Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013962

Physical Location & Seq

Genomic Coordinates Reverse (-)

26727819 .. 26728715

Gene Structure 897 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G66940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGCCTTCTGAATTCAGTGAATCTCGTCGGGTTCCTAAGATTCCCCACGGCCAAGGAGGATCTGTTGCGATTCCGACGGATCAACAAGAGCAGCTTTCTTGTCCTCGCTGTGAATCAACCAACACCAAGTTCTGTTACTACAACAACTACAACTTCTCACAACCTCGTCATTTCTGCAAGTCTTGTCGCCGTTACTGGACTCATGGAGGTACTCTCCGTGACATTCCCGTCGGTGGTGTTTCCCGTAAAAGCTCAAAACGTTCCCGGACTTATTCCTCTGCCGCTACCACCTCCGTTGTCGGAAGCCGGAACTTTCCCTTACAAGCTACGCCTGTTCTTTTCCCTCAGTCGTCTTCCAACGGCGGTATCACGACGGCGAAGGGAAGTGCTTCGTCGTTCTATGGCGGTTTCAGCTCTTTGATCAACTACAACGCCGCCGTGAGCAGAAATGGGCCTGGTGGCGGGTTTAATGGGCCAGATGCTTTTGGTCTTGGGCTTGGTCACGGGTCGTATTATGAGGACGTCAGATATGGGCAAGGAATAACGGTCTGGCCGTTTTCAAGTGGCGCTACTGATGCTGCAACTACTACAAGCCACATTGCTCAAATACCCGCCACGTGGCAGTTTGAAGGTCAAGAGAGCAAAGTCGGGTTCGTGTCTGGAGACTACGTAGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0042545 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0045787 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051726 GO:0060255 GO:0065007 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

225

Amino Acids

24.12

Weight (kDa)

9.26

Isoelectric Point (pI)

51.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	30 - 86	2.7e-33	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50410 AT5G66940
fragaria_vesca	FvH4_1g14790
malus_domestica	MD02G1161200.v1.1 MD15G1275300.v1.1
prunus_persica	Prupe.7G142500_v2.0.a1
pyrus_communis	pycom02g12720 pycom15g23830
rosa_chinensis	RchiOBHm_Chr2g0103751
rosa_laevigata	RLG00000017255
rosa_multiflora	Rmu_sc0001852.1_g000001
rosa_rugosa	Rorug02G0117100
rosa_samantha	Rh2AG166000 Rh2BG173300 Rh2CG172000 Rh2DG171500
rosa_wichuraiana	Rw2G013000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	227
AatII	GACGTC	1 cut(s)	525
AciI	CCGC	6 cut(s)	282, 363, 405, 435, 462, 612
AclI	AACGTT	1 cut(s)	259
AclWI	GGATC	2 cut(s)	67, 87
AcoI	YGGCCR	2 cut(s)	49, 551
AcsI	RAATTY	1 cut(s)	11
AcvI	CACGTG	1 cut(s)	618
AcyI	GRCGYC	1 cut(s)	522
AfaI	GTAC	1 cut(s)	211
AfiI	CCNNNNNNNGG	3 cut(s)	233, 461, 618
AgsI	TTSAA	2 cut(s)	561, 629
AjnI	CCWGG	1 cut(s)	454
AjuI	GAANNNNNNNTTGG	2 cut(s)	113, 145
AluBI	AGCT	4 cut(s)	94, 252, 326, 414
AluI	AGCT	4 cut(s)	94, 252, 326, 414
Alw26I	GTCTC	1 cut(s)	657
AlwI	GGATC	2 cut(s)	67, 87
AoxI	GGCC	4 cut(s)	49, 452, 473, 551
ApeKI	GCWGC	2 cut(s)	91, 578
ApoI	RAATTY	1 cut(s)	11
Asp700I	GAANNNNTTC	1 cut(s)	388
AspLEI	GCGC	1 cut(s)	569
AspS9I	GGNCC	2 cut(s)	452, 473
AsuC2I	CCSGG	1 cut(s)	265
BaeI	ACNNNNGTAYC	2 cut(s)	349, 382
BbrPI	CACGTG	1 cut(s)	618
BbsI	GAAGAC	1 cut(s)	345
BbvI	GCAGC	2 cut(s)	103, 565
BceAI	ACGGC	6 cut(s)	64, 174, 376, 390, 422, 538
BciT130I	CCWGG	1 cut(s)	456
BclI	TGATCA	1 cut(s)	420
BcnI	CCSGG	1 cut(s)	265
BcoDI	GTCTC	1 cut(s)	657
BfoI	RGCGCY	1 cut(s)	570
BisI	GCNGC	4 cut(s)	92, 282, 435, 579
BlsI	GCNGC	4 cut(s)	93, 283, 436, 580
Bme1390I	CCNGG	2 cut(s)	265, 456
BmgT120I	GGNCC	2 cut(s)	452, 473
BmiI	GGNNCC	1 cut(s)	33
BmrFI	CCNGG	2 cut(s)	265, 456
BmsI	GCATC	2 cut(s)	469, 565
BpiI	GAAGAC	1 cut(s)	345
BplI	GAGNNNNNCTC	2 cut(s)	198, 230
BpuMI	CCSGG	1 cut(s)	265
BsaAI	YACGTR	2 cut(s)	618, 670
BsaHI	GRCGYC	1 cut(s)	522
BsaJI	CCNNGG	2 cut(s)	46, 52
BsaXI	ACNNNNNCTCC	3 cut(s)	48, 78, 654
Bsc4I	CCNNNNNNNGG	3 cut(s)	233, 461, 618
Bse1I	ACTGG	1 cut(s)	200
Bse3DI	GCAATG	1 cut(s)	597
BseBI	CCWGG	1 cut(s)	456
BseDI	CCNNGG	2 cut(s)	46, 52
BseLI	CCNNNNNNNGG	3 cut(s)	233, 461, 618
BseMI	GCAATG	1 cut(s)	597
BseMII	CTCAG	1 cut(s)	359
BseNI	ACTGG	1 cut(s)	200
BseXI	GCAGC	2 cut(s)	103, 565
BshFI	GGCC	4 cut(s)	51, 454, 475, 553
BsiSI	CCGG	2 cut(s)	265, 307
BslI	CCNNNNNNNGG	3 cut(s)	233, 461, 618
BsmAI	GTCTC	1 cut(s)	657
BsnI	GGCC	4 cut(s)	51, 454, 475, 553
Bsp143I	GATC	3 cut(s)	59, 79, 420
BspACI	CCGC	6 cut(s)	282, 363, 405, 435, 462, 612
BspANI	GGCC	4 cut(s)	51, 454, 475, 553
BspCNI	CTCAG	1 cut(s)	358
BspLI	GGNNCC	1 cut(s)	33
BspPI	GGATC	2 cut(s)	67, 87
BsrDI	GCAATG	1 cut(s)	597
BsrI	ACTGG	1 cut(s)	200
BssECI	CCNNGG	2 cut(s)	46, 52
BssMI	GATC	3 cut(s)	59, 79, 420
BssNI	GRCGYC	1 cut(s)	522
BssT1I	CCWWGG	1 cut(s)	52
Bst2UI	CCWGG	1 cut(s)	456
Bst4CI	ACNGT	1 cut(s)	547
BstACI	GRCGYC	1 cut(s)	522
BstBAI	YACGTR	2 cut(s)	618, 670
BstDEI	CTNAG	2 cut(s)	36, 345
BstDSI	CCRYGG	1 cut(s)	46
BstH2I	RGCGCY	1 cut(s)	570
BstHHI	GCGC	1 cut(s)	569
BstKTI	GATC	3 cut(s)	62, 82, 423
BstMAI	GTCTC	1 cut(s)	657
BstMBI	GATC	3 cut(s)	59, 79, 420
BstMWI	GCNNNNNNNGC	2 cut(s)	411, 575
BstNI	CCWGG	1 cut(s)	456
BstSCI	CCNGG	2 cut(s)	263, 454
BstSNI	TACGTA	1 cut(s)	670
BstV1I	GCAGC	2 cut(s)	103, 565
BstV2I	GAAGAC	1 cut(s)	345
BstX2I	RGATCY	1 cut(s)	59
BstYI	RGATCY	1 cut(s)	59
BsuRI	GGCC	4 cut(s)	51, 454, 475, 553
BtgI	CCRYGG	1 cut(s)	46
BtsIMutI	CAGTG	1 cut(s)	22
CfoI	GCGC	1 cut(s)	569
Cfr13I	GGNCC	2 cut(s)	452, 473
Csp6I	GTAC	1 cut(s)	210
CspCI	CAANNNNNGTGG	2 cut(s)	277, 312
CviAII	CATG	1 cut(s)	203
CviQI	GTAC	1 cut(s)	210
DdeI	CTNAG	2 cut(s)	36, 345
DpnI	GATC	3 cut(s)	61, 81, 422
DpnII	GATC	3 cut(s)	59, 79, 420
DrdI	GACNNNNNNGTC	1 cut(s)	227
DseDI	GACNNNNNNGTC	1 cut(s)	227
EaeI	YGGCCR	2 cut(s)	49, 551
Eco105I	TACGTA	1 cut(s)	670
Eco130I	CCWWGG	1 cut(s)	52
Eco72I	CACGTG	1 cut(s)	618
EcoRI	GAATTC	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	454
EcoT14I	CCWWGG	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	52
FaeI	CATG	1 cut(s)	206
FaiI	YATR	4 cut(s)	204, 402, 516, 531
FalI	AAGNNNNNCTT	2 cut(s)	78, 110
FatI	CATG	1 cut(s)	202
FauI	CCCGC	2 cut(s)	455, 619
FbaI	TGATCA	1 cut(s)	420
Fnu4HI	GCNGC	4 cut(s)	92, 282, 435, 579
Fsp4HI	GCNGC	4 cut(s)	92, 282, 435, 579
GlaI	GCGC	1 cut(s)	568
GluI	GCNGC	4 cut(s)	92, 282, 435, 579
HaeII	RGCGCY	1 cut(s)	570
HaeIII	GGCC	4 cut(s)	51, 454, 475, 553
HapII	CCGG	2 cut(s)	265, 307
HhaI	GCGC	1 cut(s)	569
Hin1I	GRCGYC	1 cut(s)	522
Hin1II	CATG	1 cut(s)	206
Hin6I	GCGC	1 cut(s)	567
HinP1I	GCGC	1 cut(s)	567
HinfI	GANTC	5 cut(s)	20, 40, 70, 113, 199
HpaII	CCGG	2 cut(s)	265, 307
Hpy188I	TCNGA	4 cut(s)	10, 75, 302, 527
Hpy188III	TCNNGA	3 cut(s)	370, 635, 660
Hpy99I	CGWCG	5 cut(s)	30, 79, 233, 376, 397
HpyAV	CCTTC	3 cut(s)	15, 373, 623
HpyCH4III	ACNGT	1 cut(s)	547
HpyCH4IV	ACGT	4 cut(s)	259, 522, 617, 669
HpyCH4V	TGCA	2 cut(s)	177, 581
HpyF10VI	GCNNNNNNNGC	2 cut(s)	411, 575
HpyF3I	CTNAG	2 cut(s)	36, 345
HpySE526I	ACGT	4 cut(s)	259, 522, 617, 669
Hsp92I	GRCGYC	1 cut(s)	522
Hsp92II	CATG	1 cut(s)	206
HspAI	GCGC	1 cut(s)	567
Ksp22I	TGATCA	1 cut(s)	420
Kzo9I	GATC	3 cut(s)	59, 79, 420
LpnPI	CCDG	9 cut(s)	181, 278, 320, 345, 441, 468, 489, 535, 645
Lsp1109I	GCAGC	2 cut(s)	103, 565
LweI	GCATC	2 cut(s)	469, 565
MaeII	ACGT	4 cut(s)	259, 522, 617, 669
MaeIII	GTNAC	4 cut(s)	134, 191, 218, 500
MalI	GATC	3 cut(s)	61, 81, 422
MboI	GATC	3 cut(s)	59, 79, 420
MboII	GAAGA	1 cut(s)	345
MflI	RGATCY	1 cut(s)	59
MluCI	AATT	1 cut(s)	11
MlyI	GAGTC	1 cut(s)	193
MmeI	TCCRAC	3 cut(s)	98, 280, 381
MnlI	CCTC	8 cut(s)	50, 114, 174, 200, 286, 301, 354, 511
MroXI	GAANNNNTTC	1 cut(s)	388
MseI	TTAA	1 cut(s)	468
MspI	CCGG	2 cut(s)	265, 307
MspR9I	CCNGG	2 cut(s)	265, 456
MvaI	CCWGG	1 cut(s)	456
MwoI	GCNNNNNNNGC	2 cut(s)	411, 575
NciI	CCSGG	1 cut(s)	265
NdeII	GATC	3 cut(s)	59, 79, 420
NlaIII	CATG	1 cut(s)	206
NlaIV	GGNNCC	1 cut(s)	33
NmuCI	GTSAC	2 cut(s)	218, 500
PcsI	WCGNNNNNNNCGW	1 cut(s)	551
PdmI	GAANNNNTTC	1 cut(s)	388
PfeI	GAWTC	4 cut(s)	20, 40, 70, 113
PfoI	TCCNGGA	1 cut(s)	263
PkrI	GCNGC	4 cut(s)	93, 283, 436, 580
PleI	GAGTC	1 cut(s)	193
PmaCI	CACGTG	1 cut(s)	618
PmlI	CACGTG	1 cut(s)	618
PpsI	GAGTC	1 cut(s)	193
Ppu21I	YACGTR	2 cut(s)	618, 670
Psp1406I	AACGTT	1 cut(s)	259
Psp6I	CCWGG	1 cut(s)	454
PspCI	CACGTG	1 cut(s)	618
PspGI	CCWGG	1 cut(s)	454
PspN4I	GGNNCC	1 cut(s)	33
PspPI	GGNCC	2 cut(s)	452, 473
PsuI	RGATCY	1 cut(s)	59
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
SaqAI	TTAA	1 cut(s)	468
SatI	GCNGC	4 cut(s)	92, 282, 435, 579
Sau3AI	GATC	3 cut(s)	59, 79, 420
Sau96I	GGNCC	2 cut(s)	452, 473
SchI	GAGTC	1 cut(s)	193
ScrFI	CCNGG	2 cut(s)	265, 456
SfaNI	GCATC	2 cut(s)	469, 565
SnaBI	TACGTA	1 cut(s)	670
Sse9I	AATT	1 cut(s)	11
SsiI	CCGC	6 cut(s)	282, 363, 405, 435, 462, 612
StyD4I	CCNGG	2 cut(s)	263, 454
StyI	CCWWGG	1 cut(s)	52
TaaI	ACNGT	1 cut(s)	547
TaiI	ACGT	4 cut(s)	262, 525, 620, 672
TasI	AATT	1 cut(s)	11
TauI	GCSGC	2 cut(s)	284, 437
TfiI	GAWTC	4 cut(s)	20, 40, 70, 113
Tru1I	TTAA	1 cut(s)	468
Tru9I	TTAA	1 cut(s)	468
TscAI	CASTG	1 cut(s)	22
TseFI	GTSAC	2 cut(s)	218, 500
TseI	GCWGC	2 cut(s)	91, 578
Tsp45I	GTSAC	2 cut(s)	218, 500
TspGWI	ACGGA	3 cut(s)	92, 206, 283
TspRI	CASTG	1 cut(s)	22
XapI	RAATTY	1 cut(s)	11
XmnI	GAANNNNTTC	1 cut(s)	388
ZraI	GACGTC	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.