Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0013962

Physical Location & Seq

Genomic Coordinates Forward (+)

8269814 .. 8271229

Gene Structure 1416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g14790.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGCCGTCGGACTCAGGCGACTCAAACAACCGGAAACAACCCACCAAGGCGCAGAGCAGCCTGGGAGCTCCACCGCCGGAGCAGGAGCACCTGCCGTGTCCTCGCTGCGAGTCCACCAACACCAAGTTCTGCTACTACAACAACTACAACTTCTCTCAGCCTCGTCACTTCTGCAAGTCCTGCCGCCGCTACTGGACCCACGGTGGGACCCTCCGTGACATCCCCGTCGGCGGCGGCAGCCGCAAGAACGCCAAGCGGTCTCGGACGTGCTCCAGCAATGGTTCCATGGTCTCTGCTGGGTCTGATCACGCCTTGCCCGCCACCCCGGTTTTCATGCCGGTGTCTGCGGGACAAGGCGGCTTCGGCGGGGGAGGGGCGGTGCAGTTCGGCGGCTGCGGTGGAGGACTGAAAGGTAATGTGAGTAATGGAGGGAGCTTTACTTCTCTGCTCAACACTCAGCCAGGGTTTTTGGCTTTGGGGGGATTTGGGCTTGGGCTTACTACTGGGTTTGAGGAGATGGGCTTCGGGTTCGGTAGAGCTGTGTGGCCTTTTTCCGGGATGGGATCCGACAGTGGTGCCGGGATCGGGGGTAATGGTGTTGCCCATGGGATGATGAACGCGTGGCAGTTTGAGAATGGTGAGGCTGGAGGGGTTGTGAATGTTGGTCTTGGTGGTGGTGGTGGAGAGTTCTGTTCTTGGCCAGAGCTGGCAATTTCTACTCCTGGAAATGGTCTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0042545 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0045787 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051726 GO:0060255 GO:0065007 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

247

Amino Acids

25.13

Weight (kDa)

8.66

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	29 - 85	1.1e-33	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50410 AT5G66940
fragaria_vesca	FvH4_1g14790
malus_domestica	MD02G1161200.v1.1 MD15G1275300.v1.1
prunus_persica	Prupe.7G142500_v2.0.a1
pyrus_communis	pycom02g12720 pycom15g23830
rosa_chinensis	RchiOBHm_Chr2g0103751
rosa_laevigata	RLG00000017255
rosa_multiflora	Rmu_sc0001852.1_g000001
rosa_rugosa	Rorug02G0117100
rosa_samantha	Rh2AG166000 Rh2BG173300 Rh2CG172000 Rh2DG171500
rosa_wichuraiana	Rw2G013000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	99
AasI	GACNNNNNNGTC	1 cut(s)	224
Acc36I	ACCTGC	1 cut(s)	99
AccB1I	GGYRCC	1 cut(s)	575
AccII	CGCG	1 cut(s)	620
AclWI	GGATC	3 cut(s)	558, 571, 590
AcoI	YGGCCR	1 cut(s)	698
AfiI	CCNNNNNNNGG	5 cut(s)	204, 230, 554, 585, 728
AflIII	ACRYGT	1 cut(s)	618
AjiI	CACGTC	1 cut(s)	267
AjnI	CCWGG	3 cut(s)	60, 460, 721
AjuI	GAANNNNNNNTTGG	2 cut(s)	110, 142
AluBI	AGCT	4 cut(s)	68, 435, 539, 706
AluI	AGCT	4 cut(s)	68, 435, 539, 706
Alw21I	GWGCWC	3 cut(s)	70, 90, 272
Alw26I	GTCTC	3 cut(s)	264, 295, 737
AlwI	GGATC	3 cut(s)	558, 571, 590
AoxI	GGCC	2 cut(s)	545, 698
ApeKI	GCWGC	4 cut(s)	57, 105, 237, 393
AspLEI	GCGC	1 cut(s)	52
AspS9I	GGNCC	2 cut(s)	195, 207
AsuC2I	CCSGG	3 cut(s)	326, 556, 580
AsuHPI	GGTGA	1 cut(s)	650
AvaII	GGWCC	2 cut(s)	195, 207
BalI	TGGCCA	1 cut(s)	700
BamHI	GGATCC	1 cut(s)	563
BanI	GGYRCC	1 cut(s)	575
BanII	GRGCYC	1 cut(s)	70
Bbv12I	GWGCWC	3 cut(s)	70, 90, 272
BbvI	GCAGC	4 cut(s)	69, 92, 249, 380
BccI	CCATC	2 cut(s)	511, 553
BceAI	ACGGC	1 cut(s)	79
BcgI	CGANNNNNNTGC	2 cut(s)	557, 591
BciT130I	CCWGG	3 cut(s)	62, 462, 723
BclI	TGATCA	1 cut(s)	304
BcnI	CCSGG	3 cut(s)	326, 556, 580
BcoDI	GTCTC	3 cut(s)	264, 295, 737
BfuAI	ACCTGC	1 cut(s)	99
Bme1390I	CCNGG	6 cut(s)	62, 326, 462, 556, 580, 723
Bme18I	GGWCC	2 cut(s)	195, 207
BmgBI	CACGTC	1 cut(s)	267
BmgT120I	GGNCC	2 cut(s)	195, 207
BmiI	GGNNCC	6 cut(s)	197, 208, 209, 283, 565, 577
BmrFI	CCNGG	6 cut(s)	62, 326, 462, 556, 580, 723
BmrI	ACTGGG	1 cut(s)	513
BmuI	ACTGGG	1 cut(s)	513
BpmI	CTGGAG	2 cut(s)	256, 666
BpuEI	CTTGAG	1 cut(s)	719
BpuMI	CCSGG	3 cut(s)	326, 556, 580
BsaI	GGTCTC	3 cut(s)	264, 295, 737
BsaJI	CCNNGG	7 cut(s)	45, 61, 199, 285, 324, 461, 604
BsaWI	WCCGGW	1 cut(s)	30
BsaXI	ACNNNNNCTCC	4 cut(s)	363, 393, 639, 669
Bsc4I	CCNNNNNNNGG	5 cut(s)	204, 230, 554, 585, 728
Bse118I	RCCGGY	1 cut(s)	337
Bse1I	ACTGG	2 cut(s)	197, 508
Bse3DI	GCAATG	1 cut(s)	283
BseBI	CCWGG	3 cut(s)	62, 462, 723
BseDI	CCNNGG	7 cut(s)	45, 61, 199, 285, 324, 461, 604
BseGI	GGATG	3 cut(s)	219, 564, 615
BseLI	CCNNNNNNNGG	5 cut(s)	204, 230, 554, 585, 728
BseMI	GCAATG	1 cut(s)	283
BseMII	CTCAG	3 cut(s)	27, 170, 470
BseNI	ACTGG	2 cut(s)	197, 508
BseRI	GAGGAG	1 cut(s)	527
BseXI	GCAGC	4 cut(s)	69, 92, 249, 380
BseYI	CCCAGC	1 cut(s)	296
BsgI	GTGCAG	1 cut(s)	401
Bsh1236I	CGCG	1 cut(s)	620
BshFI	GGCC	2 cut(s)	547, 700
BshNI	GGYRCC	1 cut(s)	575
BsiHKAI	GWGCWC	3 cut(s)	70, 90, 272
BsiSI	CCGG	6 cut(s)	31, 77, 326, 338, 555, 579
BslFI	GGGAC	2 cut(s)	220, 363
BslI	CCNNNNNNNGG	5 cut(s)	204, 230, 554, 585, 728
BsmAI	GTCTC	3 cut(s)	264, 295, 737
BsmFI	GGGAC	2 cut(s)	220, 363
BsnI	GGCC	2 cut(s)	547, 700
Bso31I	GGTCTC	3 cut(s)	264, 295, 737
Bsp1286I	GDGCHC	3 cut(s)	70, 90, 272
Bsp143I	GATC	3 cut(s)	304, 563, 582
Bsp19I	CCATGG	2 cut(s)	285, 604
BspANI	GGCC	2 cut(s)	547, 700
BspCNI	CTCAG	3 cut(s)	26, 169, 469
BspFNI	CGCG	1 cut(s)	620
BspLI	GGNNCC	6 cut(s)	197, 208, 209, 283, 565, 577
BspMI	ACCTGC	1 cut(s)	99
BspPI	GGATC	3 cut(s)	558, 571, 590
BspT107I	GGYRCC	1 cut(s)	575
BspTNI	GGTCTC	3 cut(s)	264, 295, 737
BsrDI	GCAATG	1 cut(s)	283
BsrFI	RCCGGY	1 cut(s)	337
BsrI	ACTGG	2 cut(s)	197, 508
BssAI	RCCGGY	1 cut(s)	337
BssECI	CCNNGG	7 cut(s)	45, 61, 199, 285, 324, 461, 604
BssMI	GATC	3 cut(s)	304, 563, 582
BssT1I	CCWWGG	3 cut(s)	45, 285, 604
Bst2UI	CCWGG	3 cut(s)	62, 462, 723
Bst4CI	ACNGT	2 cut(s)	203, 572
BstAPI	GCANNNNNTGC	1 cut(s)	180
BstC8I	GCNNGC	2 cut(s)	318, 708
BstDEI	CTNAG	3 cut(s)	13, 156, 456
BstDSI	CCRYGG	3 cut(s)	199, 285, 604
BstF5I	GGATG	3 cut(s)	219, 564, 615
BstFNI	CGCG	1 cut(s)	620
BstHHI	GCGC	1 cut(s)	52
BstKTI	GATC	3 cut(s)	307, 566, 585
BstMAI	GTCTC	3 cut(s)	264, 295, 737
BstMBI	GATC	3 cut(s)	304, 563, 582
BstMWI	GCNNNNNNNGC	5 cut(s)	180, 237, 240, 317, 363
BstNI	CCWGG	3 cut(s)	62, 462, 723
BstSCI	CCNGG	6 cut(s)	60, 324, 460, 554, 578, 721
BstUI	CGCG	1 cut(s)	620
BstV1I	GCAGC	4 cut(s)	69, 92, 249, 380
BstX2I	RGATCY	1 cut(s)	563
BstYI	RGATCY	1 cut(s)	563
BsuRI	GGCC	2 cut(s)	547, 700
BtgI	CCRYGG	3 cut(s)	199, 285, 604
BtrI	CACGTC	1 cut(s)	267
BtsCI	GGATG	3 cut(s)	219, 564, 615
BtsIMutI	CAGTG	1 cut(s)	577
BveI	ACCTGC	1 cut(s)	99
Cac8I	GCNNGC	2 cut(s)	318, 708
CfoI	GCGC	1 cut(s)	52
Cfr10I	RCCGGY	1 cut(s)	337
Cfr13I	GGNCC	2 cut(s)	195, 207
CviAII	CATG	3 cut(s)	286, 334, 605
DdeI	CTNAG	3 cut(s)	13, 156, 456
DpnI	GATC	3 cut(s)	306, 565, 584
DpnII	GATC	3 cut(s)	304, 563, 582
DrdI	GACNNNNNNGTC	1 cut(s)	224
DseDI	GACNNNNNNGTC	1 cut(s)	224
EaeI	YGGCCR	1 cut(s)	698
Ecl136II	GAGCTC	1 cut(s)	68
Eco130I	CCWWGG	3 cut(s)	45, 285, 604
Eco24I	GRGCYC	1 cut(s)	70
Eco31I	GGTCTC	3 cut(s)	264, 295, 737
Eco47I	GGWCC	2 cut(s)	195, 207
Eco53kI	GAGCTC	1 cut(s)	68
EcoICRI	GAGCTC	1 cut(s)	68
EcoO109I	RGGNCCY	1 cut(s)	207
EcoRII	CCWGG	3 cut(s)	60, 460, 721
EcoT14I	CCWWGG	3 cut(s)	45, 285, 604
EcoT38I	GRGCYC	1 cut(s)	70
ErhI	CCWWGG	3 cut(s)	45, 285, 604
FaeI	CATG	3 cut(s)	289, 337, 608
FaiI	YATR	3 cut(s)	287, 335, 606
FaqI	GGGAC	2 cut(s)	220, 363
FatI	CATG	3 cut(s)	285, 333, 604
FauI	CCCGC	3 cut(s)	325, 340, 359
FbaI	TGATCA	1 cut(s)	304
FokI	GGATG	3 cut(s)	206, 571, 622
FriOI	GRGCYC	1 cut(s)	70
GlaI	GCGC	1 cut(s)	51
GsaI	CCCAGC	1 cut(s)	300
GsuI	CTGGAG	2 cut(s)	256, 666
HaeIII	GGCC	2 cut(s)	547, 700
HapII	CCGG	6 cut(s)	31, 77, 326, 338, 555, 579
HhaI	GCGC	1 cut(s)	52
Hin1II	CATG	3 cut(s)	289, 337, 608
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
HinfI	GANTC	3 cut(s)	11, 20, 110
HpaII	CCGG	6 cut(s)	31, 77, 326, 338, 555, 579
HphI	GGTGA	1 cut(s)	650
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188I	TCNGA	4 cut(s)	10, 264, 304, 568
Hpy8I	GTNNAC	1 cut(s)	114
Hpy99I	CGWCG	2 cut(s)	10, 230
HpyCH4III	ACNGT	2 cut(s)	203, 572
HpyCH4IV	ACGT	1 cut(s)	266
HpyCH4V	TGCA	2 cut(s)	174, 382
HpyF10VI	GCNNNNNNNGC	5 cut(s)	180, 237, 240, 317, 363
HpyF3I	CTNAG	3 cut(s)	13, 156, 456
HpySE526I	ACGT	1 cut(s)	266
Hsp92II	CATG	3 cut(s)	289, 337, 608
HspAI	GCGC	1 cut(s)	50
KflI	GGGWCCC	1 cut(s)	207
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	3 cut(s)	304, 563, 582
LmnI	GCTCC	6 cut(s)	65, 73, 79, 85, 275, 432
Lsp1109I	GCAGC	4 cut(s)	69, 92, 249, 380
MaeII	ACGT	1 cut(s)	266
MaeIII	GTNAC	2 cut(s)	164, 215
MalI	GATC	3 cut(s)	306, 565, 584
MboI	GATC	3 cut(s)	304, 563, 582
MflI	RGATCY	1 cut(s)	563
MhlI	GDGCHC	3 cut(s)	70, 90, 272
MlsI	TGGCCA	1 cut(s)	700
MluCI	AATT	1 cut(s)	711
MluI	ACGCGT	1 cut(s)	618
MluNI	TGGCCA	1 cut(s)	700
MlyI	GAGTC	3 cut(s)	5, 14, 119
MmeI	TCCRAC	1 cut(s)	591
MnlI	CCTC	9 cut(s)	111, 171, 221, 365, 395, 422, 505, 634, 641
Mox20I	TGGCCA	1 cut(s)	700
MscI	TGGCCA	1 cut(s)	700
MslI	CAYNNNNRTG	1 cut(s)	338
Msp20I	TGGCCA	1 cut(s)	700
MspI	CCGG	6 cut(s)	31, 77, 326, 338, 555, 579
MspR9I	CCNGG	6 cut(s)	62, 326, 462, 556, 580, 723
MvaI	CCWGG	3 cut(s)	62, 462, 723
MvnI	CGCG	1 cut(s)	620
MwoI	GCNNNNNNNGC	5 cut(s)	180, 237, 240, 317, 363
NciI	CCSGG	3 cut(s)	326, 556, 580
NcoI	CCATGG	2 cut(s)	285, 604
NdeII	GATC	3 cut(s)	304, 563, 582
NlaIII	CATG	3 cut(s)	289, 337, 608
NlaIV	GGNNCC	6 cut(s)	197, 208, 209, 283, 565, 577
NmuCI	GTSAC	2 cut(s)	164, 215
PaqCI	CACCTGC	1 cut(s)	99
PfoI	TCCNGGA	2 cut(s)	554, 721
PleI	GAGTC	3 cut(s)	5, 14, 118
PpsI	GAGTC	3 cut(s)	5, 14, 118
PpuMI	RGGWCCY	1 cut(s)	207
Psp124BI	GAGCTC	1 cut(s)	70
Psp5II	RGGWCCY	1 cut(s)	207
Psp6I	CCWGG	3 cut(s)	60, 460, 721
PspFI	CCCAGC	1 cut(s)	296
PspGI	CCWGG	3 cut(s)	60, 460, 721
PspN4I	GGNNCC	6 cut(s)	197, 208, 209, 283, 565, 577
PspPI	GGNCC	2 cut(s)	195, 207
PspPPI	RGGWCCY	1 cut(s)	207
PsuI	RGATCY	1 cut(s)	563
RseI	CAYNNNNRTG	1 cut(s)	338
SacI	GAGCTC	1 cut(s)	70
Sau3AI	GATC	3 cut(s)	304, 563, 582
Sau96I	GGNCC	2 cut(s)	195, 207
SchI	GAGTC	3 cut(s)	5, 14, 119
ScrFI	CCNGG	6 cut(s)	62, 326, 462, 556, 580, 723
SduI	GDGCHC	3 cut(s)	70, 90, 272
SetI	ASST	7 cut(s)	70, 93, 269, 415, 437, 541, 708
SinI	GGWCC	2 cut(s)	195, 207
SmiMI	CAYNNNNRTG	1 cut(s)	338
SmlI	CTYRAG	1 cut(s)	734
SmoI	CTYRAG	1 cut(s)	734
Sse9I	AATT	1 cut(s)	711
SstI	GAGCTC	1 cut(s)	70
StyD4I	CCNGG	6 cut(s)	60, 324, 460, 554, 578, 721
StyI	CCWWGG	3 cut(s)	45, 285, 604
TaaI	ACNGT	2 cut(s)	203, 572
TaiI	ACGT	1 cut(s)	269
TasI	AATT	1 cut(s)	711
TauI	GCSGC	7 cut(s)	186, 189, 234, 237, 243, 360, 393
TscAI	CASTG	1 cut(s)	577
TseFI	GTSAC	2 cut(s)	164, 215
TseI	GCWGC	4 cut(s)	57, 105, 237, 393
Tsp45I	GTSAC	2 cut(s)	164, 215
TspDTI	ATGAA	2 cut(s)	322, 629
TspGWI	ACGGA	1 cut(s)	203
TspRI	CASTG	1 cut(s)	577
VpaK11BI	GGWCC	2 cut(s)	195, 207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.