Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0013962

Physical Location & Seq

Genomic Coordinates Reverse (-)

15731361 .. 15732098

Gene Structure 738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G142500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGCCGTCGGACTCGAGCGATCAGCAGAACAACCAGAACCGGAGGCCGGCGAAGGCCCAGACGCCGGGTGCCCCACCGCCGGAGCAAGAGCACCTCCCTTGCCCGCGCTGCGACTCCACCAACACCAAGTTCTGTTACTACAACAACTACAACTTCTCCCAGCCCCGCCACTTCTGCAAGTCCTGCCGCCGCTACTGGACCCACGGCGGCACCCTACGCGACATCCCAGTCGGCGGCGGAACCCGCAAGAACGCTAAGCGCTCCCGCACCACCAGCTCCTCCGCCATGATCGCCACCACCGCCACTTCCTCACTCTCCGACCACCCAATTCCCCCCACCCCAGTTTTTATGAACCCGGGTGGCGTCGCGGCGTTTGGGGACTTGAAGGGGAATGTGGGAAATGGATGCGGTGGTGGGGCCGGCGGCGCTAGCTTCACTTCTCTGCTCAATACTCAGGGGCCTGGGTTTTTGGCCTTAGGGGGGTTTGGTCTTGGGCTGGCCAATGGGTTTGAAGAGATGGGCTTTGGGCTTGGGAGAGCGGTGTGGCCTTTTCCCGGGGTGGGAGATGGTGGTGCTGGTGTTGGAGGTAATGGTGGGGGCCAAGGGATGATGAACACATGGCAATTTGAGAGTGGAGAAGGTGGTGGGATTGTGAATGTGGGTGCTGGCTCTGTTGGGGGTGAGTTCTGTTCTTGGCCAGAGTTGGCAATTTCTACCCCTGGAAATGGTCTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0042545 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0045787 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051726 GO:0060255 GO:0065007 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

246

Amino Acids

25.12

Weight (kDa)

8.51

Isoelectric Point (pI)

35.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50410 AT5G66940
fragaria_vesca	FvH4_1g14790
malus_domestica	MD02G1161200.v1.1 MD15G1275300.v1.1
prunus_persica	Prupe.7G142500_v2.0.a1
pyrus_communis	pycom02g12720 pycom15g23830
rosa_chinensis	RchiOBHm_Chr2g0103751
rosa_laevigata	RLG00000017255
rosa_multiflora	Rmu_sc0001852.1_g000001
rosa_rugosa	Rorug02G0117100
rosa_samantha	Rh2AG166000 Rh2BG173300 Rh2CG172000 Rh2DG171500
rosa_wichuraiana	Rw2G013000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	227
AccB1I	GGYRCC	2 cut(s)	68, 209
AccBSI	CCGCTC	1 cut(s)	539
AccII	CGCG	3 cut(s)	106, 219, 368
AcoI	YGGCCR	2 cut(s)	498, 695
AcyI	GRCGYC	2 cut(s)	62, 363
AfeI	AGCGCT	1 cut(s)	260
AfiI	CCNNNNNNNGG	8 cut(s)	46, 64, 79, 233, 480, 554, 560, 725
AgsI	TTSAA	2 cut(s)	385, 512
AjnI	CCWGG	2 cut(s)	460, 718
AjuI	GAANNNNNNNTTGG	2 cut(s)	113, 145
AluBI	AGCT	2 cut(s)	276, 432
AluI	AGCT	2 cut(s)	276, 432
Alw21I	GWGCWC	1 cut(s)	93
Alw26I	GTCTC	1 cut(s)	734
Ama87I	CYCGRG	3 cut(s)	13, 355, 554
Aor51HI	AGCGCT	1 cut(s)	260
AoxI	GGCC	9 cut(s)	44, 54, 417, 458, 471, 498, 545, 598, 695
ApeKI	GCWGC	1 cut(s)	108
AspLEI	GCGC	3 cut(s)	108, 261, 428
AspS9I	GGNCC	5 cut(s)	55, 198, 417, 458, 598
AsuC2I	CCSGG	5 cut(s)	66, 356, 357, 555, 556
AsuHPI	GGTGA	1 cut(s)	692
AsuNHI	GCTAGC	1 cut(s)	428
AvaI	CYCGRG	3 cut(s)	13, 355, 554
AvaII	GGWCC	1 cut(s)	198
AxyI	CCTNAGG	1 cut(s)	475
BaeGI	GKGCMC	1 cut(s)	73
BalI	TGGCCA	2 cut(s)	500, 697
BanI	GGYRCC	2 cut(s)	68, 209
Bbv12I	GWGCWC	1 cut(s)	93
BbvI	GCAGC	1 cut(s)	95
BccI	CCATC	2 cut(s)	511, 560
BceAI	ACGGC	1 cut(s)	220
BciT130I	CCWGG	2 cut(s)	462, 720
BcnI	CCSGG	5 cut(s)	66, 356, 357, 555, 556
BcoDI	GTCTC	1 cut(s)	734
BfaI	CTAG	1 cut(s)	429
BfoI	RGCGCY	2 cut(s)	262, 429
BisI	GCNGC	7 cut(s)	109, 187, 190, 208, 235, 369, 424
BlpI	GCTNAGC	1 cut(s)	255
BlsI	GCNGC	7 cut(s)	110, 188, 191, 209, 236, 370, 425
Bme1390I	CCNGG	7 cut(s)	66, 356, 357, 462, 555, 556, 720
Bme18I	GGWCC	1 cut(s)	198
BmeT110I	CYCGRG	3 cut(s)	13, 355, 554
BmgT120I	GGNCC	5 cut(s)	55, 198, 417, 458, 598
BmiI	GGNNCC	7 cut(s)	70, 200, 211, 241, 418, 459, 599
BmrFI	CCNGG	7 cut(s)	66, 356, 357, 462, 555, 556, 720
BmrI	ACTGGG	2 cut(s)	221, 335
BmsI	GCATC	1 cut(s)	395
BmtI	GCTAGC	1 cut(s)	432
BmuI	ACTGGG	2 cut(s)	221, 335
Bpu1102I	GCTNAGC	1 cut(s)	255
BpuMI	CCSGG	5 cut(s)	66, 356, 357, 555, 556
BsaHI	GRCGYC	2 cut(s)	62, 363
BsaI	GGTCTC	1 cut(s)	734
BsaJI	CCNNGG	7 cut(s)	202, 355, 461, 554, 555, 601, 718
BsaWI	WCCGGW	1 cut(s)	39
BsaXI	ACNNNNNCTCC	2 cut(s)	140, 170
Bsc4I	CCNNNNNNNGG	8 cut(s)	46, 64, 79, 233, 480, 554, 560, 725
Bse118I	RCCGGY	2 cut(s)	46, 419
Bse1I	ACTGG	3 cut(s)	200, 227, 341
Bse21I	CCTNAGG	1 cut(s)	475
BseBI	CCWGG	2 cut(s)	462, 720
BseDI	CCNNGG	7 cut(s)	202, 355, 461, 554, 555, 601, 718
BseGI	GGATG	3 cut(s)	222, 410, 612
BseLI	CCNNNNNNNGG	8 cut(s)	46, 64, 79, 233, 480, 554, 560, 725
BseMII	CTCAG	1 cut(s)	467
BseNI	ACTGG	3 cut(s)	200, 227, 341
BseRI	GAGGAG	1 cut(s)	268
BseSI	GKGCMC	1 cut(s)	73
BseXI	GCAGC	1 cut(s)	95
BseYI	CCCAGC	1 cut(s)	159
Bsh1236I	CGCG	3 cut(s)	106, 219, 368
BshFI	GGCC	9 cut(s)	46, 56, 419, 460, 473, 500, 547, 600, 697
BshNI	GGYRCC	2 cut(s)	68, 209
BsiHKAI	GWGCWC	1 cut(s)	93
BsiHKCI	CYCGRG	3 cut(s)	13, 355, 554
BsiSI	CCGG	7 cut(s)	40, 47, 65, 80, 356, 420, 555
BslFI	GGGAC	1 cut(s)	392
BslI	CCNNNNNNNGG	8 cut(s)	46, 64, 79, 233, 480, 554, 560, 725
BsmAI	GTCTC	1 cut(s)	734
BsmFI	GGGAC	1 cut(s)	392
BsnI	GGCC	9 cut(s)	46, 56, 419, 460, 473, 500, 547, 600, 697
Bso31I	GGTCTC	1 cut(s)	734
BsoBI	CYCGRG	3 cut(s)	13, 355, 554
Bsp1286I	GDGCHC	2 cut(s)	73, 93
Bsp143I	GATC	2 cut(s)	19, 288
Bsp1720I	GCTNAGC	1 cut(s)	255
BspANI	GGCC	9 cut(s)	46, 56, 419, 460, 473, 500, 547, 600, 697
BspCNI	CTCAG	1 cut(s)	466
BspFNI	CGCG	3 cut(s)	106, 219, 368
BspLI	GGNNCC	7 cut(s)	70, 200, 211, 241, 418, 459, 599
BspOI	GCTAGC	1 cut(s)	432
BspT107I	GGYRCC	2 cut(s)	68, 209
BspTNI	GGTCTC	1 cut(s)	734
BsrBI	CCGCTC	1 cut(s)	539
BsrFI	RCCGGY	2 cut(s)	46, 419
BsrI	ACTGG	3 cut(s)	200, 227, 341
BssAI	RCCGGY	2 cut(s)	46, 419
BssECI	CCNNGG	7 cut(s)	202, 355, 461, 554, 555, 601, 718
BssMI	GATC	2 cut(s)	19, 288
BssNI	GRCGYC	2 cut(s)	62, 363
BssT1I	CCWWGG	1 cut(s)	601
Bst2UI	CCWGG	2 cut(s)	462, 720
Bst6I	CTCTTC	1 cut(s)	507
BstACI	GRCGYC	2 cut(s)	62, 363
BstAPI	GCANNNNNTGC	1 cut(s)	183
BstC8I	GCNNGC	6 cut(s)	48, 104, 421, 430, 498, 667
BstDEI	CTNAG	3 cut(s)	255, 453, 475
BstDSI	CCRYGG	1 cut(s)	202
BstF5I	GGATG	3 cut(s)	222, 410, 612
BstFNI	CGCG	3 cut(s)	106, 219, 368
BstH2I	RGCGCY	2 cut(s)	262, 429
BstHHI	GCGC	3 cut(s)	108, 261, 428
BstKTI	GATC	2 cut(s)	22, 291
BstMAI	GTCTC	1 cut(s)	734
BstMBI	GATC	2 cut(s)	19, 288
BstNI	CCWGG	2 cut(s)	462, 720
BstSCI	CCNGG	7 cut(s)	64, 354, 355, 460, 553, 554, 718
BstSLI	GKGCMC	1 cut(s)	73
BstUI	CGCG	3 cut(s)	106, 219, 368
BstV1I	GCAGC	1 cut(s)	95
Bsu36I	CCTNAGG	1 cut(s)	475
BsuRI	GGCC	9 cut(s)	46, 56, 419, 460, 473, 500, 547, 600, 697
BtgI	CCRYGG	1 cut(s)	202
BtsCI	GGATG	3 cut(s)	222, 410, 612
Cac8I	GCNNGC	6 cut(s)	48, 104, 421, 430, 498, 667
CfoI	GCGC	3 cut(s)	108, 261, 428
Cfr10I	RCCGGY	2 cut(s)	46, 419
Cfr13I	GGNCC	5 cut(s)	55, 198, 417, 458, 598
Cfr9I	CCCGGG	2 cut(s)	355, 554
CseI	GACGC	2 cut(s)	70, 352
CviAII	CATG	2 cut(s)	286, 618
DdeI	CTNAG	3 cut(s)	255, 453, 475
DpnI	GATC	2 cut(s)	21, 290
DpnII	GATC	2 cut(s)	19, 288
DrdI	GACNNNNNNGTC	1 cut(s)	227
DseDI	GACNNNNNNGTC	1 cut(s)	227
EaeI	YGGCCR	2 cut(s)	498, 695
Eam1104I	CTCTTC	1 cut(s)	507
EarI	CTCTTC	1 cut(s)	507
EciI	GGCGGA	2 cut(s)	252, 271
Eco130I	CCWWGG	1 cut(s)	601
Eco31I	GGTCTC	1 cut(s)	734
Eco47I	GGWCC	1 cut(s)	198
Eco47III	AGCGCT	1 cut(s)	260
Eco81I	CCTNAGG	1 cut(s)	475
Eco88I	CYCGRG	3 cut(s)	13, 355, 554
EcoO109I	RGGNCCY	1 cut(s)	458
EcoRII	CCWGG	2 cut(s)	460, 718
EcoT14I	CCWWGG	1 cut(s)	601
ErhI	CCWWGG	1 cut(s)	601
FaeI	CATG	2 cut(s)	289, 621
FaiI	YATR	3 cut(s)	287, 350, 619
FaqI	GGGAC	1 cut(s)	392
FatI	CATG	2 cut(s)	285, 617
FauI	CCCGC	4 cut(s)	111, 173, 251, 272
Fnu4HI	GCNGC	7 cut(s)	109, 187, 190, 208, 235, 369, 424
FokI	GGATG	3 cut(s)	209, 417, 619
Fsp4HI	GCNGC	7 cut(s)	109, 187, 190, 208, 235, 369, 424
FspBI	CTAG	1 cut(s)	429
GlaI	GCGC	3 cut(s)	107, 260, 427
GluI	GCNGC	7 cut(s)	109, 187, 190, 208, 235, 369, 424
GsaI	CCCAGC	1 cut(s)	163
HaeII	RGCGCY	2 cut(s)	262, 429
HaeIII	GGCC	9 cut(s)	46, 56, 419, 460, 473, 500, 547, 600, 697
HapII	CCGG	7 cut(s)	40, 47, 65, 80, 356, 420, 555
HgaI	GACGC	2 cut(s)	70, 352
HhaI	GCGC	3 cut(s)	108, 261, 428
Hin1I	GRCGYC	2 cut(s)	62, 363
Hin1II	CATG	2 cut(s)	289, 621
Hin6I	GCGC	3 cut(s)	106, 259, 426
HinP1I	GCGC	3 cut(s)	106, 259, 426
HinfI	GANTC	2 cut(s)	11, 113
HpaII	CCGG	7 cut(s)	40, 47, 65, 80, 356, 420, 555
HphI	GGTGA	1 cut(s)	692
Hpy188I	TCNGA	2 cut(s)	10, 319
Hpy99I	CGWCG	2 cut(s)	10, 368
HpyAV	CCTTC	3 cut(s)	46, 379, 632
HpyCH4V	TGCA	1 cut(s)	177
HpyF3I	CTNAG	3 cut(s)	255, 453, 475
Hsp92I	GRCGYC	2 cut(s)	62, 363
Hsp92II	CATG	2 cut(s)	289, 621
HspAI	GCGC	3 cut(s)	106, 259, 426
KroI	GCCGGC	2 cut(s)	46, 419
KroNI	GCCGGC	2 cut(s)	48, 421
Kzo9I	GATC	2 cut(s)	19, 288
LmnI	GCTCC	3 cut(s)	82, 266, 281
Lsp1109I	GCAGC	1 cut(s)	95
LweI	GCATC	1 cut(s)	395
MaeI	CTAG	1 cut(s)	429
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	2 cut(s)	21, 290
MbiI	CCGCTC	1 cut(s)	539
MboI	GATC	2 cut(s)	19, 288
MboII	GAAGA	1 cut(s)	524
MhlI	GDGCHC	2 cut(s)	73, 93
MlsI	TGGCCA	2 cut(s)	500, 697
MluCI	AATT	3 cut(s)	327, 623, 708
MluNI	TGGCCA	2 cut(s)	500, 697
MlyI	GAGTC	2 cut(s)	5, 107
MmeI	TCCRAC	2 cut(s)	342, 562
MnlI	CCTC	5 cut(s)	36, 104, 289, 319, 578
Mox20I	TGGCCA	2 cut(s)	500, 697
MroNI	GCCGGC	2 cut(s)	46, 419
MscI	TGGCCA	2 cut(s)	500, 697
Msp20I	TGGCCA	2 cut(s)	500, 697
MspI	CCGG	7 cut(s)	40, 47, 65, 80, 356, 420, 555
MspR9I	CCNGG	7 cut(s)	66, 356, 357, 462, 555, 556, 720
MvaI	CCWGG	2 cut(s)	462, 720
MvnI	CGCG	3 cut(s)	106, 219, 368
NaeI	GCCGGC	2 cut(s)	48, 421
NciI	CCSGG	5 cut(s)	66, 356, 357, 555, 556
NdeII	GATC	2 cut(s)	19, 288
NgoMIV	GCCGGC	2 cut(s)	46, 419
NheI	GCTAGC	1 cut(s)	428
NlaIII	CATG	2 cut(s)	289, 621
NlaIV	GGNNCC	7 cut(s)	70, 200, 211, 241, 418, 459, 599
PaeR7I	CTCGAG	1 cut(s)	13
PdiI	GCCGGC	2 cut(s)	48, 421
PkrI	GCNGC	7 cut(s)	110, 188, 191, 209, 236, 370, 425
PleI	GAGTC	2 cut(s)	5, 107
PpsI	GAGTC	2 cut(s)	5, 107
Psp6I	CCWGG	2 cut(s)	460, 718
PspFI	CCCAGC	1 cut(s)	159
PspGI	CCWGG	2 cut(s)	460, 718
PspN4I	GGNNCC	7 cut(s)	70, 200, 211, 241, 418, 459, 599
PspPI	GGNCC	5 cut(s)	55, 198, 417, 458, 598
PspXI	VCTCGAGB	1 cut(s)	13
SatI	GCNGC	7 cut(s)	109, 187, 190, 208, 235, 369, 424
Sau3AI	GATC	2 cut(s)	19, 288
Sau96I	GGNCC	5 cut(s)	55, 198, 417, 458, 598
SchI	GAGTC	2 cut(s)	5, 107
ScrFI	CCNGG	7 cut(s)	66, 356, 357, 462, 555, 556, 720
SduI	GDGCHC	2 cut(s)	73, 93
SetI	ASST	5 cut(s)	96, 278, 434, 589, 643
SfaNI	GCATC	1 cut(s)	395
Sfr274I	CTCGAG	1 cut(s)	13
SinI	GGWCC	1 cut(s)	198
SlaI	CTCGAG	1 cut(s)	13
SmaI	CCCGGG	2 cut(s)	357, 556
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
Sse9I	AATT	3 cut(s)	327, 623, 708
SspMI	CTAG	1 cut(s)	429
StyD4I	CCNGG	7 cut(s)	64, 354, 355, 460, 553, 554, 718
StyI	CCWWGG	1 cut(s)	601
TaqI	TCGA	1 cut(s)	14
TasI	AATT	3 cut(s)	327, 623, 708
TauI	GCSGC	6 cut(s)	189, 192, 210, 237, 371, 426
TseI	GCWGC	1 cut(s)	108
TspDTI	ATGAA	2 cut(s)	365, 626
TspMI	CCCGGG	2 cut(s)	355, 554
VpaK11BI	GGWCC	1 cut(s)	198
XhoI	CTCGAG	1 cut(s)	13
XmaI	CCCGGG	2 cut(s)	355, 554
XspI	CTAG	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.