bsc4I	CCNNNNNNNGG	7 cut(s)	198, 224, 477, 503, 815, 821, 986
Bse118I	RCCGGY	4 cut(s)	307, 328, 586, 607
Bse1I	ACTGG	5 cut(s)	191, 274, 470, 769, 910
BseBI	CCWGG	1 cut(s)	981
BseGI	GGATG	4 cut(s)	213, 492, 835, 876
BseLI	CCNNNNNNNGG	7 cut(s)	198, 224, 477, 503, 815, 821, 986
BseMII	CTCAG	2 cut(s)	164, 731
BseNI	ACTGG	5 cut(s)	191, 274, 470, 769, 910
BseRI	GAGGAG	3 cut(s)	253, 532, 788
BseXI	GCAGC	3 cut(s)	86, 243, 522
BseYI	CCCAGC	1 cut(s)	736
BshFI	GGCC	4 cut(s)	311, 590, 808, 958
BshNI	GGYRCC	1 cut(s)	350
BsiHKAI	GWGCWC	2 cut(s)	64, 84
BsiHKCI	CYCGRG	4 cut(s)	13, 368, 722, 815
BslFI	GGGAC	4 cut(s)	78, 214, 438, 493
BslI	CCNNNNNNNGG	7 cut(s)	198, 224, 477, 503, 815, 821, 986
BsmAI	GTCTC	8 cut(s)	28, 286, 337, 383, 565, 616, 896, 995
BsmFI	GGGAC	4 cut(s)	78, 214, 438, 493
BsnI	GGCC	4 cut(s)	311, 590, 808, 958
Bso31I	GGTCTC	7 cut(s)	28, 286, 337, 383, 565, 616, 995
BsoBI	CYCGRG	4 cut(s)	13, 368, 722, 815
Bsp1286I	GDGCHC	2 cut(s)	64, 84
Bsp143I	GATC	2 cut(s)	295, 574
Bsp19I	CCATGG	4 cut(s)	193, 276, 472, 555
BspANI	GGCC	4 cut(s)	311, 590, 808, 958
BspCNI	CTCAG	2 cut(s)	163, 730
BspLI	GGNNCC	9 cut(s)	191, 202, 203, 274, 352, 470, 481, 482, 553
BspT107I	GGYRCC	1 cut(s)	350
BspTNI	GGTCTC	7 cut(s)	28, 286, 337, 383, 565, 616, 995
BsrFI	RCCGGY	4 cut(s)	307, 328, 586, 607
BsrI	ACTGG	5 cut(s)	191, 274, 470, 769, 910
BssAI	RCCGGY	4 cut(s)	307, 328, 586, 607
BssMI	GATC	2 cut(s)	295, 574
BssNI	GRCGYC	1 cut(s)	351
BssT1I	CCWWGG	5 cut(s)	42, 193, 276, 472, 555
Bst2UI	CCWGG	1 cut(s)	981
Bst6I	CTCTTC	2 cut(s)	289, 568
BstACI	GRCGYC	1 cut(s)	351
BstAPI	GCANNNNNTGC	1 cut(s)	174
BstBAI	YACGTR	1 cut(s)	882
BstC8I	GCNNGC	4 cut(s)	309, 588, 759, 966
BstDEI	CTNAG	2 cut(s)	150, 717
BstDSI	CCRYGG	5 cut(s)	193, 276, 472, 546, 555
BstF5I	GGATG	4 cut(s)	213, 492, 835, 876
BstH2I	RGCGCY	4 cut(s)	253, 354, 532, 737
BstHHI	GCGC	5 cut(s)	49, 252, 353, 531, 736
BstKTI	GATC	2 cut(s)	298, 577
BstMAI	GTCTC	8 cut(s)	28, 286, 337, 383, 565, 616, 896, 995
BstMBI	GATC	2 cut(s)	295, 574
BstMWI	GCNNNNNNNGC	8 cut(s)	73, 174, 231, 234, 308, 510, 513, 587
BstNI	CCWGG	1 cut(s)	981
BstSCI	CCNGG	7 cut(s)	315, 594, 721, 722, 814, 815, 979
BstV1I	GCAGC	3 cut(s)	86, 243, 522
BsuRI	GGCC	4 cut(s)	311, 590, 808, 958
BtgI	CCRYGG	5 cut(s)	193, 276, 472, 546, 555
BtgZI	GCGATG	1 cut(s)	815
BtsCI	GGATG	4 cut(s)	213, 492, 835, 876
BtsIMutI	CAGTG	1 cut(s)	267
Cac8I	GCNNGC	4 cut(s)	309, 588, 759, 966
CaiI	CAGNNNCTG	1 cut(s)	55
CfoI	GCGC	5 cut(s)	49, 252, 353, 531, 736
Cfr10I	RCCGGY	4 cut(s)	307, 328, 586, 607
Cfr13I	GGNCC	4 cut(s)	189, 201, 468, 480
Cfr9I	CCCGGG	2 cut(s)	722, 815
CviAII	CATG	5 cut(s)	194, 277, 473, 556, 866
DdeI	CTNAG	2 cut(s)	150, 717
DinI	GGCGCC	1 cut(s)	352
DpnI	GATC	2 cut(s)	297, 576
DpnII	GATC	2 cut(s)	295, 574
DrdI	GACNNNNNNGTC	2 cut(s)	218, 497
DseDI	GACNNNNNNGTC	2 cut(s)	218, 497
EaeI	YGGCCR	3 cut(s)	309, 588, 956
Eam1104I	CTCTTC	2 cut(s)	289, 568
EarI	CTCTTC	2 cut(s)	289, 568
EciI	GGCGGA	1 cut(s)	54
Ecl136II	GAGCTC	1 cut(s)	62
Eco130I	CCWWGG	5 cut(s)	42, 193, 276, 472, 555
Eco24I	GRGCYC	1 cut(s)	64
Eco31I	GGTCTC	7 cut(s)	28, 286, 337, 383, 565, 616, 995
Eco47I	GGWCC	4 cut(s)	189, 201, 468, 480
Eco47III	AGCGCT	2 cut(s)	251, 530
Eco53kI	GAGCTC	1 cut(s)	62
Eco72I	CACGTG	1 cut(s)	882
Eco88I	CYCGRG	4 cut(s)	13, 368, 722, 815
EcoICRI	GAGCTC	1 cut(s)	62
EcoO109I	RGGNCCY	2 cut(s)	201, 480
EcoRII	CCWGG	1 cut(s)	979
EcoT14I	CCWWGG	5 cut(s)	42, 193, 276, 472, 555
EcoT38I	GRGCYC	1 cut(s)	64
EgeI	GGCGCC	1 cut(s)	352
EheI	GGCGCC	1 cut(s)	352
ErhI	CCWWGG	5 cut(s)	42, 193, 276, 472, 555
FaeI	CATG	5 cut(s)	197, 280, 476, 559, 869
FaiI	YATR	6 cut(s)	195, 278, 450, 474, 557, 867
FaqI	GGGAC	4 cut(s)	78, 214, 438, 493
FatI	CATG	5 cut(s)	193, 276, 472, 555, 865
FauI	CCCGC	8 cut(s)	104, 263, 464, 542, 620, 625, 632, 637
FbaI	TGATCA	2 cut(s)	295, 574
FokI	GGATG	4 cut(s)	200, 479, 842, 883
FriOI	GRGCYC	1 cut(s)	64
GlaI	GCGC	5 cut(s)	48, 251, 352, 530, 735
GsaI	CCCAGC	1 cut(s)	740
HaeII	RGCGCY	4 cut(s)	253, 354, 532, 737
HaeIII	GGCC	4 cut(s)	311, 590, 808, 958
HhaI	GCGC	5 cut(s)	49, 252, 353, 531, 736
Hin1I	GRCGYC	1 cut(s)	351
Hin1II	CATG	5 cut(s)	197, 280, 476, 559, 869
Hin6I	GCGC	5 cut(s)	47, 250, 351, 529, 734
HinP1I	GCGC	5 cut(s)	47, 250, 351, 529, 734
HincII	GTYRAC	1 cut(s)	919
HindII	GTYRAC	1 cut(s)	919
HinfI	GANTC	5 cut(s)	11, 52, 104, 366, 843
HpaI	GTTAAC	1 cut(s)	919
HphI	GGTGA	1 cut(s)	437
Hpy166II	GTNNAC	2 cut(s)	108, 919
Hpy188I	TCNGA	5 cut(s)	10, 295, 365, 574, 829
Hpy188III	TCNNGA	2 cut(s)	793, 892
Hpy8I	GTNNAC	2 cut(s)	108, 919
Hpy99I	CGWCG	4 cut(s)	10, 224, 365, 503
HpyAV	CCTTC	1 cut(s)	664
HpyCH4IV	ACGT	3 cut(s)	426, 881, 921
HpyCH4V	TGCA	3 cut(s)	168, 290, 569
HpyF10VI	GCNNNNNNNGC	8 cut(s)	73, 174, 231, 234, 308, 510, 513, 587
HpyF3I	CTNAG	2 cut(s)	150, 717
HpySE526I	ACGT	3 cut(s)	426, 881, 921
Hsp92I	GRCGYC	1 cut(s)	351
Hsp92II	CATG	5 cut(s)	197, 280, 476, 559, 869
HspAI	GCGC	5 cut(s)	47, 250, 351, 529, 734
KasI	GGCGCC	1 cut(s)	350
KflI	GGGWCCC	2 cut(s)	201, 480
KroI	GCCGGC	2 cut(s)	307, 586
KroNI	GCCGGC	2 cut(s)	309, 588
Ksp22I	TGATCA	2 cut(s)	295, 574
KspAI	GTTAAC	1 cut(s)	919
Kzo9I	GATC	2 cut(s)	295, 574
LmnI	GCTCC	7 cut(s)	59, 67, 73, 79, 257, 536, 693
Lsp1109I	GCAGC	3 cut(s)	86, 243, 522
LweI	GCATC	3 cut(s)	299, 346, 578
MaeII	ACGT	3 cut(s)	426, 881, 921
MaeIII	GTNAC	4 cut(s)	158, 209, 443, 488
MalI	GATC	2 cut(s)	297, 576
MboI	GATC	2 cut(s)	295, 574
MboII	GAAGA	2 cut(s)	276, 555
MhlI	GDGCHC	2 cut(s)	64, 84
MlsI	TGGCCA	1 cut(s)	958
MluCI	AATT	2 cut(s)	404, 969
MluNI	TGGCCA	1 cut(s)	958
Mly113I	GGCGCC	1 cut(s)	351
MlyI	GAGTC	4 cut(s)	5, 61, 113, 360
MmeI	TCCRAC	1 cut(s)	343
Mox20I	TGGCCA	1 cut(s)	958
MroNI	GCCGGC	2 cut(s)	307, 586
MscI	TGGCCA	1 cut(s)	958
MseI	TTAA	1 cut(s)	918
Msp20I	TGGCCA	1 cut(s)	958
MspA1I	CMGCKG	1 cut(s)	99
MspR9I	CCNGG	7 cut(s)	317, 596, 723, 724, 816, 817, 981
MvaI	CCWGG	1 cut(s)	981
MwoI	GCNNNNNNNGC	8 cut(s)	73, 174, 231, 234, 308, 510, 513, 587
NaeI	GCCGGC	2 cut(s)	309, 588
NarI	GGCGCC	1 cut(s)	351
NciI	CCSGG	6 cut(s)	317, 596, 723, 724, 816, 817
NcoI	CCATGG	4 cut(s)	193, 276, 472, 555
NdeII	GATC	2 cut(s)	295, 574
NgoMIV	GCCGGC	2 cut(s)	307, 586
NlaIII	CATG	5 cut(s)	197, 280, 476, 559, 869
NlaIV	GGNNCC	9 cut(s)	191, 202, 203, 274, 352, 470, 481, 482, 553
NmeAIII	GCCGAG	2 cut(s)	314, 593
NmuCI	GTSAC	4 cut(s)	158, 209, 443, 488
PcsI	WCGNNNNNNNCGW	3 cut(s)	20, 375, 897
PdiI	GCCGGC	2 cut(s)	309, 588
PfeI	GAWTC	1 cut(s)	843
PleI	GAGTC	4 cut(s)	5, 60, 112, 360
PluTI	GGCGCC	1 cut(s)	354
PmaCI	CACGTG	1 cut(s)	882
PmlI	CACGTG	1 cut(s)	882
PpsI	GAGTC	4 cut(s)	5, 60, 112, 360
Ppu21I	YACGTR	1 cut(s)	882
PpuMI	RGGWCCY	2 cut(s)	201, 480
Psp124BI	GAGCTC	1 cut(s)	64
Psp1406I	AACGTT	1 cut(s)	921
Psp5II	RGGWCCY	2 cut(s)	201, 480
Psp6I	CCWGG	1 cut(s)	979
PspCI	CACGTG	1 cut(s)	882
PspFI	CCCAGC	1 cut(s)	736
PspGI	CCWGG	1 cut(s)	979
PspN4I	GGNNCC	9 cut(s)	191, 202, 203, 274, 352, 470, 481, 482, 553
PspPI	GGNCC	4 cut(s)	189, 201, 468, 480
PspPPI	RGGWCCY	2 cut(s)	201, 480
PstNI	CAGNNNCTG	1 cut(s)	55
SacI	GAGCTC	1 cut(s)	64
SaqAI	TTAA	1 cut(s)	918
Sau3AI	GATC	2 cut(s)	295, 574
Sau96I	GGNCC	4 cut(s)	189, 201, 468, 480
SchI	GAGTC	4 cut(s)	5, 61, 113, 360
ScrFI	CCNGG	7 cut(s)	317, 596, 723, 724, 816, 817, 981
SduI	GDGCHC	2 cut(s)	64, 84
SetI	ASST	9 cut(s)	64, 87, 263, 429, 542, 698, 884, 924, 966
SfaNI	GCATC	3 cut(s)	299, 346, 578
SfoI	GGCGCC	1 cut(s)	352
SinI	GGWCC	4 cut(s)	189, 201, 468, 480
SmaI	CCCGGG	2 cut(s)	724, 817
SmlI	CTYRAG	1 cut(s)	992
SmoI	CTYRAG	1 cut(s)	992
Sse9I	AATT	2 cut(s)	404, 969
SspDI	GGCGCC	1 cut(s)	350
SstI	GAGCTC	1 cut(s)	64
StyD4I	CCNGG	7 cut(s)	315, 594, 721, 722, 814, 815, 979
StyI	CCWWGG	5 cut(s)	42, 193, 276, 472, 555
TaiI	ACGT	3 cut(s)	429, 884, 924
TaqI	TCGA	2 cut(s)	422, 891
TasI	AATT	2 cut(s)	404, 969
TfiI	GAWTC	1 cut(s)	843
Tru1I	TTAA	1 cut(s)	918
Tru9I	TTAA	1 cut(s)	918
TscAI	CASTG	1 cut(s)	274
TseFI	GTSAC	4 cut(s)	158, 209, 443, 488
TseI	GCWGC	3 cut(s)	99, 231, 510
Tsp45I	GTSAC	4 cut(s)	158, 209, 443, 488
TspDTI	ATGAA	1 cut(s)	890
TspGWI	ACGGA	2 cut(s)	197, 476
TspMI	CCCGGG	2 cut(s)	722, 815
TspRI	CASTG	1 cut(s)	274
VpaK11BI	GGWCC	4 cut(s)	189, 201, 468, 480
XcmI	CCANNNNNNNNNTGG	2 cut(s)	274, 553
XmaI	CCCGGG	2 cut(s)	722, 815

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.