FvH4_1g12151

Protein CHAPERONE-LIKE PROTEIN OF POR1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0010931
Physical Location & Seq
Reverse (-)
6639396 .. 6642348
2953 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g12151.t3

Sequence Viewer

Length: 864 bp
ATGGTGATGAGTTCTGTAGCTGGGCTGACGGGCACTCCCTCCAGATGCTGCTTTCAACTGCCCCTCGGAAGTTCCGCTTCTCGGTGCTCCAAAAGAGTTTCCAACCTCCCTGGCGCCCTTAAACCTGCAGGAAACAATGTGCTGCTTCGTCTCGAAAGAAGTTGTTGGGCTGGCGTTTCACAACGATTGAATGCGAGGAGAACTCCTGTGATCAAATGTGCCATGGATGCTTCATTTGGTGATATGTCTGATAAACCAACTGCTATCTTTCCTAGGATTAATGTGATGGACCCATACAAACGGCTTGGGATAAGCAGGGAGGCAGATGATGATGAAATTGAAGGTGCCTGGAAATTCCTTGTCCGACAATATGCAGGTCACAAACCAAGTAAAGTTGCAATTGATTCAGCATATGAAAAAATAGTCATGCAACGTTATCATGCAAAGAAGAACCCACCATTCGACTTTAAGAAAAAGGTTAGGTCCCTCGGTCAGTCCCGTGTTCTGCAGGCTGTGAGAAGTAGGTTCCGCACTCCAGCCACACAGTTCATTGTAAAAACTTCCATTGCATTTGTATTGCTGGGAGCCCTCACTCTTCTATTCCCAACTGAAGAAGGTCCAACCCTGCAAGTAGCTATTTCTTTGTTGGCCACCATATATTTCATACATGAAAGACTGCAGAGCAAATGGCGAGCTTTTCTCTACAGTGTTGGAGCATTTGTTTTCTCATGGCTGGTGGGAACCTTCTTGATGGTGGCTGTGATTCCACCCATACCTTTCATCAAAGGACTGAGGAGTTTTGAGGTGATAACTTCACTCATAACTTATCTGCTACTATGGATTGCATCTACTTATCTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CPP1-like

Protein Analysis

288

Amino Acids

32.07

Weight (kDa)

10.14

Isoelectric Point (pI)

45.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CPP1-like PF11833 107 - 235 1.6e-26 Protein CHAPERONE-LIKE PROTEIN OF POR1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 133, 365
AccB1I GGYRCC 2 cut(s) 113, 344
AciI CCGC 2 cut(s) 75, 529
AclI AACGTT 1 cut(s) 433
AcoI YGGCCR 1 cut(s) 648
AcsI RAATTY 1 cut(s) 353
AcuI CTGAAG 1 cut(s) 630
AcyI GRCGYC 1 cut(s) 114
AfiI CCNNNNNNNGG 1 cut(s) 81
AgsI TTSAA 3 cut(s) 56, 190, 341
AjnI CCWGG 2 cut(s) 109, 347
AluBI AGCT 3 cut(s) 20, 635, 695
AluI AGCT 3 cut(s) 20, 635, 695
Alw21I GWGCWC 1 cut(s) 89
Alw26I GTCTC 1 cut(s) 155
AlwNI CAGNNNCTG 1 cut(s) 48
AoxI GGCC 1 cut(s) 648
ApeKI GCWGC 2 cut(s) 48, 142
ApoI RAATTY 1 cut(s) 353
AseI ATTAAT 1 cut(s) 279
AspA2I CCTAGG 1 cut(s) 272
AspLEI GCGC 1 cut(s) 116
AspS9I GGNCC 3 cut(s) 289, 483, 617
AsuHPI GGTGA 3 cut(s) 16, 251, 817
AvaII GGWCC 3 cut(s) 289, 483, 617
AvrII CCTAGG 1 cut(s) 272
BaeGI GKGCMC 1 cut(s) 35
BalI TGGCCA 1 cut(s) 650
BanI GGYRCC 2 cut(s) 113, 344
BanII GRGCYC 1 cut(s) 589
Bbv12I GWGCWC 1 cut(s) 89
BbvI GCAGC 2 cut(s) 35, 129
BccI CCATC 2 cut(s) 280, 745
BceAI ACGGC 1 cut(s) 317
BciT130I CCWGG 2 cut(s) 111, 349
BclI TGATCA 1 cut(s) 210
BcoDI GTCTC 1 cut(s) 155
BfaI CTAG 1 cut(s) 273
BfmI CTRYAG 5 cut(s) 15, 126, 506, 677, 703
BfoI RGCGCY 1 cut(s) 117
BfuAI ACCTGC 2 cut(s) 133, 365
BisI GCNGC 2 cut(s) 49, 143
BlnI CCTAGG 1 cut(s) 272
BlsI GCNGC 2 cut(s) 50, 144
Bme1390I CCNGG 2 cut(s) 111, 349
Bme18I GGWCC 3 cut(s) 289, 483, 617
BmgT120I GGNCC 3 cut(s) 289, 483, 617
BmiI GGNNCC 7 cut(s) 115, 291, 346, 485, 527, 586, 742
BmrFI CCNGG 2 cut(s) 111, 349
BmsI GCATC 3 cut(s) 35, 217, 854
BplI GAGNNNNNCTC 4 cut(s) 187, 219, 684, 716
BpmI CTGGAG 2 cut(s) 25, 519
BsaHI GRCGYC 1 cut(s) 114
BsaJI CCNNGG 5 cut(s) 64, 109, 222, 272, 487
BsaXI ACNNNNNCTCC 4 cut(s) 19, 49, 705, 735
Bsc4I CCNNNNNNNGG 1 cut(s) 81
Bse3DI GCAATG 1 cut(s) 564
BseBI CCWGG 2 cut(s) 111, 349
BseDI CCNNGG 5 cut(s) 64, 109, 222, 272, 487
BseGI GGATG 1 cut(s) 232
BseLI CCNNNNNNNGG 1 cut(s) 81
BseMI GCAATG 1 cut(s) 564
BseMII CTCAG 1 cut(s) 782
BseRI GAGGAG 2 cut(s) 211, 808
BseSI GKGCMC 1 cut(s) 35
BseXI GCAGC 2 cut(s) 35, 129
BseYI CCCAGC 2 cut(s) 20, 580
BshFI GGCC 1 cut(s) 650
BshNI GGYRCC 2 cut(s) 113, 344
BsiHKAI GWGCWC 1 cut(s) 89
BslFI GGGAC 2 cut(s) 469, 481
BslI CCNNNNNNNGG 1 cut(s) 81
BsmAI GTCTC 1 cut(s) 155
BsmBI CGTCTC 1 cut(s) 155
BsmFI GGGAC 2 cut(s) 469, 481
BsmI GAATGC 1 cut(s) 196
BsnI GGCC 1 cut(s) 650
Bsp1286I GDGCHC 3 cut(s) 35, 89, 589
Bsp143I GATC 1 cut(s) 210
Bsp19I CCATGG 1 cut(s) 222
BspACI CCGC 2 cut(s) 75, 529
BspANI GGCC 1 cut(s) 650
BspCNI CTCAG 1 cut(s) 783
BspLI GGNNCC 7 cut(s) 115, 291, 346, 485, 527, 586, 742
BspMAI CTGCAG 3 cut(s) 130, 510, 681
BspMI ACCTGC 2 cut(s) 133, 365
BspT107I GGYRCC 2 cut(s) 113, 344
BsrDI GCAATG 1 cut(s) 564
BssECI CCNNGG 5 cut(s) 64, 109, 222, 272, 487
BssMI GATC 1 cut(s) 210
BssNI GRCGYC 1 cut(s) 114
BssT1I CCWWGG 2 cut(s) 222, 272
Bst2UI CCWGG 2 cut(s) 111, 349
Bst4CI ACNGT 2 cut(s) 546, 707
Bst6I CTCTTC 1 cut(s) 600
BstACI GRCGYC 1 cut(s) 114
BstC8I GCNNGC 3 cut(s) 172, 510, 693
BstDEI CTNAG 1 cut(s) 791
BstDSI CCRYGG 1 cut(s) 222
BstF5I GGATG 1 cut(s) 232
BstH2I RGCGCY 1 cut(s) 117
BstHHI GCGC 1 cut(s) 116
BstKTI GATC 1 cut(s) 213
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 1 cut(s) 210
BstMWI GCNNNNNNNGC 1 cut(s) 227
BstNI CCWGG 2 cut(s) 111, 349
BstSCI CCNGG 2 cut(s) 109, 347
BstSFI CTRYAG 5 cut(s) 15, 126, 506, 677, 703
BstSLI GKGCMC 1 cut(s) 35
BstV1I GCAGC 2 cut(s) 35, 129
BsuRI GGCC 1 cut(s) 650
BtgI CCRYGG 1 cut(s) 222
BtsCI GGATG 1 cut(s) 232
BtsIMutI CAGTG 1 cut(s) 712
BveI ACCTGC 2 cut(s) 133, 365
Cac8I GCNNGC 3 cut(s) 172, 510, 693
CaiI CAGNNNCTG 1 cut(s) 48
CfoI GCGC 1 cut(s) 116
Cfr13I GGNCC 3 cut(s) 289, 483, 617
CviAII CATG 5 cut(s) 223, 427, 440, 668, 729
DdeI CTNAG 1 cut(s) 791
DinI GGCGCC 1 cut(s) 115
DpnI GATC 1 cut(s) 212
DpnII GATC 1 cut(s) 210
EaeI YGGCCR 1 cut(s) 648
Eam1104I CTCTTC 1 cut(s) 600
EarI CTCTTC 1 cut(s) 600
Eco130I CCWWGG 2 cut(s) 222, 272
Eco24I GRGCYC 1 cut(s) 589
Eco47I GGWCC 3 cut(s) 289, 483, 617
Eco57I CTGAAG 1 cut(s) 630
EcoO109I RGGNCCY 1 cut(s) 483
EcoRII CCWGG 2 cut(s) 109, 347
EcoT14I CCWWGG 2 cut(s) 222, 272
EcoT38I GRGCYC 1 cut(s) 589
EgeI GGCGCC 1 cut(s) 115
EheI GGCGCC 1 cut(s) 115
ErhI CCWWGG 2 cut(s) 222, 272
Esp3I CGTCTC 1 cut(s) 155
FaeI CATG 5 cut(s) 226, 430, 443, 671, 732
FalI AAGNNNNNCTT 2 cut(s) 61, 93
FaqI GGGAC 2 cut(s) 469, 481
FatI CATG 5 cut(s) 222, 426, 439, 667, 728
FauNDI CATATG 1 cut(s) 412
FbaI TGATCA 1 cut(s) 210
Fnu4HI GCNGC 2 cut(s) 49, 143
FokI GGATG 1 cut(s) 239
FriOI GRGCYC 1 cut(s) 589
Fsp4HI GCNGC 2 cut(s) 49, 143
FspBI CTAG 1 cut(s) 273
GlaI GCGC 1 cut(s) 115
GluI GCNGC 2 cut(s) 49, 143
GsaI CCCAGC 2 cut(s) 24, 584
GsuI CTGGAG 2 cut(s) 25, 519
HaeII RGCGCY 1 cut(s) 117
HaeIII GGCC 1 cut(s) 650
HhaI GCGC 1 cut(s) 116
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 5 cut(s) 226, 430, 443, 671, 732
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HinfI GANTC 2 cut(s) 404, 763
HphI GGTGA 3 cut(s) 16, 251, 817
Hpy188I TCNGA 4 cut(s) 68, 250, 365, 858
Hpy188III TCNNGA 3 cut(s) 42, 152, 748
HpyAV CCTTC 3 cut(s) 335, 608, 754
HpyCH4III ACNGT 2 cut(s) 546, 707
HpyCH4IV ACGT 1 cut(s) 433
HpyF10VI GCNNNNNNNGC 1 cut(s) 227
HpyF3I CTNAG 1 cut(s) 791
HpySE526I ACGT 1 cut(s) 433
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 5 cut(s) 226, 430, 443, 671, 732
HspAI GCGC 1 cut(s) 114
KasI GGCGCC 1 cut(s) 113
Ksp22I TGATCA 1 cut(s) 210
Kzo9I GATC 1 cut(s) 210
LmnI GCTCC 3 cut(s) 92, 584, 713
Lsp1109I GCAGC 2 cut(s) 35, 129
LweI GCATC 3 cut(s) 35, 217, 854
MaeI CTAG 1 cut(s) 273
MaeII ACGT 1 cut(s) 433
MaeIII GTNAC 1 cut(s) 377
MalI GATC 1 cut(s) 212
MboI GATC 1 cut(s) 210
MboII GAAGA 3 cut(s) 460, 587, 623
MfeI CAATTG 1 cut(s) 399
MhlI GDGCHC 3 cut(s) 35, 89, 589
MlsI TGGCCA 1 cut(s) 650
MluCI AATT 3 cut(s) 336, 353, 399
MluNI TGGCCA 1 cut(s) 650
Mly113I GGCGCC 1 cut(s) 114
MmeI TCCRAC 4 cut(s) 126, 388, 644, 691
MnlI CCTC 9 cut(s) 49, 74, 116, 189, 313, 497, 599, 786, 796
Mox20I TGGCCA 1 cut(s) 650
MscI TGGCCA 1 cut(s) 650
MseI TTAA 3 cut(s) 120, 279, 468
Msp20I TGGCCA 1 cut(s) 650
MspR9I CCNGG 2 cut(s) 111, 349
MunI CAATTG 1 cut(s) 399
Mva1269I GAATGC 1 cut(s) 196
MvaI CCWGG 2 cut(s) 111, 349
MwoI GCNNNNNNNGC 1 cut(s) 227
NarI GGCGCC 1 cut(s) 114
NcoI CCATGG 1 cut(s) 222
NdeI CATATG 1 cut(s) 412
NdeII GATC 1 cut(s) 210
NlaIII CATG 5 cut(s) 226, 430, 443, 671, 732
NlaIV GGNNCC 7 cut(s) 115, 291, 346, 485, 527, 586, 742
NmuCI GTSAC 1 cut(s) 377
PctI GAATGC 1 cut(s) 196
PfeI GAWTC 2 cut(s) 404, 763
PkrI GCNGC 2 cut(s) 50, 144
PluTI GGCGCC 1 cut(s) 117
PpuMI RGGWCCY 1 cut(s) 483
PshBI ATTAAT 1 cut(s) 279
Psp1406I AACGTT 1 cut(s) 433
Psp5II RGGWCCY 1 cut(s) 483
Psp6I CCWGG 2 cut(s) 109, 347
PspFI CCCAGC 2 cut(s) 20, 580
PspGI CCWGG 2 cut(s) 109, 347
PspN4I GGNNCC 7 cut(s) 115, 291, 346, 485, 527, 586, 742
PspPI GGNCC 3 cut(s) 289, 483, 617
PspPPI RGGWCCY 1 cut(s) 483
PstI CTGCAG 3 cut(s) 130, 510, 681
PstNI CAGNNNCTG 1 cut(s) 48
SaqAI TTAA 3 cut(s) 120, 279, 468
SatI GCNGC 2 cut(s) 49, 143
Sau3AI GATC 1 cut(s) 210
Sau96I GGNCC 3 cut(s) 289, 483, 617
SbfI CCTGCAGG 1 cut(s) 130
ScrFI CCNGG 2 cut(s) 111, 349
SdaI CCTGCAGG 1 cut(s) 130
SduI GDGCHC 3 cut(s) 35, 89, 589
SfaNI GCATC 3 cut(s) 35, 217, 854
SfcI CTRYAG 5 cut(s) 15, 126, 506, 677, 703
SfoI GGCGCC 1 cut(s) 115
SinI GGWCC 3 cut(s) 289, 483, 617
Sse8387I CCTGCAGG 1 cut(s) 130
Sse9I AATT 3 cut(s) 336, 353, 399
SsiI CCGC 2 cut(s) 75, 529
SspDI GGCGCC 1 cut(s) 113
SspMI CTAG 1 cut(s) 273
StyD4I CCNGG 2 cut(s) 109, 347
StyI CCWWGG 2 cut(s) 222, 272
TaaI ACNGT 2 cut(s) 546, 707
TaiI ACGT 1 cut(s) 436
TaqI TCGA 2 cut(s) 153, 462
TaqII GACCGA 1 cut(s) 479
TasI AATT 3 cut(s) 336, 353, 399
TfiI GAWTC 2 cut(s) 404, 763
Tru1I TTAA 3 cut(s) 120, 279, 468
Tru9I TTAA 3 cut(s) 120, 279, 468
TscAI CASTG 1 cut(s) 712
TseFI GTSAC 1 cut(s) 377
TseI GCWGC 2 cut(s) 48, 142
Tsp45I GTSAC 1 cut(s) 377
TspDTI ATGAA 7 cut(s) 222, 348, 429, 538, 652, 684, 769
TspRI CASTG 1 cut(s) 712
VpaK11BI GGWCC 3 cut(s) 289, 483, 617
VspI ATTAAT 1 cut(s) 279
XapI RAATTY 1 cut(s) 353
XmaJI CCTAGG 1 cut(s) 272
XspI CTAG 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.