MD15G1248800.v1.1

Protein CHAPERONE-LIKE PROTEIN OF POR1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0010931
Physical Location & Seq
Reverse (-)
20758959 .. 20761526
2568 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1248800.v1.1.491

Sequence Viewer

Length: 825 bp
ATGCTGCTTCCAAATTCCAGCACGCAGTTCTGGTTCACTATGTGGGCAGGTTTCGAATTTTCCTCACAGTTGGAAGCCTGCAGGAAAGAACGAGCTACTTTGTGCGGAAAGGTACAGCTATGGCGAAGTTATTGGACTGGTTTTGCACAAAGGTTGTGCGCGCGGAAAACACATCTGATCAAGTTTGCCATGGATGCATCCTACGGCGATATGTCCAATGAACCAACTGCTATCTTTCCTAGGATTAATGTGAGGGACCCATACAAACGACTTGGAATAAGCAGGGAGGCTTCAGAAGATGAGATTCAGGGTGCAAGGAACTTCCTTATCCGACAGTATGCAGGTCACAAACCAAGTGTGGATGCAATTGAATCAGCCCATGACAAAATAATCATGCAGCAGTTCTACGACAGGAAGAACCCAAAAATTGACTTGAAGAAAAAGTACAGGGAAGTCAATCAGTCCCGTGTTGTGCAGGCTGTGAGAAATAGGTTCCGAACTCCGTCCACAAAATTCATTATAAAAACGTCAATTGCATTTGTAGTGCTTGCAGCTCTCACTGTTCTCTTTCCAACCGAAGAAGGTCCGACCCTTCAAGTAGCCCTTTCCTTGTTGGCTACCATTTACTTTGTATATGACAGGCTTAAGAGCAAGTTGCGAGCTTTTCTCTACAGTGCTGGATCATTTGCTTTGTCATGGCTCTTGGGAACCTTCTTGATGGTGTCTGTGGTTCCACCACTACTGAAAGGCCCAAGGAGTTTCGAGGTGACAACGTCATTGATAAGCTATGTGCTACTCTGGGTCTCGTCGACATATCTGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CPP1-like

Protein Analysis

275

Amino Acids

31.44

Weight (kDa)

9.92

Isoelectric Point (pI)

33.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CPP1-like PF11833 96 - 273 8.5e-53 Protein CHAPERONE-LIKE PROTEIN OF POR1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 521
Acc36I ACCTGC 2 cut(s) 38, 332
AccI GTMKAC 1 cut(s) 809
AccII CGCG 2 cut(s) 161, 163
AciI CCGC 2 cut(s) 105, 163
AclWI GGATC 1 cut(s) 688
AcsI RAATTY 3 cut(s) 13, 56, 512
AcuI CTGAAG 1 cut(s) 276
AdeI CACNNNGTG 1 cut(s) 42
AfaI GTAC 2 cut(s) 114, 446
AflII CTTAAG 1 cut(s) 644
AgsI TTSAA 3 cut(s) 371, 436, 596
AluBI AGCT 5 cut(s) 95, 118, 554, 662, 786
AluI AGCT 5 cut(s) 95, 118, 554, 662, 786
Alw26I GTCTC 1 cut(s) 808
AlwI GGATC 1 cut(s) 688
AoxI GGCC 1 cut(s) 748
ApeKI GCWGC 3 cut(s) 4, 397, 551
ApoI RAATTY 3 cut(s) 13, 56, 512
AseI ATTAAT 1 cut(s) 246
AspA2I CCTAGG 1 cut(s) 239
AspLEI GCGC 2 cut(s) 161, 163
AspS9I GGNCC 3 cut(s) 256, 584, 749
AsuHPI GGTGA 1 cut(s) 778
AsuII TTCGAA 1 cut(s) 54
AvaII GGWCC 2 cut(s) 256, 584
AvrII CCTAGG 1 cut(s) 239
BarI GAAGNNNNNNTAC 2 cut(s) 428, 460
BbvI GCAGC 2 cut(s) 409, 563
BccI CCATC 1 cut(s) 712
BceAI ACGGC 1 cut(s) 220
BclI TGATCA 1 cut(s) 177
BcoDI GTCTC 1 cut(s) 808
BfaI CTAG 1 cut(s) 240
BfmI CTRYAG 2 cut(s) 79, 670
BfrI CTTAAG 1 cut(s) 644
BfuAI ACCTGC 2 cut(s) 38, 332
BisI GCNGC 3 cut(s) 5, 398, 552
BlnI CCTAGG 1 cut(s) 239
BlsI GCNGC 3 cut(s) 6, 399, 553
Bme18I GGWCC 2 cut(s) 256, 584
BmgT120I GGNCC 3 cut(s) 256, 584, 749
BmiI GGNNCC 5 cut(s) 257, 258, 494, 709, 732
BmsI GCATC 3 cut(s) 184, 206, 352
BplI GAGNNNNNCTC 2 cut(s) 651, 683
Bpu14I TTCGAA 1 cut(s) 54
BsaI GGTCTC 1 cut(s) 808
BsaJI CCNNGG 3 cut(s) 189, 239, 752
Bse1I ACTGG 1 cut(s) 142
BseDI CCNNGG 3 cut(s) 189, 239, 752
BseGI GGATG 3 cut(s) 197, 199, 367
BseNI ACTGG 1 cut(s) 142
BsePI GCGCGC 1 cut(s) 159
BseXI GCAGC 2 cut(s) 409, 563
BsgI GTGCAG 1 cut(s) 494
Bsh1236I CGCG 2 cut(s) 161, 163
BshFI GGCC 1 cut(s) 750
BslFI GGGAC 2 cut(s) 269, 448
BsmAI GTCTC 1 cut(s) 808
BsmFI GGGAC 2 cut(s) 269, 448
BsnI GGCC 1 cut(s) 750
Bso31I GGTCTC 1 cut(s) 808
Bsp119I TTCGAA 1 cut(s) 54
Bsp143I GATC 2 cut(s) 177, 680
Bsp19I CCATGG 1 cut(s) 189
BspACI CCGC 2 cut(s) 105, 163
BspANI GGCC 1 cut(s) 750
BspFNI CGCG 2 cut(s) 161, 163
BspLI GGNNCC 5 cut(s) 257, 258, 494, 709, 732
BspMAI CTGCAG 1 cut(s) 83
BspMI ACCTGC 2 cut(s) 38, 332
BspPI GGATC 1 cut(s) 688
BspT104I TTCGAA 1 cut(s) 54
BspTI CTTAAG 1 cut(s) 644
BspTNI GGTCTC 1 cut(s) 808
BsrI ACTGG 1 cut(s) 142
BssECI CCNNGG 3 cut(s) 189, 239, 752
BssHII GCGCGC 1 cut(s) 159
BssMI GATC 2 cut(s) 177, 680
BssT1I CCWWGG 3 cut(s) 189, 239, 752
Bst4CI ACNGT 4 cut(s) 69, 336, 562, 674
BstAFI CTTAAG 1 cut(s) 644
BstBI TTCGAA 1 cut(s) 54
BstC8I GCNNGC 6 cut(s) 23, 79, 161, 477, 549, 660
BstDSI CCRYGG 1 cut(s) 189
BstF5I GGATG 3 cut(s) 197, 199, 367
BstFNI CGCG 2 cut(s) 161, 163
BstHHI GCGC 2 cut(s) 161, 163
BstKTI GATC 2 cut(s) 180, 683
BstMAI GTCTC 1 cut(s) 808
BstMBI GATC 2 cut(s) 177, 680
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstSFI CTRYAG 2 cut(s) 79, 670
BstUI CGCG 2 cut(s) 161, 163
BstV1I GCAGC 2 cut(s) 409, 563
BsuRI GGCC 1 cut(s) 750
BtgI CCRYGG 1 cut(s) 189
BtsCI GGATG 3 cut(s) 197, 199, 367
BtsIMutI CAGTG 2 cut(s) 558, 679
BveI ACCTGC 2 cut(s) 38, 332
Cac8I GCNNGC 6 cut(s) 23, 79, 161, 477, 549, 660
CfoI GCGC 2 cut(s) 161, 163
Cfr13I GGNCC 3 cut(s) 256, 584, 749
Csp6I GTAC 2 cut(s) 113, 445
CviAII CATG 4 cut(s) 190, 380, 394, 696
CviQI GTAC 2 cut(s) 113, 445
DpnI GATC 2 cut(s) 179, 682
DpnII GATC 2 cut(s) 177, 680
DraIII CACNNNGTG 1 cut(s) 42
Eco130I CCWWGG 3 cut(s) 189, 239, 752
Eco31I GGTCTC 1 cut(s) 808
Eco47I GGWCC 2 cut(s) 256, 584
Eco57I CTGAAG 1 cut(s) 276
EcoO109I RGGNCCY 1 cut(s) 256
EcoT14I CCWWGG 3 cut(s) 189, 239, 752
EcoT22I ATGCAT 1 cut(s) 199
ErhI CCWWGG 3 cut(s) 189, 239, 752
FaeI CATG 4 cut(s) 193, 383, 397, 699
FalI AAGNNNNNCTT 2 cut(s) 588, 620
FaqI GGGAC 2 cut(s) 269, 448
FatI CATG 4 cut(s) 189, 379, 393, 695
FbaI TGATCA 1 cut(s) 177
FblI GTMKAC 1 cut(s) 809
Fnu4HI GCNGC 3 cut(s) 5, 398, 552
FokI GGATG 3 cut(s) 184, 206, 374
Fsp4HI GCNGC 3 cut(s) 5, 398, 552
FspBI CTAG 1 cut(s) 240
GlaI GCGC 2 cut(s) 160, 162
GluI GCNGC 3 cut(s) 5, 398, 552
HaeIII GGCC 1 cut(s) 750
HhaI GCGC 2 cut(s) 161, 163
Hin1II CATG 4 cut(s) 193, 383, 397, 699
Hin6I GCGC 2 cut(s) 159, 161
HinP1I GCGC 2 cut(s) 159, 161
HincII GTYRAC 1 cut(s) 810
HindII GTYRAC 1 cut(s) 810
HinfI GANTC 2 cut(s) 304, 371
HphI GGTGA 1 cut(s) 778
Hpy166II GTNNAC 3 cut(s) 36, 507, 810
Hpy188I TCNGA 6 cut(s) 177, 295, 332, 497, 588, 819
Hpy188III TCNNGA 1 cut(s) 715
Hpy8I GTNNAC 3 cut(s) 36, 507, 810
Hpy99I CGWCG 1 cut(s) 811
HpyAV CCTTC 3 cut(s) 575, 602, 721
HpyCH4III ACNGT 4 cut(s) 69, 336, 562, 674
HpyCH4IV ACGT 2 cut(s) 527, 773
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpySE526I ACGT 2 cut(s) 527, 773
Hsp92II CATG 4 cut(s) 193, 383, 397, 699
HspAI GCGC 2 cut(s) 159, 161
KflI GGGWCCC 1 cut(s) 256
Ksp22I TGATCA 1 cut(s) 177
Kzo9I GATC 2 cut(s) 177, 680
Lsp1109I GCAGC 2 cut(s) 409, 563
LweI GCATC 3 cut(s) 184, 206, 352
MaeI CTAG 1 cut(s) 240
MaeII ACGT 2 cut(s) 527, 773
MaeIII GTNAC 2 cut(s) 344, 766
MalI GATC 2 cut(s) 179, 682
MboI GATC 2 cut(s) 177, 680
MboII GAAGA 4 cut(s) 308, 427, 448, 590
MfeI CAATTG 2 cut(s) 366, 531
MluCI AATT 6 cut(s) 13, 56, 366, 426, 512, 531
MmeI TCCRAC 4 cut(s) 51, 355, 596, 611
MnlI CCTC 4 cut(s) 73, 246, 280, 757
Mph1103I ATGCAT 1 cut(s) 199
MseI TTAA 2 cut(s) 246, 645
MspCI CTTAAG 1 cut(s) 644
MunI CAATTG 2 cut(s) 366, 531
MvnI CGCG 2 cut(s) 161, 163
MwoI GCNNNNNNNGC 1 cut(s) 194
NcoI CCATGG 1 cut(s) 189
NdeII GATC 2 cut(s) 177, 680
NlaIII CATG 4 cut(s) 193, 383, 397, 699
NlaIV GGNNCC 5 cut(s) 257, 258, 494, 709, 732
NmuCI GTSAC 2 cut(s) 344, 766
NsiI ATGCAT 1 cut(s) 199
NspV TTCGAA 1 cut(s) 54
PauI GCGCGC 1 cut(s) 159
PfeI GAWTC 2 cut(s) 304, 371
PflFI GACNNNGTC 1 cut(s) 772
PkrI GCNGC 3 cut(s) 6, 399, 553
PpuMI RGGWCCY 1 cut(s) 256
PshBI ATTAAT 1 cut(s) 246
PsiI TTATAA 1 cut(s) 521
Psp5II RGGWCCY 1 cut(s) 256
PspN4I GGNNCC 5 cut(s) 257, 258, 494, 709, 732
PspPI GGNCC 3 cut(s) 256, 584, 749
PspPPI RGGWCCY 1 cut(s) 256
PstI CTGCAG 1 cut(s) 83
PsyI GACNNNGTC 1 cut(s) 772
PteI GCGCGC 1 cut(s) 159
RsaI GTAC 2 cut(s) 114, 446
RsaNI GTAC 2 cut(s) 113, 445
SalI GTCGAC 1 cut(s) 808
SaqAI TTAA 2 cut(s) 246, 645
SatI GCNGC 3 cut(s) 5, 398, 552
Sau3AI GATC 2 cut(s) 177, 680
Sau96I GGNCC 3 cut(s) 256, 584, 749
SbfI CCTGCAGG 1 cut(s) 83
SdaI CCTGCAGG 1 cut(s) 83
SfaNI GCATC 3 cut(s) 184, 206, 352
SfcI CTRYAG 2 cut(s) 79, 670
SfuI TTCGAA 1 cut(s) 54
SinI GGWCC 2 cut(s) 256, 584
SmlI CTYRAG 1 cut(s) 644
SmoI CTYRAG 1 cut(s) 644
Sse8387I CCTGCAGG 1 cut(s) 83
Sse9I AATT 6 cut(s) 13, 56, 366, 426, 512, 531
SsiI CCGC 2 cut(s) 105, 163
SspMI CTAG 1 cut(s) 240
StyI CCWWGG 3 cut(s) 189, 239, 752
TaaI ACNGT 4 cut(s) 69, 336, 562, 674
TaiI ACGT 2 cut(s) 530, 776
TaqI TCGA 3 cut(s) 54, 762, 809
TasI AATT 6 cut(s) 13, 56, 366, 426, 512, 531
TatI WGTACW 1 cut(s) 444
TfiI GAWTC 2 cut(s) 304, 371
Tru1I TTAA 2 cut(s) 246, 645
Tru9I TTAA 2 cut(s) 246, 645
TscAI CASTG 2 cut(s) 565, 679
TseFI GTSAC 2 cut(s) 344, 766
TseI GCWGC 3 cut(s) 4, 397, 551
Tsp45I GTSAC 2 cut(s) 344, 766
TspDTI ATGAA 2 cut(s) 234, 505
TspGWI ACGGA 1 cut(s) 492
TspRI CASTG 2 cut(s) 565, 679
Tth111I GACNNNGTC 1 cut(s) 772
Vha464I CTTAAG 1 cut(s) 644
VpaK11BI GGWCC 2 cut(s) 256, 584
VspI ATTAAT 1 cut(s) 246
XapI RAATTY 3 cut(s) 13, 56, 512
XmaJI CCTAGG 1 cut(s) 239
XmiI GTMKAC 1 cut(s) 809
XspI CTAG 1 cut(s) 240
Zsp2I ATGCAT 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.