Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0013962

Physical Location & Seq

Genomic Coordinates Forward (+)

9299209 .. 9299928

Gene Structure 720 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g12720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGCCGTCGGACTCAGGCGATCAGCAGAAGAAGAGCAGCCAGAACCGGAAGACGGTGAAAGACGCCCAGGCCACGGGGGCACCACCGCCGGAGCAAGAGCACCTGCCCTGCCCACGCTGCGACTCCACCAACACCAAGTTCTGCTACTACAACAACTACAACTTCTCCCAGCCCCGCCATTTCTGCAAGTCCTGCCGCCGCTACTGGACCCACGGCGGCACCCTCCGCGACATCCCAGTAGGCGGCGGAACCCGCAAAAACGCCAAGCGCTCCCGCACCGCCACCTCAGCCGCCACAACCACCTCCACTTCTGACAACAACCCAATTTCCGCCACCCCTGTTTTTCTGAACCCAGGTGGTGGAGCGGCCTTACAGTTCGGTGATTTGAAGGGTAACATGGGAAATGGATGCGGTGGCGATGGGAGCTTCAATTCTCTGCTCAACACCCACGGGCCTGGTGGGTTTTTGGCTCTGGGCGGGTTCGGGCTTGGGCTTTCAGGTGGGTTCGAGGAGATGGGCTTTGGGCTTGGGAGAGCTTTTTGGCCTTTTCCTGCGATGGGAGGAGATTGTGGTTTCGGTGGACCCCACGGCAGGATGATGAACACGTGGCAGATCGAGAACGGAGAGGGTGGTGGGTTTGTGAACGTGGGTGTTAGCCCCGTCGGAGCTGAGTTATGTTCTTGGCCGGAGTTGGCAATTTCTACTCCTGGACTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0042545 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0045787 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051726 GO:0060255 GO:0065007 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

240

Amino Acids

25.03

Weight (kDa)

8.64

Isoelectric Point (pI)

39.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	33 - 89	1e-33	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50410 AT5G66940
fragaria_vesca	FvH4_1g14790
malus_domestica	MD02G1161200.v1.1 MD15G1275300.v1.1
prunus_persica	Prupe.7G142500_v2.0.a1
pyrus_communis	pycom02g12720 pycom15g23830
rosa_chinensis	RchiOBHm_Chr2g0103751
rosa_laevigata	RLG00000017255
rosa_multiflora	Rmu_sc0001852.1_g000001
rosa_rugosa	Rorug02G0117100
rosa_samantha	Rh2AG166000 Rh2BG173300 Rh2CG172000 Rh2DG171500
rosa_wichuraiana	Rw2G013000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	111
Acc36I	ACCTGC	1 cut(s)	111
AccB1I	GGYRCC	2 cut(s)	79, 218
AccB7I	CCANNNNNTGG	1 cut(s)	359
AccBSI	CCGCTC	1 cut(s)	365
AccII	CGCG	1 cut(s)	228
AcoI	YGGCCR	1 cut(s)	683
AcvI	CACGTG	1 cut(s)	606
AcyI	GRCGYC	1 cut(s)	63
AfeI	AGCGCT	1 cut(s)	269
AfiI	CCNNNNNNNGG	6 cut(s)	52, 73, 242, 359, 557, 591
AflIII	ACRYGT	1 cut(s)	603
AgsI	TTSAA	2 cut(s)	388, 430
AjnI	CCWGG	4 cut(s)	66, 352, 454, 706
AjuI	GAANNNNNNNTTGG	2 cut(s)	122, 154
AluBI	AGCT	3 cut(s)	426, 536, 668
AluI	AGCT	3 cut(s)	426, 536, 668
Alw21I	GWGCWC	1 cut(s)	102
Aor51HI	AGCGCT	1 cut(s)	269
AoxI	GGCC	5 cut(s)	69, 366, 452, 542, 683
ApeKI	GCWGC	2 cut(s)	36, 117
AspLEI	GCGC	1 cut(s)	270
AspS9I	GGNCC	3 cut(s)	207, 452, 581
AsuHPI	GGTGA	2 cut(s)	67, 392
AvaII	GGWCC	2 cut(s)	207, 581
BaeGI	GKGCMC	1 cut(s)	82
BanI	GGYRCC	2 cut(s)	79, 218
BbrPI	CACGTG	1 cut(s)	606
BbsI	GAAGAC	1 cut(s)	56
Bbv12I	GWGCWC	1 cut(s)	102
BbvCI	CCTCAGC	1 cut(s)	286
BbvI	GCAGC	2 cut(s)	48, 104
BccI	CCATC	3 cut(s)	413, 508, 550
BceAI	ACGGC	2 cut(s)	229, 604
BciT130I	CCWGG	4 cut(s)	68, 354, 456, 708
BfoI	RGCGCY	1 cut(s)	271
BfuAI	ACCTGC	1 cut(s)	111
BglI	GCCNNNNNGGC	1 cut(s)	77
BisI	GCNGC	8 cut(s)	37, 118, 196, 199, 217, 244, 291, 366
BlsI	GCNGC	8 cut(s)	38, 119, 197, 200, 218, 245, 292, 367
Bme1390I	CCNGG	4 cut(s)	68, 354, 456, 708
Bme18I	GGWCC	2 cut(s)	207, 581
BmgT120I	GGNCC	3 cut(s)	207, 452, 581
BmiI	GGNNCC	5 cut(s)	81, 209, 220, 250, 583
BmrFI	CCNGG	4 cut(s)	68, 354, 456, 708
BmrI	ACTGGG	1 cut(s)	230
BmsI	GCATC	1 cut(s)	398
BmuI	ACTGGG	1 cut(s)	230
BpiI	GAAGAC	1 cut(s)	56
Bpu10I	CCTNAGC	1 cut(s)	286
BpuEI	CTTGAG	1 cut(s)	698
BsaAI	YACGTR	1 cut(s)	606
BsaHI	GRCGYC	1 cut(s)	63
BsaJI	CCNNGG	6 cut(s)	66, 72, 211, 352, 448, 586
BsaWI	WCCGGW	1 cut(s)	45
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bsc4I	CCNNNNNNNGG	6 cut(s)	52, 73, 242, 359, 557, 591
Bse1I	ACTGG	2 cut(s)	209, 236
BseBI	CCWGG	4 cut(s)	68, 354, 456, 708
BseDI	CCNNGG	6 cut(s)	66, 72, 211, 352, 448, 586
BseGI	GGATG	3 cut(s)	231, 413, 600
BseLI	CCNNNNNNNGG	6 cut(s)	52, 73, 242, 359, 557, 591
BseMII	CTCAG	3 cut(s)	27, 300, 660
BseNI	ACTGG	2 cut(s)	209, 236
BseRI	GAGGAG	2 cut(s)	524, 576
BseSI	GKGCMC	1 cut(s)	82
BseXI	GCAGC	2 cut(s)	48, 104
BseYI	CCCAGC	1 cut(s)	168
Bsh1236I	CGCG	1 cut(s)	228
BshFI	GGCC	5 cut(s)	71, 368, 454, 544, 685
BshNI	GGYRCC	2 cut(s)	79, 218
BsiHKAI	GWGCWC	1 cut(s)	102
BsiSI	CCGG	3 cut(s)	46, 89, 686
BslI	CCNNNNNNNGG	6 cut(s)	52, 73, 242, 359, 557, 591
BsnI	GGCC	5 cut(s)	71, 368, 454, 544, 685
Bsp1286I	GDGCHC	2 cut(s)	82, 102
Bsp143I	GATC	2 cut(s)	19, 612
BspANI	GGCC	5 cut(s)	71, 368, 454, 544, 685
BspCNI	CTCAG	3 cut(s)	26, 299, 661
BspFNI	CGCG	1 cut(s)	228
BspLI	GGNNCC	5 cut(s)	81, 209, 220, 250, 583
BspMI	ACCTGC	1 cut(s)	111
BspQI	GCTCTTC	1 cut(s)	26
BspT107I	GGYRCC	2 cut(s)	79, 218
BsrBI	CCGCTC	1 cut(s)	365
BsrI	ACTGG	2 cut(s)	209, 236
BssECI	CCNNGG	6 cut(s)	66, 72, 211, 352, 448, 586
BssMI	GATC	2 cut(s)	19, 612
BssNI	GRCGYC	1 cut(s)	63
Bst2UI	CCWGG	4 cut(s)	68, 354, 456, 708
Bst4CI	ACNGT	2 cut(s)	55, 375
Bst6I	CTCTTC	1 cut(s)	26
BstACI	GRCGYC	1 cut(s)	63
BstAPI	GCANNNNNTGC	1 cut(s)	192
BstBAI	YACGTR	1 cut(s)	606
BstDEI	CTNAG	3 cut(s)	13, 286, 669
BstDSI	CCRYGG	4 cut(s)	72, 211, 448, 586
BstF5I	GGATG	3 cut(s)	231, 413, 600
BstFNI	CGCG	1 cut(s)	228
BstH2I	RGCGCY	1 cut(s)	271
BstHHI	GCGC	1 cut(s)	270
BstKTI	GATC	2 cut(s)	22, 615
BstMBI	GATC	2 cut(s)	19, 612
BstMWI	GCNNNNNNNGC	8 cut(s)	77, 117, 183, 192, 225, 252, 287, 423
BstNI	CCWGG	4 cut(s)	68, 354, 456, 708
BstSCI	CCNGG	4 cut(s)	66, 352, 454, 706
BstSLI	GKGCMC	1 cut(s)	82
BstUI	CGCG	1 cut(s)	228
BstV1I	GCAGC	2 cut(s)	48, 104
BstV2I	GAAGAC	1 cut(s)	56
BstXI	CCANNNNNNTGG	1 cut(s)	455
BsuRI	GGCC	5 cut(s)	71, 368, 454, 544, 685
BtgI	CCRYGG	4 cut(s)	72, 211, 448, 586
BtgZI	GCGATG	2 cut(s)	432, 569
BtsCI	GGATG	3 cut(s)	231, 413, 600
BveI	ACCTGC	1 cut(s)	111
CfoI	GCGC	1 cut(s)	270
Cfr13I	GGNCC	3 cut(s)	207, 452, 581
CseI	GACGC	1 cut(s)	71
CviAII	CATG	1 cut(s)	397
DdeI	CTNAG	3 cut(s)	13, 286, 669
DpnI	GATC	2 cut(s)	21, 614
DpnII	GATC	2 cut(s)	19, 612
EaeI	YGGCCR	1 cut(s)	683
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
EciI	GGCGGA	2 cut(s)	261, 319
Eco47I	GGWCC	2 cut(s)	207, 581
Eco47III	AGCGCT	1 cut(s)	269
Eco72I	CACGTG	1 cut(s)	606
EcoRII	CCWGG	4 cut(s)	66, 352, 454, 706
FaeI	CATG	1 cut(s)	400
FaiI	YATR	2 cut(s)	398, 676
FatI	CATG	1 cut(s)	396
FauI	CCCGC	4 cut(s)	182, 260, 281, 470
Fnu4HI	GCNGC	8 cut(s)	37, 118, 196, 199, 217, 244, 291, 366
FokI	GGATG	3 cut(s)	218, 420, 607
Fsp4HI	GCNGC	8 cut(s)	37, 118, 196, 199, 217, 244, 291, 366
GlaI	GCGC	1 cut(s)	269
GluI	GCNGC	8 cut(s)	37, 118, 196, 199, 217, 244, 291, 366
GsaI	CCCAGC	1 cut(s)	172
HaeII	RGCGCY	1 cut(s)	271
HaeIII	GGCC	5 cut(s)	71, 368, 454, 544, 685
HapII	CCGG	3 cut(s)	46, 89, 686
HgaI	GACGC	1 cut(s)	71
HhaI	GCGC	1 cut(s)	270
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	1 cut(s)	400
Hin6I	GCGC	1 cut(s)	268
HinP1I	GCGC	1 cut(s)	268
HinfI	GANTC	3 cut(s)	11, 122, 711
HpaII	CCGG	3 cut(s)	46, 89, 686
HphI	GGTGA	2 cut(s)	67, 392
Hpy166II	GTNNAC	2 cut(s)	581, 643
Hpy188I	TCNGA	4 cut(s)	10, 313, 348, 665
Hpy188III	TCNNGA	1 cut(s)	616
Hpy8I	GTNNAC	2 cut(s)	581, 643
Hpy99I	CGWCG	2 cut(s)	10, 665
HpyAV	CCTTC	1 cut(s)	382
HpyCH4III	ACNGT	2 cut(s)	55, 375
HpyCH4IV	ACGT	2 cut(s)	605, 645
HpyCH4V	TGCA	1 cut(s)	186
HpyF10VI	GCNNNNNNNGC	8 cut(s)	77, 117, 183, 192, 225, 252, 287, 423
HpyF3I	CTNAG	3 cut(s)	13, 286, 669
HpySE526I	ACGT	2 cut(s)	605, 645
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	1 cut(s)	400
HspAI	GCGC	1 cut(s)	268
Kzo9I	GATC	2 cut(s)	19, 612
LguI	GCTCTTC	1 cut(s)	26
LmnI	GCTCC	5 cut(s)	91, 275, 362, 423, 665
Lsp1109I	GCAGC	2 cut(s)	48, 104
LweI	GCATC	1 cut(s)	398
MaeII	ACGT	2 cut(s)	605, 645
MaeIII	GTNAC	1 cut(s)	392
MalI	GATC	2 cut(s)	21, 614
MbiI	CCGCTC	1 cut(s)	365
MboI	GATC	2 cut(s)	19, 612
MboII	GAAGA	3 cut(s)	40, 43, 61
MhlI	GDGCHC	2 cut(s)	82, 102
MluCI	AATT	3 cut(s)	324, 430, 696
MlyI	GAGTC	3 cut(s)	5, 116, 705
MmeI	TCCRAC	1 cut(s)	643
MnlI	CCTC	6 cut(s)	233, 295, 313, 502, 554, 619
MspI	CCGG	3 cut(s)	46, 89, 686
MspR9I	CCNGG	4 cut(s)	68, 354, 456, 708
MvaI	CCWGG	4 cut(s)	68, 354, 456, 708
MvnI	CGCG	1 cut(s)	228
MwoI	GCNNNNNNNGC	8 cut(s)	77, 117, 183, 192, 225, 252, 287, 423
NdeII	GATC	2 cut(s)	19, 612
NlaIII	CATG	1 cut(s)	400
NlaIV	GGNNCC	5 cut(s)	81, 209, 220, 250, 583
PaqCI	CACCTGC	1 cut(s)	111
PciSI	GCTCTTC	1 cut(s)	26
PflMI	CCANNNNNTGG	1 cut(s)	359
PfoI	TCCNGGA	1 cut(s)	706
PkrI	GCNGC	8 cut(s)	38, 119, 197, 200, 218, 245, 292, 367
PleI	GAGTC	3 cut(s)	5, 116, 705
PmaCI	CACGTG	1 cut(s)	606
PmlI	CACGTG	1 cut(s)	606
PpsI	GAGTC	3 cut(s)	5, 116, 705
Ppu21I	YACGTR	1 cut(s)	606
Psp6I	CCWGG	4 cut(s)	66, 352, 454, 706
PspCI	CACGTG	1 cut(s)	606
PspFI	CCCAGC	1 cut(s)	168
PspGI	CCWGG	4 cut(s)	66, 352, 454, 706
PspN4I	GGNNCC	5 cut(s)	81, 209, 220, 250, 583
PspPI	GGNCC	3 cut(s)	207, 452, 581
SapI	GCTCTTC	1 cut(s)	26
SatI	GCNGC	8 cut(s)	37, 118, 196, 199, 217, 244, 291, 366
Sau3AI	GATC	2 cut(s)	19, 612
Sau96I	GGNCC	3 cut(s)	207, 452, 581
SchI	GAGTC	3 cut(s)	5, 116, 705
ScrFI	CCNGG	4 cut(s)	68, 354, 456, 708
SduI	GDGCHC	2 cut(s)	82, 102
SfaNI	GCATC	1 cut(s)	398
SinI	GGWCC	2 cut(s)	207, 581
SmlI	CTYRAG	1 cut(s)	713
SmoI	CTYRAG	1 cut(s)	713
Sse9I	AATT	3 cut(s)	324, 430, 696
StyD4I	CCNGG	4 cut(s)	66, 352, 454, 706
TaaI	ACNGT	2 cut(s)	55, 375
TaiI	ACGT	2 cut(s)	608, 648
TaqI	TCGA	2 cut(s)	507, 615
TasI	AATT	3 cut(s)	324, 430, 696
TauI	GCSGC	6 cut(s)	198, 201, 219, 246, 293, 368
TseI	GCWGC	2 cut(s)	36, 117
TspDTI	ATGAA	1 cut(s)	614
TspGWI	ACGGA	1 cut(s)	636
Van91I	CCANNNNNTGG	1 cut(s)	359
VpaK11BI	GGWCC	2 cut(s)	207, 581
XcmI	CCANNNNNNNNNTGG	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.