MD02G1110900.v1.1

Protein CHAPERONE-LIKE PROTEIN OF POR1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0010931
Physical Location & Seq
Reverse (-)
9016402 .. 9019035
2634 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1110900.v1.1.491

Sequence Viewer

Length: 849 bp
ATGACTTCTGTTTCGGGATTGACTGGTAGTCCCTCCAGATTCTGCTTCCAAATTCCAGCACGAAGTTCTGGTTCACTACGAGGGCGAGTTTCGAATTTCCCTCATGGTTGGAAGCCTGCAGGAAAGAATGAGCTACTTCGTGTGGAAAGAAGTTATTGGACTGGCTTTGCACAAAGGTTGAACGCACGGAAAACACATCTGATCAAGTTTGCCGTGGATGCATCCTACGGCGATATGTCCAATGAACCAACTGCTATTTTCCCTAGGATTAATGTGAGGGACCCCTACAAACGACTTGGAATAAGCAGGGAGGCTTCGGAAGATGAGATTCAAGGTGCAAGGAACTTCCTTATCCGACAATATGCAGGTCACAAACCAAGTGTAGATGCAATTGAATCAGCCCATGACAAAATAATCATGCAGAAGTTCTATGACAGGAAGAACCCCAAAATTGACTTTAAGAAAAAGTACAGGGAAGTCAATCAGTCCCGTGTTGTTCAGGCTGTGAGAAATAGGTTCCGAACTCCGTCCACAATTTTCATTGTAAAAACGTCCATTGCATTTCTAGTGCTTGCAGCTCTCACTGTTCTATTTCCAACCGAAGAAGGTCCAACCCTTCAGGTTGCCCTTTCCTTGTTGGCCACCATCTACTTTGTACATGACAGGCTGAAGAGCAAATTACGAGCTTTTCTCTACAGTGCTGGATCATTTGCTTTCTCATGGCTTTTCGGAACCTTCTTGATGGTGTCTGTGGTTCCACCTCTACTGAAAGGACCAAGGAGTTTCGAGGTGACAACGTCATTGATAACCTATGTGCTACTCTGGGTCTCGTCAACCTATCTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CPP1-like

Protein Analysis

283

Amino Acids

31.97

Weight (kDa)

10.3

Isoelectric Point (pI)

33.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CPP1-like PF11833 104 - 281 1e-51 Protein CHAPERONE-LIKE PROTEIN OF POR1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 356
AclWI GGATC 1 cut(s) 712
AcoI YGGCCR 1 cut(s) 639
AcsI RAATTY 2 cut(s) 51, 94
AcuI CTGAAG 2 cut(s) 602, 689
AfaI GTAC 2 cut(s) 470, 657
AgsI TTSAA 3 cut(s) 181, 332, 395
AhdI GACNNNNNGTC 1 cut(s) 27
AluBI AGCT 3 cut(s) 133, 578, 686
AluI AGCT 3 cut(s) 133, 578, 686
Alw26I GTCTC 1 cut(s) 832
AlwI GGATC 1 cut(s) 712
AlwNI CAGNNNCTG 1 cut(s) 42
AoxI GGCC 1 cut(s) 639
ApeKI GCWGC 1 cut(s) 575
ApoI RAATTY 2 cut(s) 51, 94
ArsI GACNNNNNNTTYG 1 cut(s) 27
AseI ATTAAT 1 cut(s) 270
AspA2I CCTAGG 1 cut(s) 263
AspS9I GGNCC 3 cut(s) 280, 608, 773
AsuHPI GGTGA 1 cut(s) 802
AsuII TTCGAA 1 cut(s) 92
AvaII GGWCC 3 cut(s) 280, 608, 773
AvrII CCTAGG 1 cut(s) 263
BalI TGGCCA 1 cut(s) 641
BbvI GCAGC 1 cut(s) 587
BccI CCATC 2 cut(s) 653, 736
BceAI ACGGC 2 cut(s) 197, 244
BclI TGATCA 1 cut(s) 201
BcoDI GTCTC 1 cut(s) 832
BfaI CTAG 2 cut(s) 264, 566
BfmI CTRYAG 2 cut(s) 117, 694
BfuAI ACCTGC 1 cut(s) 356
BisI GCNGC 1 cut(s) 576
BlnI CCTAGG 1 cut(s) 263
BlsI GCNGC 1 cut(s) 577
Bme18I GGWCC 3 cut(s) 280, 608, 773
BmeRI GACNNNNNGTC 1 cut(s) 27
BmgT120I GGNCC 3 cut(s) 280, 608, 773
BmiI GGNNCC 5 cut(s) 281, 282, 518, 733, 756
BmsI GCATC 3 cut(s) 208, 230, 376
BplI GAGNNNNNCTC 2 cut(s) 675, 707
BpmI CTGGAG 1 cut(s) 19
Bpu14I TTCGAA 1 cut(s) 92
BpuEI CTTGAG 1 cut(s) 827
BsaI GGTCTC 1 cut(s) 832
BsaJI CCNNGG 3 cut(s) 213, 263, 776
Bse1I ACTGG 2 cut(s) 28, 166
Bse3DI GCAATG 1 cut(s) 555
BseDI CCNNGG 3 cut(s) 213, 263, 776
BseGI GGATG 2 cut(s) 221, 223
BseMI GCAATG 1 cut(s) 555
BseNI ACTGG 2 cut(s) 28, 166
BseXI GCAGC 1 cut(s) 587
BshFI GGCC 1 cut(s) 641
BslFI GGGAC 3 cut(s) 15, 293, 472
BsmAI GTCTC 1 cut(s) 832
BsmFI GGGAC 3 cut(s) 15, 293, 472
BsnI GGCC 1 cut(s) 641
Bso31I GGTCTC 1 cut(s) 832
Bsp119I TTCGAA 1 cut(s) 92
Bsp1407I TGTACA 1 cut(s) 655
Bsp143I GATC 2 cut(s) 201, 704
BspANI GGCC 1 cut(s) 641
BspLI GGNNCC 5 cut(s) 281, 282, 518, 733, 756
BspMAI CTGCAG 1 cut(s) 121
BspMI ACCTGC 1 cut(s) 356
BspPI GGATC 1 cut(s) 712
BspQI GCTCTTC 1 cut(s) 665
BspT104I TTCGAA 1 cut(s) 92
BspTNI GGTCTC 1 cut(s) 832
BsrDI GCAATG 1 cut(s) 555
BsrGI TGTACA 1 cut(s) 655
BsrI ACTGG 2 cut(s) 28, 166
BssECI CCNNGG 3 cut(s) 213, 263, 776
BssMI GATC 2 cut(s) 201, 704
BssT1I CCWWGG 2 cut(s) 263, 776
Bst4CI ACNGT 2 cut(s) 586, 698
Bst6I CTCTTC 1 cut(s) 665
BstAUI TGTACA 1 cut(s) 655
BstBI TTCGAA 1 cut(s) 92
BstC8I GCNNGC 2 cut(s) 117, 573
BstDSI CCRYGG 1 cut(s) 213
BstF5I GGATG 2 cut(s) 221, 223
BstKTI GATC 2 cut(s) 204, 707
BstMAI GTCTC 1 cut(s) 832
BstMBI GATC 2 cut(s) 201, 704
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstSFI CTRYAG 2 cut(s) 117, 694
BstV1I GCAGC 1 cut(s) 587
BsuRI GGCC 1 cut(s) 641
BtgI CCRYGG 1 cut(s) 213
BtsCI GGATG 2 cut(s) 221, 223
BtsIMutI CAGTG 2 cut(s) 582, 703
BveI ACCTGC 1 cut(s) 356
Cac8I GCNNGC 2 cut(s) 117, 573
CaiI CAGNNNCTG 1 cut(s) 42
Cfr13I GGNCC 3 cut(s) 280, 608, 773
Csp6I GTAC 2 cut(s) 469, 656
CviAII CATG 5 cut(s) 104, 404, 418, 659, 720
CviQI GTAC 2 cut(s) 469, 656
DpnI GATC 2 cut(s) 203, 706
DpnII GATC 2 cut(s) 201, 704
DriI GACNNNNNGTC 1 cut(s) 27
EaeI YGGCCR 1 cut(s) 639
Eam1104I CTCTTC 1 cut(s) 665
Eam1105I GACNNNNNGTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 665
Eco130I CCWWGG 2 cut(s) 263, 776
Eco31I GGTCTC 1 cut(s) 832
Eco47I GGWCC 3 cut(s) 280, 608, 773
Eco57I CTGAAG 2 cut(s) 602, 689
EcoO109I RGGNCCY 1 cut(s) 280
EcoT14I CCWWGG 2 cut(s) 263, 776
EcoT22I ATGCAT 1 cut(s) 223
ErhI CCWWGG 2 cut(s) 263, 776
FaeI CATG 5 cut(s) 107, 407, 421, 662, 723
FaiI YATR 9 cut(s) 105, 236, 363, 405, 419, 432, 660, 721, 813
FaqI GGGAC 3 cut(s) 15, 293, 472
FatI CATG 5 cut(s) 103, 403, 417, 658, 719
FbaI TGATCA 1 cut(s) 201
Fnu4HI GCNGC 1 cut(s) 576
FokI GGATG 2 cut(s) 208, 230
Fsp4HI GCNGC 1 cut(s) 576
FspBI CTAG 2 cut(s) 264, 566
GluI GCNGC 1 cut(s) 576
GsuI CTGGAG 1 cut(s) 19
HaeIII GGCC 1 cut(s) 641
Hin1II CATG 5 cut(s) 107, 407, 421, 662, 723
HincII GTYRAC 1 cut(s) 834
HindII GTYRAC 1 cut(s) 834
HinfI GANTC 3 cut(s) 39, 328, 395
HphI GGTGA 1 cut(s) 802
Hpy166II GTNNAC 3 cut(s) 74, 531, 834
Hpy188I TCNGA 5 cut(s) 201, 319, 356, 521, 731
Hpy188III TCNNGA 3 cut(s) 15, 36, 739
Hpy8I GTNNAC 3 cut(s) 74, 531, 834
HpyAV CCTTC 3 cut(s) 599, 626, 745
HpyCH4III ACNGT 2 cut(s) 586, 698
HpyCH4IV ACGT 2 cut(s) 551, 797
HpyCH4V TGCA 9 cut(s) 119, 170, 221, 338, 365, 389, 421, 560, 575
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpySE526I ACGT 2 cut(s) 551, 797
Hsp92II CATG 5 cut(s) 107, 407, 421, 662, 723
KflI GGGWCCC 1 cut(s) 280
Ksp22I TGATCA 1 cut(s) 201
Kzo9I GATC 2 cut(s) 201, 704
LguI GCTCTTC 1 cut(s) 665
Lsp1109I GCAGC 1 cut(s) 587
LweI GCATC 3 cut(s) 208, 230, 376
MaeI CTAG 2 cut(s) 264, 566
MaeII ACGT 2 cut(s) 551, 797
MaeIII GTNAC 2 cut(s) 368, 790
MalI GATC 2 cut(s) 203, 706
MboI GATC 2 cut(s) 201, 704
MboII GAAGA 4 cut(s) 332, 451, 614, 682
MfeI CAATTG 1 cut(s) 390
MlsI TGGCCA 1 cut(s) 641
MluCI AATT 6 cut(s) 51, 94, 390, 450, 534, 677
MluNI TGGCCA 1 cut(s) 641
MmeI TCCRAC 4 cut(s) 89, 379, 620, 635
MnlI CCTC 7 cut(s) 43, 74, 111, 270, 304, 771, 781
Mox20I TGGCCA 1 cut(s) 641
Mph1103I ATGCAT 1 cut(s) 223
MscI TGGCCA 1 cut(s) 641
MseI TTAA 2 cut(s) 270, 459
Msp20I TGGCCA 1 cut(s) 641
MunI CAATTG 1 cut(s) 390
MwoI GCNNNNNNNGC 1 cut(s) 218
NdeII GATC 2 cut(s) 201, 704
NlaIII CATG 5 cut(s) 107, 407, 421, 662, 723
NlaIV GGNNCC 5 cut(s) 281, 282, 518, 733, 756
NmuCI GTSAC 2 cut(s) 368, 790
NsiI ATGCAT 1 cut(s) 223
NspV TTCGAA 1 cut(s) 92
PciSI GCTCTTC 1 cut(s) 665
PfeI GAWTC 3 cut(s) 39, 328, 395
PflFI GACNNNGTC 1 cut(s) 796
PkrI GCNGC 1 cut(s) 577
PpuMI RGGWCCY 1 cut(s) 280
PshBI ATTAAT 1 cut(s) 270
Psp5II RGGWCCY 1 cut(s) 280
PspN4I GGNNCC 5 cut(s) 281, 282, 518, 733, 756
PspPI GGNCC 3 cut(s) 280, 608, 773
PspPPI RGGWCCY 1 cut(s) 280
PstI CTGCAG 1 cut(s) 121
PstNI CAGNNNCTG 1 cut(s) 42
PsyI GACNNNGTC 1 cut(s) 796
RsaI GTAC 2 cut(s) 470, 657
RsaNI GTAC 2 cut(s) 469, 656
SapI GCTCTTC 1 cut(s) 665
SaqAI TTAA 2 cut(s) 270, 459
SatI GCNGC 1 cut(s) 576
Sau3AI GATC 2 cut(s) 201, 704
Sau96I GGNCC 3 cut(s) 280, 608, 773
SbfI CCTGCAGG 1 cut(s) 121
SdaI CCTGCAGG 1 cut(s) 121
SfaNI GCATC 3 cut(s) 208, 230, 376
SfcI CTRYAG 2 cut(s) 117, 694
SfuI TTCGAA 1 cut(s) 92
SinI GGWCC 3 cut(s) 280, 608, 773
SmlI CTYRAG 1 cut(s) 842
SmoI CTYRAG 1 cut(s) 842
Sse8387I CCTGCAGG 1 cut(s) 121
Sse9I AATT 6 cut(s) 51, 94, 390, 450, 534, 677
SspMI CTAG 2 cut(s) 264, 566
StyI CCWWGG 2 cut(s) 263, 776
TaaI ACNGT 2 cut(s) 586, 698
TaiI ACGT 2 cut(s) 554, 800
TaqI TCGA 2 cut(s) 92, 786
TasI AATT 6 cut(s) 51, 94, 390, 450, 534, 677
TatI WGTACW 2 cut(s) 468, 655
TfiI GAWTC 3 cut(s) 39, 328, 395
Tru1I TTAA 2 cut(s) 270, 459
Tru9I TTAA 2 cut(s) 270, 459
TscAI CASTG 2 cut(s) 589, 703
TseFI GTSAC 2 cut(s) 368, 790
TseI GCWGC 1 cut(s) 575
Tsp45I GTSAC 2 cut(s) 368, 790
TspDTI ATGAA 2 cut(s) 258, 529
TspGWI ACGGA 2 cut(s) 202, 516
TspRI CASTG 2 cut(s) 589, 703
Tth111I GACNNNGTC 1 cut(s) 796
VpaK11BI GGWCC 3 cut(s) 280, 608, 773
VspI ATTAAT 1 cut(s) 270
XapI RAATTY 2 cut(s) 51, 94
XmaJI CCTAGG 1 cut(s) 263
XspI CTAG 2 cut(s) 264, 566
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.