Rh2BG136200

Protein CHAPERONE-LIKE PROTEIN OF POR1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0010931
Physical Location & Seq
Reverse (-)
11598008 .. 11600820
2813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG136200.1

Sequence Viewer

Length: 774 bp
ATGAGTTCTGTAGCTGGGCTGACTGGTAGTCCATCCAGATGCTGCTTTCCTGTACCTGTGGGAAGTTCCACTTCTCGGTGCAGGAGAGTTTCCAACCTCCCTCGTGCTTGGAAGCCTGCAGAAAACAGTGTGCTGCTTCGTGCCGAAAGAAGTTATTGGGCTGGCGTTACACAAAGATTGAATGCAAGGAAAACTCATGTGATCAAGTGCTCCATGGATGCTTCCTTTGGTGATATGTCAAATGAACCAACTGCTATCTTTCCTAGGATTAATGTGAGGGACCCATACAAACGGCTTGGGATAAGCAGGGAGGCTTCTGAAGAAGAAATTCAAGGTGCAAGGAACTTCCTTATCCGACAGTATGCTGGTCACAAACCAAGTGAAGATGCAATTGAATCAGCATATGACAAAATAATCATGCAGCAGTTTTATGATAGGAAGAACCCAGATATCGACTTTAAGAAAAAGTTTAGGGCAGTCAGTCAGTCCCGTGTTGTGCAGGCTGTGAGAAGTAGGTTCCGCACTCCAGCCACACAGTTCATTATAAAAACTTCCATTGCATTTATAGTGCTGGGAGCCCTCACTTTTCTGTTCCCAACCGAAGAAGGTCCAACCCTTCAAGTAGCCATTTCTTTGTTGGCCACCATATATTTCATACATGAAAGACTACAGAGCAAATGGCGAGCTTTTCTCTACAGGTATGTAAATAATTCCTGTTTGTTATTCTGTATTGGTATAGTTTTTCTCTTGATCTTCTACATAGGACAAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CPP1-like

Protein Analysis

257

Amino Acids

29.24

Weight (kDa)

9.91

Isoelectric Point (pI)

54.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CPP1-like PF11833 104 - 233 1.7e-37 Protein CHAPERONE-LIKE PROTEIN OF POR1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 545
AciI CCGC 1 cut(s) 520
AcoI YGGCCR 1 cut(s) 639
AcsI RAATTY 1 cut(s) 327
AcuI CTGAAG 1 cut(s) 339
AfaI GTAC 1 cut(s) 54
AfiI CCNNNNNNNGG 1 cut(s) 75
AgsI TTSAA 4 cut(s) 181, 332, 395, 620
AhdI GACNNNNNGTC 1 cut(s) 27
AluBI AGCT 2 cut(s) 14, 686
AluI AGCT 2 cut(s) 14, 686
Alw21I GWGCWC 1 cut(s) 212
AlwNI CAGNNNCTG 1 cut(s) 42
AoxI GGCC 1 cut(s) 639
ApeKI GCWGC 3 cut(s) 42, 133, 421
ApoI RAATTY 1 cut(s) 327
AseI ATTAAT 1 cut(s) 270
Asp700I GAANNNNTTC 1 cut(s) 327
AspA2I CCTAGG 1 cut(s) 263
AspS9I GGNCC 2 cut(s) 280, 608
AsuHPI GGTGA 1 cut(s) 242
AvaII GGWCC 2 cut(s) 280, 608
AvrII CCTAGG 1 cut(s) 263
BalI TGGCCA 1 cut(s) 641
BanII GRGCYC 1 cut(s) 580
BauI CACGAG 1 cut(s) 102
Bbv12I GWGCWC 1 cut(s) 212
BbvI GCAGC 3 cut(s) 29, 120, 433
BccI CCATC 1 cut(s) 40
BceAI ACGGC 1 cut(s) 308
BclI TGATCA 1 cut(s) 201
BfaI CTAG 1 cut(s) 264
BfmI CTRYAG 4 cut(s) 9, 117, 668, 694
BisI GCNGC 3 cut(s) 43, 134, 422
BlnI CCTAGG 1 cut(s) 263
BlsI GCNGC 3 cut(s) 44, 135, 423
Bme18I GGWCC 2 cut(s) 280, 608
BmeRI GACNNNNNGTC 1 cut(s) 27
BmgT120I GGNCC 2 cut(s) 280, 608
BmiI GGNNCC 4 cut(s) 281, 282, 518, 577
BmsI GCATC 3 cut(s) 29, 208, 376
BplI GAGNNNNNCTC 2 cut(s) 675, 707
BpmI CTGGAG 1 cut(s) 510
BsaJI CCNNGG 2 cut(s) 213, 263
Bsc4I CCNNNNNNNGG 1 cut(s) 75
Bse1I ACTGG 1 cut(s) 28
Bse3DI GCAATG 1 cut(s) 555
BseDI CCNNGG 2 cut(s) 213, 263
BseGI GGATG 2 cut(s) 32, 223
BseLI CCNNNNNNNGG 1 cut(s) 75
BseMI GCAATG 1 cut(s) 555
BseNI ACTGG 1 cut(s) 28
BseXI GCAGC 3 cut(s) 29, 120, 433
BseYI CCCAGC 2 cut(s) 14, 571
BsgI GTGCAG 2 cut(s) 100, 518
BshFI GGCC 1 cut(s) 641
BsiHKAI GWGCWC 1 cut(s) 212
BslFI GGGAC 2 cut(s) 293, 472
BslI CCNNNNNNNGG 1 cut(s) 75
BsmFI GGGAC 2 cut(s) 293, 472
BsmI GAATGC 1 cut(s) 187
BsnI GGCC 1 cut(s) 641
Bsp1286I GDGCHC 2 cut(s) 212, 580
Bsp143I GATC 2 cut(s) 201, 750
Bsp19I CCATGG 1 cut(s) 213
BspACI CCGC 1 cut(s) 520
BspANI GGCC 1 cut(s) 641
BspLI GGNNCC 4 cut(s) 281, 282, 518, 577
BspMAI CTGCAG 1 cut(s) 121
BsrDI GCAATG 1 cut(s) 555
BsrI ACTGG 1 cut(s) 28
BssECI CCNNGG 2 cut(s) 213, 263
BssMI GATC 2 cut(s) 201, 750
BssSI CACGAG 1 cut(s) 102
BssT1I CCWWGG 2 cut(s) 213, 263
Bst2BI CACGAG 1 cut(s) 102
Bst4CI ACNGT 3 cut(s) 128, 360, 537
BstC8I GCNNGC 4 cut(s) 117, 163, 501, 684
BstDSI CCRYGG 1 cut(s) 213
BstF5I GGATG 2 cut(s) 32, 223
BstKTI GATC 2 cut(s) 204, 753
BstMBI GATC 2 cut(s) 201, 750
BstSFI CTRYAG 4 cut(s) 9, 117, 668, 694
BstV1I GCAGC 3 cut(s) 29, 120, 433
BsuRI GGCC 1 cut(s) 641
BtgI CCRYGG 1 cut(s) 213
BtsCI GGATG 2 cut(s) 32, 223
BtsIMutI CAGTG 1 cut(s) 133
Cac8I GCNNGC 4 cut(s) 117, 163, 501, 684
CaiI CAGNNNCTG 1 cut(s) 42
Cfr13I GGNCC 2 cut(s) 280, 608
Csp6I GTAC 1 cut(s) 53
CviAII CATG 4 cut(s) 197, 214, 418, 659
CviQI GTAC 1 cut(s) 53
DpnI GATC 2 cut(s) 203, 752
DpnII GATC 2 cut(s) 201, 750
DriI GACNNNNNGTC 1 cut(s) 27
EaeI YGGCCR 1 cut(s) 639
Eam1105I GACNNNNNGTC 1 cut(s) 27
Eco130I CCWWGG 2 cut(s) 213, 263
Eco24I GRGCYC 1 cut(s) 580
Eco32I GATATC 1 cut(s) 451
Eco47I GGWCC 2 cut(s) 280, 608
Eco57I CTGAAG 1 cut(s) 339
EcoO109I RGGNCCY 1 cut(s) 280
EcoRV GATATC 1 cut(s) 451
EcoT14I CCWWGG 2 cut(s) 213, 263
EcoT38I GRGCYC 1 cut(s) 580
ErhI CCWWGG 2 cut(s) 213, 263
FaeI CATG 4 cut(s) 200, 217, 421, 662
FalI AAGNNNNNCTT 2 cut(s) 55, 87
FaqI GGGAC 2 cut(s) 293, 472
FatI CATG 4 cut(s) 196, 213, 417, 658
FauNDI CATATG 1 cut(s) 403
FbaI TGATCA 1 cut(s) 201
Fnu4HI GCNGC 3 cut(s) 43, 134, 422
FokI GGATG 2 cut(s) 19, 230
FriOI GRGCYC 1 cut(s) 580
Fsp4HI GCNGC 3 cut(s) 43, 134, 422
FspBI CTAG 1 cut(s) 264
GluI GCNGC 3 cut(s) 43, 134, 422
GsaI CCCAGC 2 cut(s) 18, 575
GsuI CTGGAG 1 cut(s) 510
HaeIII GGCC 1 cut(s) 641
Hin1II CATG 4 cut(s) 200, 217, 421, 662
HinfI GANTC 1 cut(s) 395
HphI GGTGA 1 cut(s) 242
Hpy188I TCNGA 2 cut(s) 319, 356
Hpy188III TCNNGA 2 cut(s) 36, 748
HpyAV CCTTC 2 cut(s) 599, 626
HpyCH4III ACNGT 3 cut(s) 128, 360, 537
HpyCH4V TGCA 8 cut(s) 81, 119, 185, 338, 389, 421, 499, 560
Hsp92II CATG 4 cut(s) 200, 217, 421, 662
KflI GGGWCCC 1 cut(s) 280
Ksp22I TGATCA 1 cut(s) 201
Kzo9I GATC 2 cut(s) 201, 750
LmnI GCTCC 2 cut(s) 215, 575
Lsp1109I GCAGC 3 cut(s) 29, 120, 433
LweI GCATC 3 cut(s) 29, 208, 376
MaeI CTAG 1 cut(s) 264
MaeIII GTNAC 2 cut(s) 166, 368
MalI GATC 2 cut(s) 203, 752
MboI GATC 2 cut(s) 201, 750
MboII GAAGA 6 cut(s) 332, 335, 395, 451, 614, 745
MfeI CAATTG 1 cut(s) 390
MhlI GDGCHC 2 cut(s) 212, 580
MlsI TGGCCA 1 cut(s) 641
MluCI AATT 3 cut(s) 327, 390, 709
MluNI TGGCCA 1 cut(s) 641
MmeI TCCRAC 3 cut(s) 117, 379, 635
MnlI CCTC 5 cut(s) 107, 111, 270, 304, 590
Mox20I TGGCCA 1 cut(s) 641
MroXI GAANNNNTTC 1 cut(s) 327
MscI TGGCCA 1 cut(s) 641
MseI TTAA 2 cut(s) 270, 459
MslI CAYNNNNRTG 1 cut(s) 37
Msp20I TGGCCA 1 cut(s) 641
MunI CAATTG 1 cut(s) 390
Mva1269I GAATGC 1 cut(s) 187
NcoI CCATGG 1 cut(s) 213
NdeI CATATG 1 cut(s) 403
NdeII GATC 2 cut(s) 201, 750
NlaIII CATG 4 cut(s) 200, 217, 421, 662
NlaIV GGNNCC 4 cut(s) 281, 282, 518, 577
NmuCI GTSAC 1 cut(s) 368
PctI GAATGC 1 cut(s) 187
PdmI GAANNNNTTC 1 cut(s) 327
PfeI GAWTC 1 cut(s) 395
PkrI GCNGC 3 cut(s) 44, 135, 423
PpuMI RGGWCCY 1 cut(s) 280
PshBI ATTAAT 1 cut(s) 270
PsiI TTATAA 1 cut(s) 545
Psp5II RGGWCCY 1 cut(s) 280
PspFI CCCAGC 2 cut(s) 14, 571
PspN4I GGNNCC 4 cut(s) 281, 282, 518, 577
PspPI GGNCC 2 cut(s) 280, 608
PspPPI RGGWCCY 1 cut(s) 280
PstI CTGCAG 1 cut(s) 121
PstNI CAGNNNCTG 1 cut(s) 42
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
RseI CAYNNNNRTG 1 cut(s) 37
SaqAI TTAA 2 cut(s) 270, 459
SatI GCNGC 3 cut(s) 43, 134, 422
Sau3AI GATC 2 cut(s) 201, 750
Sau96I GGNCC 2 cut(s) 280, 608
SduI GDGCHC 2 cut(s) 212, 580
SetI ASST 8 cut(s) 16, 58, 99, 337, 518, 610, 688, 701
SfaNI GCATC 3 cut(s) 29, 208, 376
SfcI CTRYAG 4 cut(s) 9, 117, 668, 694
SinI GGWCC 2 cut(s) 280, 608
SmiMI CAYNNNNRTG 1 cut(s) 37
Sse9I AATT 3 cut(s) 327, 390, 709
SsiI CCGC 1 cut(s) 520
SspMI CTAG 1 cut(s) 264
StyI CCWWGG 2 cut(s) 213, 263
TaaI ACNGT 3 cut(s) 128, 360, 537
TaqI TCGA 1 cut(s) 453
TasI AATT 3 cut(s) 327, 390, 709
TfiI GAWTC 1 cut(s) 395
Tru1I TTAA 2 cut(s) 270, 459
Tru9I TTAA 2 cut(s) 270, 459
TscAI CASTG 1 cut(s) 133
TseFI GTSAC 1 cut(s) 368
TseI GCWGC 3 cut(s) 42, 133, 421
Tsp45I GTSAC 1 cut(s) 368
TspDTI ATGAA 4 cut(s) 258, 529, 643, 675
TspRI CASTG 1 cut(s) 133
VpaK11BI GGWCC 2 cut(s) 280, 608
VspI ATTAAT 1 cut(s) 270
XapI RAATTY 1 cut(s) 327
XcmI CCANNNNNNNNNTGG 1 cut(s) 634
XmaJI CCTAGG 1 cut(s) 263
XmnI GAANNNNTTC 1 cut(s) 327
XspI CTAG 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.