AT3G51140

Protein CHAPERONE-LIKE PROTEIN OF POR1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010931
Physical Location & Seq
Forward (+)
18997600 .. 18999904
2305 bp
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UTR
Exon/CDS
Intron
AT3G51140.1

Sequence Viewer

Length: 837 bp
ATGAATGCGTCCGGCTTAACTGTTACTCCGCCCAGATTTCACTTTCGATGGCGTTCTGATCGTTTTGGTACATCTCAGAGAAGCTCTCAAGCTTTTACTGTTCTTAGCAAATTGAATAATCGAAATTCCGCTTGGCCTGTTCTTAAAAGTTCTCGTTTGGCGCTTCCTACACAAAGAAGAAATGCTATGATCACTCGTGCCATGAGTGCTTCCTTTGGTGATATGGCAGACGATTCAGCTGCTATCTTCCCTCGGATCAATGTCAAAGACCCATATAAACGGCTTGGGATAAGCCGGATGGCCTCAGAGGATGAGATTCAAGGAGCGAGGAACTTTCTCATTCAGCAATACGCAGGGCACAAACCCAGTGTTGATGCAATCGAATCAGCTCATGACAAGATTATCATGCAGAAGTTTCATGAGAGGAAAAACCCCAAGATTGACATATCGAAAAAGGTTCGCCAAGTGAGGCAGTCCAAAGTTGTCAACTTTGTTTTCGAGAGATTCCAAACTCCTCCCAATGCAGTCCTTGTCAAAACAGCAGTCACGTTTGCAGTTCTTGGCGTTCTAACCGTTCTGTTCCCGACAGAAGAAGGACCGACCTTGCAGGTTTTGTTATCACTAATAGCTACCTTTTACTTCATCCACCAAAGGCTCCAGAAGAAGCTCTGGACTTTCCTTTACGGAGCGGGAGCTTTCATCTTCTCGTGGCTGGTTGGGACTTTCTTGATGGTATCTGTGATCCCACCGTTCATCAAAGGACCAAGAGGTTTTGAAGTCATGTCTTCGCTCCTAAGCTATGTTTTGCTTTGGGTCGCTTCGAGTTACCTCCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CPP1-like

Protein Analysis

278

Amino Acids

31.54

Weight (kDa)

10.66

Isoelectric Point (pI)

43.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CPP1-like PF11833 100 - 277 2.6e-51 Protein CHAPERONE-LIKE PROTEIN OF POR1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 598
AccBSI CCGCTC 1 cut(s) 689
AciI CCGC 3 cut(s) 29, 129, 689
AclWI GGATC 2 cut(s) 263, 736
AcsI RAATTY 1 cut(s) 124
AfaI GTAC 1 cut(s) 70
AgsI TTSAA 3 cut(s) 115, 320, 776
AjuI GAANNNNNNNTTGG 2 cut(s) 115, 147
AluBI AGCT 8 cut(s) 84, 92, 239, 389, 629, 667, 695, 798
AluI AGCT 8 cut(s) 84, 92, 239, 389, 629, 667, 695, 798
AlwI GGATC 2 cut(s) 263, 736
AoxI GGCC 2 cut(s) 134, 300
ApeKI GCWGC 1 cut(s) 239
ApoI RAATTY 1 cut(s) 124
ArsI GACNNNNNNTTYG 2 cut(s) 528, 560
AspLEI GCGC 1 cut(s) 163
AspS9I GGNCC 2 cut(s) 596, 761
AsuHPI GGTGA 1 cut(s) 230
AvaII GGWCC 2 cut(s) 596, 761
BaeGI GKGCMC 1 cut(s) 360
BauI CACGAG 2 cut(s) 195, 706
BbsI GAAGAC 1 cut(s) 777
BbvI GCAGC 1 cut(s) 226
BccI CCATC 3 cut(s) 42, 292, 724
BceAI ACGGC 1 cut(s) 296
BcgI CGANNNNNNTGC 2 cut(s) 221, 255
BclI TGATCA 1 cut(s) 189
BfoI RGCGCY 1 cut(s) 164
BfuAI ACCTGC 1 cut(s) 598
BisI GCNGC 1 cut(s) 240
BlsI GCNGC 1 cut(s) 241
Bme18I GGWCC 2 cut(s) 596, 761
BmgT120I GGNCC 2 cut(s) 596, 761
BmiI GGNNCC 1 cut(s) 656
BmrI ACTGGG 1 cut(s) 360
BmsI GCATC 1 cut(s) 364
BmuI ACTGGG 1 cut(s) 360
BpiI GAAGAC 1 cut(s) 777
BplI GAGNNNNNCTC 2 cut(s) 70, 102
BpmI CTGGAG 1 cut(s) 641
Bpu10I CCTNAGC 1 cut(s) 794
BpuEI CTTGAG 1 cut(s) 72
BsaJI CCNNGG 1 cut(s) 251
BsaWI WCCGGW 1 cut(s) 831
BsaXI ACNNNNNCTCC 2 cut(s) 10, 40
Bse1I ACTGG 1 cut(s) 366
BseDI CCNNGG 1 cut(s) 251
BseGI GGATG 3 cut(s) 303, 316, 642
BseMII CTCAG 2 cut(s) 89, 318
BseNI ACTGG 1 cut(s) 366
BseRI GAGGAG 1 cut(s) 504
BseSI GKGCMC 1 cut(s) 360
BseXI GCAGC 1 cut(s) 226
BshFI GGCC 2 cut(s) 136, 302
BsiSI CCGG 3 cut(s) 12, 295, 832
BslFI GGGAC 1 cut(s) 733
BsmFI GGGAC 1 cut(s) 733
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 2 cut(s) 136, 302
Bsp1286I GDGCHC 1 cut(s) 360
Bsp143I GATC 4 cut(s) 58, 189, 255, 741
BspACI CCGC 3 cut(s) 29, 129, 689
BspANI GGCC 2 cut(s) 136, 302
BspCNI CTCAG 2 cut(s) 88, 317
BspHI TCATGA 2 cut(s) 391, 418
BspLI GGNNCC 1 cut(s) 656
BspMI ACCTGC 1 cut(s) 598
BspPI GGATC 2 cut(s) 263, 736
BsrBI CCGCTC 1 cut(s) 689
BsrI ACTGG 1 cut(s) 366
BssECI CCNNGG 1 cut(s) 251
BssMI GATC 4 cut(s) 58, 189, 255, 741
BssSI CACGAG 2 cut(s) 195, 706
Bst2BI CACGAG 2 cut(s) 195, 706
Bst4CI ACNGT 4 cut(s) 22, 100, 574, 750
BstDEI CTNAG 4 cut(s) 75, 104, 304, 794
BstF5I GGATG 3 cut(s) 303, 316, 642
BstH2I RGCGCY 1 cut(s) 164
BstHHI GCGC 1 cut(s) 163
BstKTI GATC 4 cut(s) 61, 192, 258, 744
BstMBI GATC 4 cut(s) 58, 189, 255, 741
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstSLI GKGCMC 1 cut(s) 360
BstV1I GCAGC 1 cut(s) 226
BstV2I GAAGAC 1 cut(s) 777
BsuRI GGCC 2 cut(s) 136, 302
BtsCI GGATG 3 cut(s) 303, 316, 642
BtsIMutI CAGTG 1 cut(s) 373
BveI ACCTGC 1 cut(s) 598
CciI TCATGA 2 cut(s) 391, 418
CfoI GCGC 1 cut(s) 163
Cfr13I GGNCC 2 cut(s) 596, 761
Csp6I GTAC 1 cut(s) 69
CviAII CATG 5 cut(s) 202, 392, 406, 419, 781
CviQI GTAC 1 cut(s) 69
DdeI CTNAG 4 cut(s) 75, 104, 304, 794
DpnI GATC 4 cut(s) 60, 191, 257, 743
DpnII GATC 4 cut(s) 58, 189, 255, 741
EciI GGCGGA 1 cut(s) 18
Eco47I GGWCC 2 cut(s) 596, 761
FaeI CATG 5 cut(s) 205, 395, 409, 422, 784
FaqI GGGAC 1 cut(s) 733
FatI CATG 5 cut(s) 201, 391, 405, 418, 780
FauI CCCGC 1 cut(s) 682
FbaI TGATCA 1 cut(s) 189
Fnu4HI GCNGC 1 cut(s) 240
FokI GGATG 3 cut(s) 310, 323, 629
Fsp4HI GCNGC 1 cut(s) 240
GlaI GCGC 1 cut(s) 162
GluI GCNGC 1 cut(s) 240
GsuI CTGGAG 1 cut(s) 641
HaeII RGCGCY 1 cut(s) 164
HaeIII GGCC 2 cut(s) 136, 302
HapII CCGG 3 cut(s) 12, 295, 832
HhaI GCGC 1 cut(s) 163
Hin1II CATG 5 cut(s) 205, 395, 409, 422, 784
Hin6I GCGC 1 cut(s) 161
HinP1I GCGC 1 cut(s) 161
HincII GTYRAC 1 cut(s) 487
HindII GTYRAC 1 cut(s) 487
HindIII AAGCTT 1 cut(s) 90
HinfI GANTC 4 cut(s) 233, 316, 383, 504
HpaII CCGG 3 cut(s) 12, 295, 832
HphI GGTGA 1 cut(s) 230
Hpy166II GTNNAC 1 cut(s) 487
Hpy188I TCNGA 4 cut(s) 58, 78, 255, 307
Hpy188III TCNNGA 7 cut(s) 392, 419, 499, 583, 658, 670, 727
Hpy8I GTNNAC 1 cut(s) 487
HpyAV CCTTC 1 cut(s) 587
HpyCH4III ACNGT 4 cut(s) 22, 100, 574, 750
HpyCH4IV ACGT 1 cut(s) 548
HpyCH4V TGCA 5 cut(s) 377, 409, 524, 554, 607
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
HpyF3I CTNAG 4 cut(s) 75, 104, 304, 794
HpySE526I ACGT 1 cut(s) 548
Hsp92II CATG 5 cut(s) 205, 395, 409, 422, 784
HspAI GCGC 1 cut(s) 161
Ksp22I TGATCA 1 cut(s) 189
Kzo9I GATC 4 cut(s) 58, 189, 255, 741
LmnI GCTCC 5 cut(s) 323, 660, 686, 692, 795
Lsp1109I GCAGC 1 cut(s) 226
LweI GCATC 1 cut(s) 364
MaeII ACGT 1 cut(s) 548
MaeIII GTNAC 3 cut(s) 22, 544, 824
MalI GATC 4 cut(s) 60, 191, 257, 743
MbiI CCGCTC 1 cut(s) 689
MboI GATC 4 cut(s) 58, 189, 255, 741
MboII GAAGA 6 cut(s) 189, 238, 602, 673, 694, 777
MhlI GDGCHC 1 cut(s) 360
MluCI AATT 2 cut(s) 110, 124
MnlI CCTC 8 cut(s) 261, 301, 313, 321, 417, 462, 525, 761
MseI TTAA 2 cut(s) 17, 144
MspA1I CMGCKG 1 cut(s) 239
MspI CCGG 3 cut(s) 12, 295, 832
Mva1269I GAATGC 1 cut(s) 10
MwoI GCNNNNNNNGC 1 cut(s) 206
NdeII GATC 4 cut(s) 58, 189, 255, 741
NlaIII CATG 5 cut(s) 205, 395, 409, 422, 784
NlaIV GGNNCC 1 cut(s) 656
NmuCI GTSAC 1 cut(s) 544
PagI TCATGA 2 cut(s) 391, 418
PctI GAATGC 1 cut(s) 10
PfeI GAWTC 4 cut(s) 233, 316, 383, 504
PkrI GCNGC 1 cut(s) 241
PspN4I GGNNCC 1 cut(s) 656
PspPI GGNCC 2 cut(s) 596, 761
PvuII CAGCTG 1 cut(s) 239
RsaI GTAC 1 cut(s) 70
RsaNI GTAC 1 cut(s) 69
SaqAI TTAA 2 cut(s) 17, 144
SatI GCNGC 1 cut(s) 240
Sau3AI GATC 4 cut(s) 58, 189, 255, 741
Sau96I GGNCC 2 cut(s) 596, 761
SduI GDGCHC 1 cut(s) 360
SfaNI GCATC 1 cut(s) 364
SinI GGWCC 2 cut(s) 596, 761
SmlI CTYRAG 1 cut(s) 87
SmoI CTYRAG 1 cut(s) 87
Sse9I AATT 2 cut(s) 110, 124
SsiI CCGC 3 cut(s) 29, 129, 689
TaaI ACNGT 4 cut(s) 22, 100, 574, 750
TaiI ACGT 1 cut(s) 551
TaqI TCGA 6 cut(s) 46, 121, 381, 449, 498, 821
TaqII GACCGA 1 cut(s) 613
TasI AATT 2 cut(s) 110, 124
TfiI GAWTC 4 cut(s) 233, 316, 383, 504
Tru1I TTAA 2 cut(s) 17, 144
Tru9I TTAA 2 cut(s) 17, 144
TscAI CASTG 1 cut(s) 373
TseFI GTSAC 1 cut(s) 544
TseI GCWGC 1 cut(s) 239
Tsp45I GTSAC 1 cut(s) 544
TspDTI ATGAA 5 cut(s) 17, 407, 631, 688, 742
TspGWI ACGGA 1 cut(s) 699
TspRI CASTG 1 cut(s) 373
VpaK11BI GGWCC 2 cut(s) 596, 761
XapI RAATTY 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.