Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0010931

Physical Location & Seq

Genomic Coordinates Reverse (-)

11227248 .. 11230273

Gene Structure 3026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016920

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGAGTTCTGTAGCTGGGCTGACTGGTAGTCCATCCAGATGCTGCTTTCAAGTACCTGTGGGAAGTTCCGCTTCTCGGTGCAGGAGAGTTTCCAACCTCCCTCGTGCTTGGAAGCCTGCAGAAAAGAATGTGCTGCTTCGTGTCGAAGGAAGTTATTGGGCTGGCGTTACACAAAGATTGAATGCAAGGAAAACTCATGTGATCAAGTGTTCCATGGATGCTTCCTTTGGTGATATGTCAAATGAACCAACTGCTATCTTTCCTAGGATTAATGTGAGGGACCCATACAAACGGCTTGGGATAAGCAGGGAGGCTTCTGAAGAAGAAATTCAAGGTGCAAGGAACTTCCTTATCCGACAGTATGCTGGTCACAAACCAAGTGAAGATGCAATTGAATCAGCATATGACAAAATAATCATGCAGCAGTTTTATGATAGGAAGAACCCAAAAATCGACTTTAAGAAAAAGTTTAGGGCAGTCAGTCAGTCCCGTGTTGTGCAGGCTGTGAGAAGTAGGTTCCGCACTCCAGCCACACAGTTCATTATAAAAACTGCCATTGCATTTATAGTGCTGGGAGCCCTCACTTTTCTGTTCCCAACCGAAGAAGGTCCAACCCTTCAAGTAGCCATTTCTTTGTTGGCCACAATATATTTCATACATGAAAGACTACAGAGCAAATGGCGAGCTTTTCTCTACAGTGTTGGAGCATTTGTTTTCTCATGGCTGGTGGGAACTTTCTTGATGGTGGCTGTGATTCCACCCATACCTTTCATTAAAGGACTAAGGAGTTTTGAGCGAAACAATTCATCCCTTACCAGCTCCGACCATATTTGTACTCAAACTTTTCGGCGCTACATCTGGAACCCTCTGTCCTCTCACCTAACCCTGATAATCAATGAGTATTCCCGCCTGTCACACAACCAAGTCTTTGAAGCTGCGGAGATCTACCTTCCAACCAAGATTGGTCCCTCCATCGACTGTCTCCAAGCCAGCAAAACACCTCGACAGAAGAAAATCCAACTTTCCATGGAAAAGGAGCAAGAAGTTGAAGACACCTTCGAAAACATCAAACTCAACAGGCGTTACTCGTGCGTTGAACTGTTTAACTACAACAACAGCTACCCTACAACGAACTCATCAGGTATTCACAAGCGTCACTTTGAGCTGACATTCCACAAGAACCACAAAGCAAAAGTGACCGAGTCTTACTTGCCATATGTGCTCGAGCAGGCTAAAGCTATCAAAGAAAAAGAAGCTTTATACCCGTCACGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CPP1-like

Protein Analysis

425

Amino Acids

48.57

Weight (kDa)

9.75

Isoelectric Point (pI)

52.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CPP1-like	PF11833	104 - 264	4.4e-46	Protein CHAPERONE-LIKE PROTEIN OF POR1-like
AAA_assoc	PF14363	279 - 359	1.4e-17	Domain associated at C-terminal with AAA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010931)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51140 AT3G51140
fragaria_vesca	FvH4_1g12151 FvH4_1g12151 FvH4_1g12151 FvH4_1g12151
malus_domestica	MD02G1110900.v1.1 MD15G1248800.v1.1
prunus_persica	Prupe.7G165300_v2.0.a1 Prupe.7G165300_v2.0.a1
pyrus_communis	pycom02g10680 pycom15g21900
rosa_chinensis	RchiOBHm_Chr2g0099891
rosa_laevigata	RLG00000016920
rosa_roxburghii	Rroxscaffold_2G00142750
rosa_samantha	Rh2AG132800 Rh2BG136200 Rh2CG137900 Rh2DG138300
rosa_wichuraiana	Rw2G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	545
AciI	CCGC	4 cut(s)	69, 520, 907, 938
AcoI	YGGCCR	1 cut(s)	639
AcsI	RAATTY	1 cut(s)	327
AcuI	CTGAAG	1 cut(s)	339
AfaI	GTAC	2 cut(s)	54, 835
AfiI	CCNNNNNNNGG	1 cut(s)	75
AgsI	TTSAA	8 cut(s)	50, 181, 332, 395, 620, 932, 1049, 1097
AhdI	GACNNNNNGTC	1 cut(s)	27
AloI	GAACNNNNNNTCC	2 cut(s)	854, 886
AluBI	AGCT	8 cut(s)	14, 686, 819, 935, 1119, 1165, 1238, 1256
AluI	AGCT	8 cut(s)	14, 686, 819, 935, 1119, 1165, 1238, 1256
Alw21I	GWGCWC	1 cut(s)	1224
Alw26I	GTCTC	1 cut(s)	986
AlwNI	CAGNNNCTG	1 cut(s)	42
Ama87I	CYCGRG	1 cut(s)	1223
AoxI	GGCC	1 cut(s)	639
ApeKI	GCWGC	4 cut(s)	42, 133, 421, 935
ApoI	RAATTY	1 cut(s)	327
AseI	ATTAAT	1 cut(s)	270
Asp700I	GAANNNNTTC	2 cut(s)	327, 802
AspA2I	CCTAGG	1 cut(s)	263
AspLEI	GCGC	1 cut(s)	852
AspS9I	GGNCC	3 cut(s)	280, 608, 965
AsuHPI	GGTGA	2 cut(s)	242, 869
AsuII	TTCGAA	1 cut(s)	1059
AvaI	CYCGRG	1 cut(s)	1223
AvaII	GGWCC	3 cut(s)	280, 608, 965
AvrII	CCTAGG	1 cut(s)	263
BalI	TGGCCA	1 cut(s)	641
BanII	GRGCYC	1 cut(s)	580
BauI	CACGAG	2 cut(s)	102, 1087
BbsI	GAAGAC	1 cut(s)	1056
Bbv12I	GWGCWC	1 cut(s)	1224
BbvI	GCAGC	4 cut(s)	29, 120, 433, 922
BccI	CCATC	3 cut(s)	40, 736, 980
BceAI	ACGGC	1 cut(s)	308
BclI	TGATCA	1 cut(s)	201
BcoDI	GTCTC	1 cut(s)	986
BfaI	CTAG	1 cut(s)	264
BfmI	CTRYAG	4 cut(s)	9, 117, 668, 694
BfoI	RGCGCY	1 cut(s)	853
BglII	AGATCT	1 cut(s)	942
BisI	GCNGC	4 cut(s)	43, 134, 422, 936
BlnI	CCTAGG	1 cut(s)	263
BlsI	GCNGC	4 cut(s)	44, 135, 423, 937
Bme18I	GGWCC	3 cut(s)	280, 608, 965
BmeRI	GACNNNNNGTC	1 cut(s)	27
BmeT110I	CYCGRG	1 cut(s)	1223
BmgT120I	GGNCC	3 cut(s)	280, 608, 965
BmiI	GGNNCC	6 cut(s)	281, 282, 518, 577, 863, 967
BmsI	GCATC	3 cut(s)	29, 208, 376
BpiI	GAAGAC	1 cut(s)	1056
BplI	GAGNNNNNCTC	2 cut(s)	675, 707
BpmI	CTGGAG	1 cut(s)	510
Bpu14I	TTCGAA	1 cut(s)	1059
BsaJI	CCNNGG	3 cut(s)	213, 263, 1026
BsaXI	ACNNNNNCTCC	2 cut(s)	696, 726
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse1I	ACTGG	1 cut(s)	28
Bse3DI	GCAATG	1 cut(s)	555
BseDI	CCNNGG	3 cut(s)	213, 263, 1026
BseGI	GGATG	3 cut(s)	32, 223, 806
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseMI	GCAATG	1 cut(s)	555
BseNI	ACTGG	1 cut(s)	28
BseXI	GCAGC	4 cut(s)	29, 120, 433, 922
BseYI	CCCAGC	2 cut(s)	14, 571
BsgI	GTGCAG	2 cut(s)	100, 518
BshFI	GGCC	1 cut(s)	641
BsiHKAI	GWGCWC	1 cut(s)	1224
BsiHKCI	CYCGRG	1 cut(s)	1223
BslFI	GGGAC	3 cut(s)	293, 472, 951
BslI	CCNNNNNNNGG	1 cut(s)	75
BsmAI	GTCTC	1 cut(s)	986
BsmFI	GGGAC	3 cut(s)	293, 472, 951
BsmI	GAATGC	1 cut(s)	187
BsnI	GGCC	1 cut(s)	641
BsoBI	CYCGRG	1 cut(s)	1223
Bsp119I	TTCGAA	1 cut(s)	1059
Bsp1286I	GDGCHC	2 cut(s)	580, 1224
Bsp143I	GATC	2 cut(s)	201, 942
Bsp19I	CCATGG	2 cut(s)	213, 1026
BspACI	CCGC	4 cut(s)	69, 520, 907, 938
BspANI	GGCC	1 cut(s)	641
BspLI	GGNNCC	6 cut(s)	281, 282, 518, 577, 863, 967
BspMAI	CTGCAG	1 cut(s)	121
BspT104I	TTCGAA	1 cut(s)	1059
BsrDI	GCAATG	1 cut(s)	555
BsrI	ACTGG	1 cut(s)	28
BssECI	CCNNGG	3 cut(s)	213, 263, 1026
BssMI	GATC	2 cut(s)	201, 942
BssSI	CACGAG	2 cut(s)	102, 1087
BssT1I	CCWWGG	3 cut(s)	213, 263, 1026
Bst2BI	CACGAG	2 cut(s)	102, 1087
Bst4CI	ACNGT	6 cut(s)	360, 537, 698, 980, 1101, 1272
BstBI	TTCGAA	1 cut(s)	1059
BstC8I	GCNNGC	6 cut(s)	117, 163, 501, 684, 991, 1230
BstDEI	CTNAG	1 cut(s)	782
BstDSI	CCRYGG	2 cut(s)	213, 1026
BstF5I	GGATG	3 cut(s)	32, 223, 806
BstH2I	RGCGCY	1 cut(s)	853
BstHHI	GCGC	1 cut(s)	852
BstKTI	GATC	2 cut(s)	204, 945
BstMAI	GTCTC	1 cut(s)	986
BstMBI	GATC	2 cut(s)	201, 942
BstMWI	GCNNNNNNNGC	1 cut(s)	1219
BstSFI	CTRYAG	4 cut(s)	9, 117, 668, 694
BstV1I	GCAGC	4 cut(s)	29, 120, 433, 922
BstV2I	GAAGAC	1 cut(s)	1056
BstX2I	RGATCY	1 cut(s)	942
BstYI	RGATCY	1 cut(s)	942
BsuRI	GGCC	1 cut(s)	641
BtgI	CCRYGG	2 cut(s)	213, 1026
BtsCI	GGATG	3 cut(s)	32, 223, 806
BtsIMutI	CAGTG	1 cut(s)	703
Cac8I	GCNNGC	6 cut(s)	117, 163, 501, 684, 991, 1230
CaiI	CAGNNNCTG	1 cut(s)	42
CfoI	GCGC	1 cut(s)	852
Cfr13I	GGNCC	3 cut(s)	280, 608, 965
CseI	GACGC	1 cut(s)	1142
Csp6I	GTAC	2 cut(s)	53, 834
CviAII	CATG	6 cut(s)	197, 214, 418, 659, 720, 1027
CviQI	GTAC	2 cut(s)	53, 834
DdeI	CTNAG	1 cut(s)	782
DpnI	GATC	2 cut(s)	203, 944
DpnII	GATC	2 cut(s)	201, 942
DriI	GACNNNNNGTC	1 cut(s)	27
EaeI	YGGCCR	1 cut(s)	639
Eam1105I	GACNNNNNGTC	1 cut(s)	27
Eco130I	CCWWGG	3 cut(s)	213, 263, 1026
Eco24I	GRGCYC	1 cut(s)	580
Eco47I	GGWCC	3 cut(s)	280, 608, 965
Eco57I	CTGAAG	1 cut(s)	339
Eco88I	CYCGRG	1 cut(s)	1223
EcoO109I	RGGNCCY	1 cut(s)	280
EcoT14I	CCWWGG	3 cut(s)	213, 263, 1026
EcoT38I	GRGCYC	1 cut(s)	580
ErhI	CCWWGG	3 cut(s)	213, 263, 1026
FaeI	CATG	6 cut(s)	200, 217, 421, 662, 723, 1030
FalI	AAGNNNNNCTT	4 cut(s)	55, 87, 1142, 1174
FaqI	GGGAC	3 cut(s)	293, 472, 951
FatI	CATG	6 cut(s)	196, 213, 417, 658, 719, 1026
FauI	CCCGC	1 cut(s)	914
FauNDI	CATATG	2 cut(s)	403, 1216
FbaI	TGATCA	1 cut(s)	201
Fnu4HI	GCNGC	4 cut(s)	43, 134, 422, 936
FokI	GGATG	3 cut(s)	19, 230, 793
FriOI	GRGCYC	1 cut(s)	580
Fsp4HI	GCNGC	4 cut(s)	43, 134, 422, 936
FspBI	CTAG	1 cut(s)	264
GlaI	GCGC	1 cut(s)	851
GluI	GCNGC	4 cut(s)	43, 134, 422, 936
GsaI	CCCAGC	2 cut(s)	18, 575
GsuI	CTGGAG	1 cut(s)	510
HaeII	RGCGCY	1 cut(s)	853
HaeIII	GGCC	1 cut(s)	641
HgaI	GACGC	1 cut(s)	1142
HhaI	GCGC	1 cut(s)	852
Hin1II	CATG	6 cut(s)	200, 217, 421, 662, 723, 1030
Hin6I	GCGC	1 cut(s)	850
HinP1I	GCGC	1 cut(s)	850
HindIII	AAGCTT	1 cut(s)	1254
HinfI	GANTC	3 cut(s)	395, 754, 1202
HphI	GGTGA	2 cut(s)	242, 869
Hpy188I	TCNGA	3 cut(s)	319, 356, 823
Hpy188III	TCNNGA	3 cut(s)	36, 739, 859
HpyAV	CCTTC	5 cut(s)	140, 599, 626, 959, 1066
HpyCH4III	ACNGT	6 cut(s)	360, 537, 698, 980, 1101, 1272
HpyCH4V	TGCA	8 cut(s)	81, 119, 185, 338, 389, 421, 499, 560
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1219
HpyF3I	CTNAG	1 cut(s)	782
Hsp92II	CATG	6 cut(s)	200, 217, 421, 662, 723, 1030
HspAI	GCGC	1 cut(s)	850
KflI	GGGWCCC	1 cut(s)	280
Ksp22I	TGATCA	1 cut(s)	201
Kzo9I	GATC	2 cut(s)	201, 942
LmnI	GCTCC	4 cut(s)	575, 704, 824, 1036
Lsp1109I	GCAGC	4 cut(s)	29, 120, 433, 922
LweI	GCATC	3 cut(s)	29, 208, 376
MaeI	CTAG	1 cut(s)	264
MaeIII	GTNAC	7 cut(s)	166, 368, 912, 1082, 1154, 1195, 1266
MalI	GATC	2 cut(s)	203, 944
MboI	GATC	2 cut(s)	201, 942
MboII	GAAGA	7 cut(s)	332, 335, 395, 451, 614, 1021, 1061
MfeI	CAATTG	1 cut(s)	390
MflI	RGATCY	1 cut(s)	942
MhlI	GDGCHC	2 cut(s)	580, 1224
MlsI	TGGCCA	1 cut(s)	641
MluCI	AATT	3 cut(s)	327, 390, 802
MluNI	TGGCCA	1 cut(s)	641
MlyI	GAGTC	1 cut(s)	1211
MmeI	TCCRAC	7 cut(s)	117, 379, 635, 682, 846, 977, 1042
MnlI	CCTC	9 cut(s)	107, 111, 270, 304, 590, 876, 883, 979, 1011
Mox20I	TGGCCA	1 cut(s)	641
MroXI	GAANNNNTTC	2 cut(s)	327, 802
MscI	TGGCCA	1 cut(s)	641
MseI	TTAA	4 cut(s)	270, 459, 774, 1104
MslI	CAYNNNNRTG	1 cut(s)	37
Msp20I	TGGCCA	1 cut(s)	641
MunI	CAATTG	1 cut(s)	390
Mva1269I	GAATGC	1 cut(s)	187
MwoI	GCNNNNNNNGC	1 cut(s)	1219
NcoI	CCATGG	2 cut(s)	213, 1026
NdeI	CATATG	2 cut(s)	403, 1216
NdeII	GATC	2 cut(s)	201, 942
NlaIII	CATG	6 cut(s)	200, 217, 421, 662, 723, 1030
NlaIV	GGNNCC	6 cut(s)	281, 282, 518, 577, 863, 967
NmuCI	GTSAC	5 cut(s)	368, 912, 1154, 1195, 1266
NspV	TTCGAA	1 cut(s)	1059
PaeR7I	CTCGAG	1 cut(s)	1223
PctI	GAATGC	1 cut(s)	187
PdmI	GAANNNNTTC	2 cut(s)	327, 802
PfeI	GAWTC	2 cut(s)	395, 754
PflFI	GACNNNGTC	1 cut(s)	1201
PkrI	GCNGC	4 cut(s)	44, 135, 423, 937
PleI	GAGTC	1 cut(s)	1210
PpsI	GAGTC	1 cut(s)	1210
PpuMI	RGGWCCY	1 cut(s)	280
PshBI	ATTAAT	1 cut(s)	270
PsiI	TTATAA	1 cut(s)	545
Psp5II	RGGWCCY	1 cut(s)	280
PspFI	CCCAGC	2 cut(s)	14, 571
PspN4I	GGNNCC	6 cut(s)	281, 282, 518, 577, 863, 967
PspPI	GGNCC	3 cut(s)	280, 608, 965
PspPPI	RGGWCCY	1 cut(s)	280
PspXI	VCTCGAGB	1 cut(s)	1223
PstI	CTGCAG	1 cut(s)	121
PstNI	CAGNNNCTG	1 cut(s)	42
PsuI	RGATCY	1 cut(s)	942
PsyI	GACNNNGTC	1 cut(s)	1201
RsaI	GTAC	2 cut(s)	54, 835
RsaNI	GTAC	2 cut(s)	53, 834
RseI	CAYNNNNRTG	1 cut(s)	37
SaqAI	TTAA	4 cut(s)	270, 459, 774, 1104
SatI	GCNGC	4 cut(s)	43, 134, 422, 936
Sau3AI	GATC	2 cut(s)	201, 942
Sau96I	GGNCC	3 cut(s)	280, 608, 965
SchI	GAGTC	1 cut(s)	1211
SduI	GDGCHC	2 cut(s)	580, 1224
SfaNI	GCATC	3 cut(s)	29, 208, 376
SfcI	CTRYAG	4 cut(s)	9, 117, 668, 694
Sfr274I	CTCGAG	1 cut(s)	1223
SfuI	TTCGAA	1 cut(s)	1059
SinI	GGWCC	3 cut(s)	280, 608, 965
SlaI	CTCGAG	1 cut(s)	1223
SmiMI	CAYNNNNRTG	1 cut(s)	37
SmlI	CTYRAG	1 cut(s)	1223
SmoI	CTYRAG	1 cut(s)	1223
Sse9I	AATT	3 cut(s)	327, 390, 802
SsiI	CCGC	4 cut(s)	69, 520, 907, 938
SspMI	CTAG	1 cut(s)	264
StyI	CCWWGG	3 cut(s)	213, 263, 1026
TaaI	ACNGT	6 cut(s)	360, 537, 698, 980, 1101, 1272
TaqI	TCGA	6 cut(s)	144, 453, 975, 1003, 1059, 1224
TaqII	GACCGA	1 cut(s)	1214
TasI	AATT	3 cut(s)	327, 390, 802
TatI	WGTACW	1 cut(s)	833
TfiI	GAWTC	2 cut(s)	395, 754
Tru1I	TTAA	4 cut(s)	270, 459, 774, 1104
Tru9I	TTAA	4 cut(s)	270, 459, 774, 1104
TscAI	CASTG	1 cut(s)	703
TseFI	GTSAC	5 cut(s)	368, 912, 1154, 1195, 1266
TseI	GCWGC	4 cut(s)	42, 133, 421, 935
Tsp45I	GTSAC	5 cut(s)	368, 912, 1154, 1195, 1266
TspDTI	ATGAA	6 cut(s)	258, 529, 643, 675, 760, 795
TspRI	CASTG	1 cut(s)	703
Tth111I	GACNNNGTC	1 cut(s)	1201
VpaK11BI	GGWCC	3 cut(s)	280, 608, 965
VspI	ATTAAT	1 cut(s)	270
XapI	RAATTY	1 cut(s)	327
XcmI	CCANNNNNNNNNTGG	1 cut(s)	634
XhoI	CTCGAG	1 cut(s)	1223
XmaJI	CCTAGG	1 cut(s)	263
XmnI	GAANNNNTTC	2 cut(s)	327, 802
XspI	CTAG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.