Rh2AG132800

Protein CHAPERONE-LIKE PROTEIN OF POR1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0010931
Physical Location & Seq
Reverse (-)
11997908 .. 12000720
2813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG132800.1

Sequence Viewer

Length: 642 bp
ATGGATGCTTCCTTTGGTGATATGTCAAATGAACCAACTGCTATCTTTCCTAGGATTAATGTGAGGGACCCATACAAACGGCTTGGGATAAGCAGGGAGGCTTCTGAAGAAGAAATTCAAGGTGCAAGGAACTTCCTTATCCGACAGTATGCTGGTCACAAACCAAGTGAAGATGCAATTGAATCAGCATATGACAAAATAATCATGCAGCAGTTTTATGATAGGAAGAACCCAGATATCGACTTTAAGAAAAAGTTTAGGGCAGTCAGTCAGTCCCGTGTTGTGCAGGCTGTGAGAAGTAGGTTCCGCACTCCAGCCACACAGTTCATTATAAAAACTTCCATTGCATTTATAGTGCTGGGAGCCCTCACTTTTCTGTTCCCAACCGAAGAAGGTCCAACCCTTCAAGTAGCCATTTCTTTGTTGGCCACCATATATTTCATACATGAAAGACTACAGAGCAAATGGCGAGCTTTTCTCTACAGTGCTGGAGCATTTGTTTTCTCATGGCTGGTGGGAACTTTCTTGATGGTGGCTGTGATTCCACCCATACCTTTCATTAAAGGACTAAGGAGTTTTGAGGTGATAACTTCACTCATAACTTATGTGCTACTCTGGGTCGCGTCTACTTATCTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CPP1-like

Protein Analysis

213

Amino Acids

24.35

Weight (kDa)

9.66

Isoelectric Point (pI)

48.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CPP1-like PF11833 33 - 212 1.6e-53 Protein CHAPERONE-LIKE PROTEIN OF POR1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 332
AccI GTMKAC 1 cut(s) 626
AccII CGCG 1 cut(s) 623
AciI CCGC 1 cut(s) 307
AcoI YGGCCR 1 cut(s) 426
AcsI RAATTY 1 cut(s) 114
AcuI CTGAAG 1 cut(s) 126
AgsI TTSAA 3 cut(s) 119, 182, 407
AluBI AGCT 1 cut(s) 473
AluI AGCT 1 cut(s) 473
AoxI GGCC 1 cut(s) 426
ApeKI GCWGC 1 cut(s) 208
ApoI RAATTY 1 cut(s) 114
AseI ATTAAT 1 cut(s) 57
Asp700I GAANNNNTTC 1 cut(s) 114
AspA2I CCTAGG 1 cut(s) 50
AspS9I GGNCC 2 cut(s) 67, 395
AsuHPI GGTGA 2 cut(s) 29, 595
AvaII GGWCC 2 cut(s) 67, 395
AvrII CCTAGG 1 cut(s) 50
BalI TGGCCA 1 cut(s) 428
BanII GRGCYC 1 cut(s) 367
BbvI GCAGC 1 cut(s) 220
BccI CCATC 1 cut(s) 523
BceAI ACGGC 1 cut(s) 95
BfaI CTAG 1 cut(s) 51
BfmI CTRYAG 2 cut(s) 455, 481
BisI GCNGC 1 cut(s) 209
BlnI CCTAGG 1 cut(s) 50
BlsI GCNGC 1 cut(s) 210
Bme18I GGWCC 2 cut(s) 67, 395
BmgT120I GGNCC 2 cut(s) 67, 395
BmiI GGNNCC 4 cut(s) 68, 69, 305, 364
BmsI GCATC 1 cut(s) 163
BplI GAGNNNNNCTC 2 cut(s) 462, 494
BpmI CTGGAG 2 cut(s) 297, 510
BsaJI CCNNGG 1 cut(s) 50
BsaXI ACNNNNNCTCC 2 cut(s) 483, 513
Bse3DI GCAATG 1 cut(s) 342
BseDI CCNNGG 1 cut(s) 50
BseGI GGATG 1 cut(s) 10
BseMI GCAATG 1 cut(s) 342
BseXI GCAGC 1 cut(s) 220
BseYI CCCAGC 1 cut(s) 358
BsgI GTGCAG 1 cut(s) 305
Bsh1236I CGCG 1 cut(s) 623
BshFI GGCC 1 cut(s) 428
BslFI GGGAC 2 cut(s) 80, 259
BsmFI GGGAC 2 cut(s) 80, 259
BsnI GGCC 1 cut(s) 428
Bsp1286I GDGCHC 1 cut(s) 367
BspACI CCGC 1 cut(s) 307
BspANI GGCC 1 cut(s) 428
BspFNI CGCG 1 cut(s) 623
BspLI GGNNCC 4 cut(s) 68, 69, 305, 364
BsrDI GCAATG 1 cut(s) 342
BssECI CCNNGG 1 cut(s) 50
BssT1I CCWWGG 1 cut(s) 50
Bst4CI ACNGT 3 cut(s) 147, 324, 485
BstC8I GCNNGC 2 cut(s) 288, 471
BstDEI CTNAG 1 cut(s) 569
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 1 cut(s) 623
BstSFI CTRYAG 2 cut(s) 455, 481
BstUI CGCG 1 cut(s) 623
BstV1I GCAGC 1 cut(s) 220
BsuRI GGCC 1 cut(s) 428
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 490
Cac8I GCNNGC 2 cut(s) 288, 471
Cfr13I GGNCC 2 cut(s) 67, 395
CseI GACGC 1 cut(s) 612
CviAII CATG 3 cut(s) 205, 446, 507
DdeI CTNAG 1 cut(s) 569
EaeI YGGCCR 1 cut(s) 426
Eco130I CCWWGG 1 cut(s) 50
Eco24I GRGCYC 1 cut(s) 367
Eco32I GATATC 1 cut(s) 238
Eco47I GGWCC 2 cut(s) 67, 395
Eco57I CTGAAG 1 cut(s) 126
EcoO109I RGGNCCY 1 cut(s) 67
EcoRV GATATC 1 cut(s) 238
EcoT14I CCWWGG 1 cut(s) 50
EcoT38I GRGCYC 1 cut(s) 367
ErhI CCWWGG 1 cut(s) 50
FaeI CATG 3 cut(s) 208, 449, 510
FaqI GGGAC 2 cut(s) 80, 259
FatI CATG 3 cut(s) 204, 445, 506
FauNDI CATATG 1 cut(s) 190
FblI GTMKAC 1 cut(s) 626
Fnu4HI GCNGC 1 cut(s) 209
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 367
Fsp4HI GCNGC 1 cut(s) 209
FspBI CTAG 1 cut(s) 51
GluI GCNGC 1 cut(s) 209
GsaI CCCAGC 1 cut(s) 362
GsuI CTGGAG 2 cut(s) 297, 510
HaeIII GGCC 1 cut(s) 428
HgaI GACGC 1 cut(s) 612
Hin1II CATG 3 cut(s) 208, 449, 510
HinfI GANTC 2 cut(s) 182, 541
HphI GGTGA 2 cut(s) 29, 595
Hpy166II GTNNAC 1 cut(s) 627
Hpy188I TCNGA 3 cut(s) 106, 143, 636
Hpy188III TCNNGA 1 cut(s) 526
Hpy8I GTNNAC 1 cut(s) 627
HpyAV CCTTC 2 cut(s) 386, 413
HpyCH4III ACNGT 3 cut(s) 147, 324, 485
HpyCH4V TGCA 5 cut(s) 125, 176, 208, 286, 347
HpyF3I CTNAG 1 cut(s) 569
Hsp92II CATG 3 cut(s) 208, 449, 510
KflI GGGWCCC 1 cut(s) 67
LmnI GCTCC 2 cut(s) 362, 491
LpnPI CCDG 9 cut(s) 79, 138, 246, 272, 327, 344, 474, 497, 601
Lsp1109I GCAGC 1 cut(s) 220
LweI GCATC 1 cut(s) 163
MaeI CTAG 1 cut(s) 51
MaeIII GTNAC 1 cut(s) 155
MboII GAAGA 5 cut(s) 119, 122, 182, 238, 401
MfeI CAATTG 1 cut(s) 177
MhlI GDGCHC 1 cut(s) 367
MlsI TGGCCA 1 cut(s) 428
MluCI AATT 2 cut(s) 114, 177
MluNI TGGCCA 1 cut(s) 428
MmeI TCCRAC 2 cut(s) 166, 422
MnlI CCTC 4 cut(s) 57, 91, 377, 574
Mox20I TGGCCA 1 cut(s) 428
MroXI GAANNNNTTC 1 cut(s) 114
MscI TGGCCA 1 cut(s) 428
MseI TTAA 3 cut(s) 57, 246, 561
Msp20I TGGCCA 1 cut(s) 428
MunI CAATTG 1 cut(s) 177
MvnI CGCG 1 cut(s) 623
NdeI CATATG 1 cut(s) 190
NlaIII CATG 3 cut(s) 208, 449, 510
NlaIV GGNNCC 4 cut(s) 68, 69, 305, 364
NmuCI GTSAC 1 cut(s) 155
PdmI GAANNNNTTC 1 cut(s) 114
PfeI GAWTC 2 cut(s) 182, 541
PkrI GCNGC 1 cut(s) 210
PpuMI RGGWCCY 1 cut(s) 67
PshBI ATTAAT 1 cut(s) 57
PsiI TTATAA 1 cut(s) 332
Psp5II RGGWCCY 1 cut(s) 67
PspFI CCCAGC 1 cut(s) 358
PspN4I GGNNCC 4 cut(s) 68, 69, 305, 364
PspPI GGNCC 2 cut(s) 67, 395
PspPPI RGGWCCY 1 cut(s) 67
SaqAI TTAA 3 cut(s) 57, 246, 561
SatI GCNGC 1 cut(s) 209
Sau96I GGNCC 2 cut(s) 67, 395
SduI GDGCHC 1 cut(s) 367
SetI ASST 6 cut(s) 124, 305, 397, 475, 556, 585
SfaNI GCATC 1 cut(s) 163
SfcI CTRYAG 2 cut(s) 455, 481
SinI GGWCC 2 cut(s) 67, 395
Sse9I AATT 2 cut(s) 114, 177
SsiI CCGC 1 cut(s) 307
SspMI CTAG 1 cut(s) 51
StyI CCWWGG 1 cut(s) 50
TaaI ACNGT 3 cut(s) 147, 324, 485
TaqI TCGA 1 cut(s) 240
TasI AATT 2 cut(s) 114, 177
TfiI GAWTC 2 cut(s) 182, 541
Tru1I TTAA 3 cut(s) 57, 246, 561
Tru9I TTAA 3 cut(s) 57, 246, 561
TscAI CASTG 1 cut(s) 490
TseFI GTSAC 1 cut(s) 155
TseI GCWGC 1 cut(s) 208
Tsp45I GTSAC 1 cut(s) 155
TspDTI ATGAA 5 cut(s) 45, 316, 430, 462, 547
TspRI CASTG 1 cut(s) 490
VpaK11BI GGWCC 2 cut(s) 67, 395
VspI ATTAAT 1 cut(s) 57
XapI RAATTY 1 cut(s) 114
XcmI CCANNNNNNNNNTGG 1 cut(s) 421
XmaJI CCTAGG 1 cut(s) 50
XmiI GTMKAC 1 cut(s) 626
XmnI GAANNNNTTC 1 cut(s) 114
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.