Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0013962

Physical Location & Seq

Genomic Coordinates Forward (+)

14535360 .. 14536085

Gene Structure 726 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017255

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGCCGTCGGACTCGGGCGACCCGAACAACCGGAGACCCACCAAGGCGCAGAGTCTGGGAGCTCCGCCACCTGAGCAGGAGCACCTCCCTTGTCCTCGCTGCGAGTCCACCAACACCAAGTTCTGCTACTACAACAACTACAACTTCTCTCAGCCTCGTCACTTCTGCAAGTCCTGCCGCCGCTACTGGACCCACGGTGGGACCCTCCGTGACATCCCCGTCGGCGGCGGCAGCCGCAAGAACGCCAAGCGTTCCCGCACCTCCTCCACCGGTTCCATGGTCTCTTCCGCATCTGATCACGCCTTGCCGGCCACCCCGGTTTTCGTGCCTGTCTCGGCTGGACAAGGAGGCCCCGGTGGCGGGGCCGGGCAGTTCGGCGGTTGCGGTGGCGGTGTGAAGGGTAATGTGAGTAATGGAGGGAGCTTTACTTCTCTGCTCAACACTCAGCCCGGGTTTTTGGCGCTGGGAGGATTTGGGCTTGGGCTTGCTACTGGGTTTGAGGAGATGGGCTTTGGGTTCGGGAGAGCGATGTGGCCTTTTCCCGGGGTGGGGTCGGATGGTGGTGCTGGAATCGGGGCGAACGGCGTGTCGCATGGGATGATGAATACGTGGCAGTTCGAGAATGGCGAGACTGGTGGGCTTGTTAACGTTGGTCTTGGTGGTGGTGGAGAGTTCTGTTCTTGGCCAGAGCTGGCAATTTCTACTCCTGGTAATGGTCTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0042545 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0045787 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051726 GO:0060255 GO:0065007 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

242

Amino Acids

24.67

Weight (kDa)

8.73

Isoelectric Point (pI)

39.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	27 - 83	1.1e-33	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50410 AT5G66940
fragaria_vesca	FvH4_1g14790
malus_domestica	MD02G1161200.v1.1 MD15G1275300.v1.1
prunus_persica	Prupe.7G142500_v2.0.a1
pyrus_communis	pycom02g12720 pycom15g23830
rosa_chinensis	RchiOBHm_Chr2g0103751
rosa_laevigata	RLG00000017255
rosa_multiflora	Rmu_sc0001852.1_g000001
rosa_rugosa	Rorug02G0117100
rosa_samantha	Rh2AG166000 Rh2BG173300 Rh2CG172000 Rh2DG171500
rosa_wichuraiana	Rw2G013000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	218
AclI	AACGTT	1 cut(s)	648
AcoI	YGGCCR	2 cut(s)	309, 683
AfiI	CCNNNNNNNGG	8 cut(s)	198, 224, 359, 360, 542, 548, 549, 713
AgeI	ACCGGT	1 cut(s)	269
AjnI	CCWGG	1 cut(s)	706
AjuI	GAANNNNNNNTTGG	2 cut(s)	104, 136
AluBI	AGCT	3 cut(s)	62, 423, 691
AluI	AGCT	3 cut(s)	62, 423, 691
Alw21I	GWGCWC	2 cut(s)	64, 84
Alw26I	GTCTC	5 cut(s)	28, 286, 337, 623, 722
AlwNI	CAGNNNCTG	1 cut(s)	55
Ama87I	CYCGRG	3 cut(s)	13, 449, 542
AoxI	GGCC	5 cut(s)	309, 349, 363, 533, 683
ApeKI	GCWGC	2 cut(s)	99, 231
ArsI	GACNNNNNNTTYG	2 cut(s)	572, 604
AsiGI	ACCGGT	1 cut(s)	269
AspLEI	GCGC	2 cut(s)	49, 463
AspS9I	GGNCC	4 cut(s)	189, 201, 350, 363
AsuC2I	CCSGG	7 cut(s)	317, 354, 367, 450, 451, 543, 544
AvaI	CYCGRG	3 cut(s)	13, 449, 542
AvaII	GGWCC	2 cut(s)	189, 201
BalI	TGGCCA	1 cut(s)	685
BanII	GRGCYC	1 cut(s)	64
Bbv12I	GWGCWC	2 cut(s)	64, 84
BbvI	GCAGC	2 cut(s)	86, 243
BccI	CCATC	2 cut(s)	499, 551
BceAI	ACGGC	1 cut(s)	598
BciT130I	CCWGG	1 cut(s)	708
BclI	TGATCA	1 cut(s)	295
BcnI	CCSGG	7 cut(s)	317, 354, 367, 450, 451, 543, 544
BcoDI	GTCTC	5 cut(s)	28, 286, 337, 623, 722
BfoI	RGCGCY	1 cut(s)	464
BglI	GCCNNNNNGGC	2 cut(s)	308, 357
BisI	GCNGC	7 cut(s)	100, 178, 181, 226, 229, 232, 235
BlsI	GCNGC	7 cut(s)	101, 179, 182, 227, 230, 233, 236
Bme1390I	CCNGG	8 cut(s)	317, 354, 367, 450, 451, 543, 544, 708
Bme18I	GGWCC	2 cut(s)	189, 201
BmeT110I	CYCGRG	3 cut(s)	13, 449, 542
BmgT120I	GGNCC	4 cut(s)	189, 201, 350, 363
BmiI	GGNNCC	6 cut(s)	191, 202, 203, 274, 352, 364
BmrFI	CCNGG	8 cut(s)	317, 354, 367, 450, 451, 543, 544, 708
BmrI	ACTGGG	1 cut(s)	501
BmsI	GCATC	1 cut(s)	299
BmuI	ACTGGG	1 cut(s)	501
Bpu10I	CCTNAGC	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	704
BpuMI	CCSGG	7 cut(s)	317, 354, 367, 450, 451, 543, 544
BsaAI	YACGTR	1 cut(s)	609
BsaI	GGTCTC	3 cut(s)	28, 286, 722
BsaJI	CCNNGG	8 cut(s)	42, 193, 276, 315, 352, 449, 542, 543
BsaWI	WCCGGW	2 cut(s)	30, 269
Bsc4I	CCNNNNNNNGG	8 cut(s)	198, 224, 359, 360, 542, 548, 549, 713
Bse118I	RCCGGY	2 cut(s)	269, 307
Bse1I	ACTGG	3 cut(s)	191, 496, 637
BseBI	CCWGG	1 cut(s)	708
BseDI	CCNNGG	8 cut(s)	42, 193, 276, 315, 352, 449, 542, 543
BseGI	GGATG	3 cut(s)	213, 562, 603
BseLI	CCNNNNNNNGG	8 cut(s)	198, 224, 359, 360, 542, 548, 549, 713
BseMII	CTCAG	3 cut(s)	63, 164, 458
BseNI	ACTGG	3 cut(s)	191, 496, 637
BseRI	GAGGAG	2 cut(s)	253, 515
BseXI	GCAGC	2 cut(s)	86, 243
BseYI	CCCAGC	1 cut(s)	463
BshFI	GGCC	5 cut(s)	311, 351, 365, 535, 685
BshTI	ACCGGT	1 cut(s)	269
BsiHKAI	GWGCWC	2 cut(s)	64, 84
BsiHKCI	CYCGRG	3 cut(s)	13, 449, 542
BsiSI	CCGG	8 cut(s)	31, 270, 308, 317, 354, 366, 450, 543
BslFI	GGGAC	1 cut(s)	214
BslI	CCNNNNNNNGG	8 cut(s)	198, 224, 359, 360, 542, 548, 549, 713
BsmAI	GTCTC	5 cut(s)	28, 286, 337, 623, 722
BsmFI	GGGAC	1 cut(s)	214
BsnI	GGCC	5 cut(s)	311, 351, 365, 535, 685
Bso31I	GGTCTC	3 cut(s)	28, 286, 722
BsoBI	CYCGRG	3 cut(s)	13, 449, 542
Bsp1286I	GDGCHC	2 cut(s)	64, 84
Bsp143I	GATC	1 cut(s)	295
Bsp19I	CCATGG	1 cut(s)	276
BspANI	GGCC	5 cut(s)	311, 351, 365, 535, 685
BspCNI	CTCAG	3 cut(s)	64, 163, 457
BspLI	GGNNCC	6 cut(s)	191, 202, 203, 274, 352, 364
BspTNI	GGTCTC	3 cut(s)	28, 286, 722
BsrFI	RCCGGY	2 cut(s)	269, 307
BsrI	ACTGG	3 cut(s)	191, 496, 637
BssAI	RCCGGY	2 cut(s)	269, 307
BssECI	CCNNGG	8 cut(s)	42, 193, 276, 315, 352, 449, 542, 543
BssMI	GATC	1 cut(s)	295
BssT1I	CCWWGG	2 cut(s)	42, 276
Bst2UI	CCWGG	1 cut(s)	708
Bst4CI	ACNGT	1 cut(s)	197
Bst6I	CTCTTC	1 cut(s)	289
BstAPI	GCANNNNNTGC	1 cut(s)	174
BstBAI	YACGTR	1 cut(s)	609
BstC8I	GCNNGC	3 cut(s)	309, 486, 693
BstDEI	CTNAG	3 cut(s)	72, 150, 444
BstDSI	CCRYGG	2 cut(s)	193, 276
BstF5I	GGATG	3 cut(s)	213, 562, 603
BstH2I	RGCGCY	1 cut(s)	464
BstHHI	GCGC	2 cut(s)	49, 463
BstKTI	GATC	1 cut(s)	298
BstMAI	GTCTC	5 cut(s)	28, 286, 337, 623, 722
BstMBI	GATC	1 cut(s)	295
BstMWI	GCNNNNNNNGC	6 cut(s)	73, 174, 231, 234, 308, 357
BstNI	CCWGG	1 cut(s)	708
BstSCI	CCNGG	8 cut(s)	315, 352, 365, 448, 449, 541, 542, 706
BstV1I	GCAGC	2 cut(s)	86, 243
BsuRI	GGCC	5 cut(s)	311, 351, 365, 535, 685
BtgI	CCRYGG	2 cut(s)	193, 276
BtgZI	GCGATG	1 cut(s)	542
BtsCI	GGATG	3 cut(s)	213, 562, 603
Cac8I	GCNNGC	3 cut(s)	309, 486, 693
CaiI	CAGNNNCTG	1 cut(s)	55
CfoI	GCGC	2 cut(s)	49, 463
Cfr10I	RCCGGY	2 cut(s)	269, 307
Cfr13I	GGNCC	4 cut(s)	189, 201, 350, 363
Cfr9I	CCCGGG	2 cut(s)	449, 542
CspAI	ACCGGT	1 cut(s)	269
CviAII	CATG	2 cut(s)	277, 593
DdeI	CTNAG	3 cut(s)	72, 150, 444
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
DrdI	GACNNNNNNGTC	1 cut(s)	218
DseDI	GACNNNNNNGTC	1 cut(s)	218
EaeI	YGGCCR	2 cut(s)	309, 683
Eam1104I	CTCTTC	1 cut(s)	289
EarI	CTCTTC	1 cut(s)	289
EciI	GGCGGA	1 cut(s)	54
Ecl136II	GAGCTC	1 cut(s)	62
Eco130I	CCWWGG	2 cut(s)	42, 276
Eco24I	GRGCYC	1 cut(s)	64
Eco31I	GGTCTC	3 cut(s)	28, 286, 722
Eco47I	GGWCC	2 cut(s)	189, 201
Eco53kI	GAGCTC	1 cut(s)	62
Eco88I	CYCGRG	3 cut(s)	13, 449, 542
EcoICRI	GAGCTC	1 cut(s)	62
EcoO109I	RGGNCCY	2 cut(s)	201, 350
EcoRII	CCWGG	1 cut(s)	706
EcoT14I	CCWWGG	2 cut(s)	42, 276
EcoT38I	GRGCYC	1 cut(s)	64
ErhI	CCWWGG	2 cut(s)	42, 276
FaeI	CATG	2 cut(s)	280, 596
FaiI	YATR	2 cut(s)	278, 594
FaqI	GGGAC	1 cut(s)	214
FatI	CATG	2 cut(s)	276, 592
FauI	CCCGC	2 cut(s)	263, 353
FbaI	TGATCA	1 cut(s)	295
Fnu4HI	GCNGC	7 cut(s)	100, 178, 181, 226, 229, 232, 235
FokI	GGATG	3 cut(s)	200, 569, 610
FriOI	GRGCYC	1 cut(s)	64
Fsp4HI	GCNGC	7 cut(s)	100, 178, 181, 226, 229, 232, 235
GlaI	GCGC	2 cut(s)	48, 462
GluI	GCNGC	7 cut(s)	100, 178, 181, 226, 229, 232, 235
GsaI	CCCAGC	1 cut(s)	467
HaeII	RGCGCY	1 cut(s)	464
HaeIII	GGCC	5 cut(s)	311, 351, 365, 535, 685
HapII	CCGG	8 cut(s)	31, 270, 308, 317, 354, 366, 450, 543
HhaI	GCGC	2 cut(s)	49, 463
Hin1II	CATG	2 cut(s)	280, 596
Hin6I	GCGC	2 cut(s)	47, 461
HinP1I	GCGC	2 cut(s)	47, 461
HincII	GTYRAC	1 cut(s)	646
HindII	GTYRAC	1 cut(s)	646
HinfI	GANTC	4 cut(s)	11, 52, 104, 570
HpaI	GTTAAC	1 cut(s)	646
HpaII	CCGG	8 cut(s)	31, 270, 308, 317, 354, 366, 450, 543
Hpy166II	GTNNAC	2 cut(s)	108, 646
Hpy188I	TCNGA	3 cut(s)	10, 295, 556
Hpy188III	TCNNGA	2 cut(s)	520, 619
Hpy8I	GTNNAC	2 cut(s)	108, 646
Hpy99I	CGWCG	2 cut(s)	10, 224
HpyAV	CCTTC	1 cut(s)	391
HpyCH4III	ACNGT	1 cut(s)	197
HpyCH4IV	ACGT	2 cut(s)	608, 648
HpyCH4V	TGCA	1 cut(s)	168
HpyF10VI	GCNNNNNNNGC	6 cut(s)	73, 174, 231, 234, 308, 357
HpyF3I	CTNAG	3 cut(s)	72, 150, 444
HpySE526I	ACGT	2 cut(s)	608, 648
Hsp92II	CATG	2 cut(s)	280, 596
HspAI	GCGC	2 cut(s)	47, 461
KflI	GGGWCCC	1 cut(s)	201
KroI	GCCGGC	1 cut(s)	307
KroNI	GCCGGC	1 cut(s)	309
Ksp22I	TGATCA	1 cut(s)	295
KspAI	GTTAAC	1 cut(s)	646
Kzo9I	GATC	1 cut(s)	295
LmnI	GCTCC	4 cut(s)	59, 67, 79, 420
Lsp1109I	GCAGC	2 cut(s)	86, 243
LweI	GCATC	1 cut(s)	299
MaeII	ACGT	2 cut(s)	608, 648
MaeIII	GTNAC	2 cut(s)	158, 209
MalI	GATC	1 cut(s)	297
MboI	GATC	1 cut(s)	295
MboII	GAAGA	1 cut(s)	276
MhlI	GDGCHC	2 cut(s)	64, 84
MlsI	TGGCCA	1 cut(s)	685
MluCI	AATT	1 cut(s)	696
MluNI	TGGCCA	1 cut(s)	685
MlyI	GAGTC	3 cut(s)	5, 61, 113
MmeI	TCCRAC	1 cut(s)	534
Mox20I	TGGCCA	1 cut(s)	685
MroNI	GCCGGC	1 cut(s)	307
MscI	TGGCCA	1 cut(s)	685
MseI	TTAA	1 cut(s)	645
Msp20I	TGGCCA	1 cut(s)	685
MspI	CCGG	8 cut(s)	31, 270, 308, 317, 354, 366, 450, 543
MspR9I	CCNGG	8 cut(s)	317, 354, 367, 450, 451, 543, 544, 708
MvaI	CCWGG	1 cut(s)	708
MwoI	GCNNNNNNNGC	6 cut(s)	73, 174, 231, 234, 308, 357
NaeI	GCCGGC	1 cut(s)	309
NciI	CCSGG	7 cut(s)	317, 354, 367, 450, 451, 543, 544
NcoI	CCATGG	1 cut(s)	276
NdeII	GATC	1 cut(s)	295
NgoMIV	GCCGGC	1 cut(s)	307
NlaIII	CATG	2 cut(s)	280, 596
NlaIV	GGNNCC	6 cut(s)	191, 202, 203, 274, 352, 364
NmeAIII	GCCGAG	1 cut(s)	314
NmuCI	GTSAC	2 cut(s)	158, 209
PcsI	WCGNNNNNNNCGW	2 cut(s)	20, 624
PdiI	GCCGGC	1 cut(s)	309
PfeI	GAWTC	1 cut(s)	570
PinAI	ACCGGT	1 cut(s)	269
PkrI	GCNGC	7 cut(s)	101, 179, 182, 227, 230, 233, 236
PleI	GAGTC	3 cut(s)	5, 60, 112
PpsI	GAGTC	3 cut(s)	5, 60, 112
Ppu21I	YACGTR	1 cut(s)	609
PpuMI	RGGWCCY	1 cut(s)	201
Psp124BI	GAGCTC	1 cut(s)	64
Psp1406I	AACGTT	1 cut(s)	648
Psp5II	RGGWCCY	1 cut(s)	201
Psp6I	CCWGG	1 cut(s)	706
PspFI	CCCAGC	1 cut(s)	463
PspGI	CCWGG	1 cut(s)	706
PspN4I	GGNNCC	6 cut(s)	191, 202, 203, 274, 352, 364
PspPI	GGNCC	4 cut(s)	189, 201, 350, 363
PspPPI	RGGWCCY	1 cut(s)	201
PstNI	CAGNNNCTG	1 cut(s)	55
SacI	GAGCTC	1 cut(s)	64
SaqAI	TTAA	1 cut(s)	645
SatI	GCNGC	7 cut(s)	100, 178, 181, 226, 229, 232, 235
Sau3AI	GATC	1 cut(s)	295
Sau96I	GGNCC	4 cut(s)	189, 201, 350, 363
SchI	GAGTC	3 cut(s)	5, 61, 113
ScrFI	CCNGG	8 cut(s)	317, 354, 367, 450, 451, 543, 544, 708
SduI	GDGCHC	2 cut(s)	64, 84
SetI	ASST	8 cut(s)	64, 73, 87, 263, 425, 611, 651, 693
SfaNI	GCATC	1 cut(s)	299
SinI	GGWCC	2 cut(s)	189, 201
SmaI	CCCGGG	2 cut(s)	451, 544
SmlI	CTYRAG	1 cut(s)	719
SmoI	CTYRAG	1 cut(s)	719
Sse9I	AATT	1 cut(s)	696
SstI	GAGCTC	1 cut(s)	64
StyD4I	CCNGG	8 cut(s)	315, 352, 365, 448, 449, 541, 542, 706
StyI	CCWWGG	2 cut(s)	42, 276
TaaI	ACNGT	1 cut(s)	197
TaiI	ACGT	2 cut(s)	611, 651
TaqI	TCGA	1 cut(s)	618
TasI	AATT	1 cut(s)	696
TauI	GCSGC	5 cut(s)	180, 183, 228, 231, 237
TfiI	GAWTC	1 cut(s)	570
Tru1I	TTAA	1 cut(s)	645
Tru9I	TTAA	1 cut(s)	645
TseFI	GTSAC	2 cut(s)	158, 209
TseI	GCWGC	2 cut(s)	99, 231
Tsp45I	GTSAC	2 cut(s)	158, 209
TspDTI	ATGAA	1 cut(s)	617
TspGWI	ACGGA	1 cut(s)	197
TspMI	CCCGGG	2 cut(s)	449, 542
VpaK11BI	GGWCC	2 cut(s)	189, 201
XcmI	CCANNNNNNNNNTGG	1 cut(s)	274
XmaI	CCCGGG	2 cut(s)	449, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.