RchiOBHm_Chr2g0099891

Protein CHAPERONE-LIKE PROTEIN OF POR1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0010931
Physical Location & Seq
Reverse (-)
11925327 .. 11927882
2556 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47459

Sequence Viewer

Length: 855 bp
ATGAGTTCTGTAGCTGGGCTGACTGGTAGTCCATCCAGATGCTGCTTTCCTGTACCTGTGGGAAGTTCCACTTCTCGGTGCAGGAGAGTTTCCAACCTCCCTCGTGCTTGGAAGCCTGCAGAAAACAGTGTGCTGCTTCGTGCCGAAAGAAGTTATTGGGCTGGCGTTACACAAAGATCGAATGCAAGGAAAACTCATGTGATCAAGTGCTCCATGGATGCTTCCTTTGGTGATATGTCAAATGAACCAACTGCTATCTTTCCTAGGATTAATGTGAGGGACCCATACAAACGGCTTGGGATAAGCAGGGAGGCTTCTGAAGAAGAAATTCAAGGTGCAAGGAACTTCCTTATCCGACAGTATGCTGGTCACAAACCAAGTGAAGATGCAATTGAATCAGCATATGACAAAATAATCATGCAGCAGTTTTATGATAGGAAGAACCCAAATATCGACTTTAAGAAAAAGTTTAGGGCAGTCAGTCAGTCCCGTGTTGTGCAGGCTGTGAGAAGTAGGTTCCGCACTCCAGCCACACAGTTCATTATAAAAACTTCCATTGCATTTATAGTGCTGGGAGCCCTCACTTTTCTGTTCCCAACCGAAGAAGGTCCAACCCTTCAAGTAGCCATTTCTTTGTTGGCCACCATATATTTCATACATGAAAGACTACAGAGCAAATGGCGAGCTTTTCTCTACAGTGCTGGAGCATTTGTTTTCTCATGGCTGGTGGGAACTTTCTTGATGGTGGCTGTGATTCCACCCATACCTTTCATTAAAGGACTAAGGAGTTTTGAGGTGATAACTTCACTCATAACTTATGTGCTACTCTGGGTCGCGTCTACTTATCTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CPP1-like

Protein Analysis

284

Amino Acids

32.08

Weight (kDa)

10.11

Isoelectric Point (pI)

53.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CPP1-like PF11833 104 - 283 2.7e-53 Protein CHAPERONE-LIKE PROTEIN OF POR1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 545
AccI GTMKAC 1 cut(s) 839
AccII CGCG 1 cut(s) 836
AciI CCGC 1 cut(s) 520
AcoI YGGCCR 1 cut(s) 639
AcsI RAATTY 1 cut(s) 327
AcuI CTGAAG 1 cut(s) 339
AfaI GTAC 1 cut(s) 54
AfiI CCNNNNNNNGG 1 cut(s) 75
AgsI TTSAA 3 cut(s) 332, 395, 620
AhdI GACNNNNNGTC 1 cut(s) 27
AluBI AGCT 2 cut(s) 14, 686
AluI AGCT 2 cut(s) 14, 686
Alw21I GWGCWC 1 cut(s) 212
AlwNI CAGNNNCTG 1 cut(s) 42
AoxI GGCC 1 cut(s) 639
ApeKI GCWGC 3 cut(s) 42, 133, 421
ApoI RAATTY 1 cut(s) 327
AseI ATTAAT 1 cut(s) 270
Asp700I GAANNNNTTC 1 cut(s) 327
AspA2I CCTAGG 1 cut(s) 263
AspS9I GGNCC 2 cut(s) 280, 608
AsuHPI GGTGA 2 cut(s) 242, 808
AvaII GGWCC 2 cut(s) 280, 608
AvrII CCTAGG 1 cut(s) 263
BalI TGGCCA 1 cut(s) 641
BanII GRGCYC 1 cut(s) 580
BauI CACGAG 1 cut(s) 102
Bbv12I GWGCWC 1 cut(s) 212
BbvI GCAGC 3 cut(s) 29, 120, 433
BccI CCATC 2 cut(s) 40, 736
BceAI ACGGC 1 cut(s) 308
BclI TGATCA 1 cut(s) 201
BfaI CTAG 1 cut(s) 264
BfmI CTRYAG 4 cut(s) 9, 117, 668, 694
BisI GCNGC 3 cut(s) 43, 134, 422
BlnI CCTAGG 1 cut(s) 263
BlsI GCNGC 3 cut(s) 44, 135, 423
Bme18I GGWCC 2 cut(s) 280, 608
BmeRI GACNNNNNGTC 1 cut(s) 27
BmgT120I GGNCC 2 cut(s) 280, 608
BmiI GGNNCC 4 cut(s) 281, 282, 518, 577
BmsI GCATC 3 cut(s) 29, 208, 376
BplI GAGNNNNNCTC 2 cut(s) 675, 707
BpmI CTGGAG 2 cut(s) 510, 723
BsaJI CCNNGG 2 cut(s) 213, 263
BsaXI ACNNNNNCTCC 2 cut(s) 696, 726
Bsc4I CCNNNNNNNGG 1 cut(s) 75
Bse1I ACTGG 1 cut(s) 28
Bse3DI GCAATG 1 cut(s) 555
BseDI CCNNGG 2 cut(s) 213, 263
BseGI GGATG 2 cut(s) 32, 223
BseLI CCNNNNNNNGG 1 cut(s) 75
BseMI GCAATG 1 cut(s) 555
BseNI ACTGG 1 cut(s) 28
BseXI GCAGC 3 cut(s) 29, 120, 433
BseYI CCCAGC 2 cut(s) 14, 571
BsgI GTGCAG 2 cut(s) 100, 518
Bsh1236I CGCG 1 cut(s) 836
BshFI GGCC 1 cut(s) 641
BsiHKAI GWGCWC 1 cut(s) 212
BslFI GGGAC 2 cut(s) 293, 472
BslI CCNNNNNNNGG 1 cut(s) 75
BsmFI GGGAC 2 cut(s) 293, 472
BsmI GAATGC 1 cut(s) 187
BsnI GGCC 1 cut(s) 641
Bsp1286I GDGCHC 2 cut(s) 212, 580
Bsp143I GATC 2 cut(s) 176, 201
Bsp19I CCATGG 1 cut(s) 213
BspACI CCGC 1 cut(s) 520
BspANI GGCC 1 cut(s) 641
BspFNI CGCG 1 cut(s) 836
BspLI GGNNCC 4 cut(s) 281, 282, 518, 577
BspMAI CTGCAG 1 cut(s) 121
BsrDI GCAATG 1 cut(s) 555
BsrI ACTGG 1 cut(s) 28
BssECI CCNNGG 2 cut(s) 213, 263
BssMI GATC 2 cut(s) 176, 201
BssSI CACGAG 1 cut(s) 102
BssT1I CCWWGG 2 cut(s) 213, 263
Bst2BI CACGAG 1 cut(s) 102
Bst4CI ACNGT 4 cut(s) 128, 360, 537, 698
BstC8I GCNNGC 4 cut(s) 117, 163, 501, 684
BstDEI CTNAG 1 cut(s) 782
BstDSI CCRYGG 1 cut(s) 213
BstF5I GGATG 2 cut(s) 32, 223
BstFNI CGCG 1 cut(s) 836
BstKTI GATC 2 cut(s) 179, 204
BstMBI GATC 2 cut(s) 176, 201
BstSFI CTRYAG 4 cut(s) 9, 117, 668, 694
BstUI CGCG 1 cut(s) 836
BstV1I GCAGC 3 cut(s) 29, 120, 433
BsuRI GGCC 1 cut(s) 641
BtgI CCRYGG 1 cut(s) 213
BtsCI GGATG 2 cut(s) 32, 223
BtsIMutI CAGTG 2 cut(s) 133, 703
Cac8I GCNNGC 4 cut(s) 117, 163, 501, 684
CaiI CAGNNNCTG 1 cut(s) 42
Cfr13I GGNCC 2 cut(s) 280, 608
CseI GACGC 1 cut(s) 825
Csp6I GTAC 1 cut(s) 53
CviAII CATG 5 cut(s) 197, 214, 418, 659, 720
CviQI GTAC 1 cut(s) 53
DdeI CTNAG 1 cut(s) 782
DpnI GATC 2 cut(s) 178, 203
DpnII GATC 2 cut(s) 176, 201
DriI GACNNNNNGTC 1 cut(s) 27
EaeI YGGCCR 1 cut(s) 639
Eam1105I GACNNNNNGTC 1 cut(s) 27
Eco130I CCWWGG 2 cut(s) 213, 263
Eco24I GRGCYC 1 cut(s) 580
Eco47I GGWCC 2 cut(s) 280, 608
Eco57I CTGAAG 1 cut(s) 339
EcoO109I RGGNCCY 1 cut(s) 280
EcoT14I CCWWGG 2 cut(s) 213, 263
EcoT38I GRGCYC 1 cut(s) 580
ErhI CCWWGG 2 cut(s) 213, 263
FaeI CATG 5 cut(s) 200, 217, 421, 662, 723
FalI AAGNNNNNCTT 2 cut(s) 55, 87
FaqI GGGAC 2 cut(s) 293, 472
FatI CATG 5 cut(s) 196, 213, 417, 658, 719
FauNDI CATATG 1 cut(s) 403
FbaI TGATCA 1 cut(s) 201
FblI GTMKAC 1 cut(s) 839
Fnu4HI GCNGC 3 cut(s) 43, 134, 422
FokI GGATG 2 cut(s) 19, 230
FriOI GRGCYC 1 cut(s) 580
Fsp4HI GCNGC 3 cut(s) 43, 134, 422
FspBI CTAG 1 cut(s) 264
GluI GCNGC 3 cut(s) 43, 134, 422
GsaI CCCAGC 2 cut(s) 18, 575
GsuI CTGGAG 2 cut(s) 510, 723
HaeIII GGCC 1 cut(s) 641
HgaI GACGC 1 cut(s) 825
Hin1II CATG 5 cut(s) 200, 217, 421, 662, 723
HinfI GANTC 2 cut(s) 395, 754
HphI GGTGA 2 cut(s) 242, 808
Hpy166II GTNNAC 1 cut(s) 840
Hpy188I TCNGA 3 cut(s) 319, 356, 849
Hpy188III TCNNGA 2 cut(s) 36, 739
Hpy8I GTNNAC 1 cut(s) 840
HpyAV CCTTC 2 cut(s) 599, 626
HpyCH4III ACNGT 4 cut(s) 128, 360, 537, 698
HpyCH4V TGCA 8 cut(s) 81, 119, 185, 338, 389, 421, 499, 560
HpyF3I CTNAG 1 cut(s) 782
Hsp92II CATG 5 cut(s) 200, 217, 421, 662, 723
KflI GGGWCCC 1 cut(s) 280
Ksp22I TGATCA 1 cut(s) 201
Kzo9I GATC 2 cut(s) 176, 201
LmnI GCTCC 3 cut(s) 215, 575, 704
Lsp1109I GCAGC 3 cut(s) 29, 120, 433
LweI GCATC 3 cut(s) 29, 208, 376
MaeI CTAG 1 cut(s) 264
MaeIII GTNAC 2 cut(s) 166, 368
MalI GATC 2 cut(s) 178, 203
MboI GATC 2 cut(s) 176, 201
MboII GAAGA 5 cut(s) 332, 335, 395, 451, 614
MfeI CAATTG 1 cut(s) 390
MhlI GDGCHC 2 cut(s) 212, 580
MlsI TGGCCA 1 cut(s) 641
MluCI AATT 2 cut(s) 327, 390
MluNI TGGCCA 1 cut(s) 641
MmeI TCCRAC 3 cut(s) 117, 379, 635
MnlI CCTC 6 cut(s) 107, 111, 270, 304, 590, 787
Mox20I TGGCCA 1 cut(s) 641
MroXI GAANNNNTTC 1 cut(s) 327
MscI TGGCCA 1 cut(s) 641
MseI TTAA 3 cut(s) 270, 459, 774
MslI CAYNNNNRTG 1 cut(s) 37
Msp20I TGGCCA 1 cut(s) 641
MunI CAATTG 1 cut(s) 390
Mva1269I GAATGC 1 cut(s) 187
MvnI CGCG 1 cut(s) 836
NcoI CCATGG 1 cut(s) 213
NdeI CATATG 1 cut(s) 403
NdeII GATC 2 cut(s) 176, 201
NlaIII CATG 5 cut(s) 200, 217, 421, 662, 723
NlaIV GGNNCC 4 cut(s) 281, 282, 518, 577
NmuCI GTSAC 1 cut(s) 368
PctI GAATGC 1 cut(s) 187
PdmI GAANNNNTTC 1 cut(s) 327
PfeI GAWTC 2 cut(s) 395, 754
PkrI GCNGC 3 cut(s) 44, 135, 423
PpuMI RGGWCCY 1 cut(s) 280
PshBI ATTAAT 1 cut(s) 270
PsiI TTATAA 1 cut(s) 545
Psp5II RGGWCCY 1 cut(s) 280
PspFI CCCAGC 2 cut(s) 14, 571
PspN4I GGNNCC 4 cut(s) 281, 282, 518, 577
PspPI GGNCC 2 cut(s) 280, 608
PspPPI RGGWCCY 1 cut(s) 280
PstI CTGCAG 1 cut(s) 121
PstNI CAGNNNCTG 1 cut(s) 42
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
RseI CAYNNNNRTG 1 cut(s) 37
SaqAI TTAA 3 cut(s) 270, 459, 774
SatI GCNGC 3 cut(s) 43, 134, 422
Sau3AI GATC 2 cut(s) 176, 201
Sau96I GGNCC 2 cut(s) 280, 608
SduI GDGCHC 2 cut(s) 212, 580
SetI ASST 9 cut(s) 16, 58, 99, 337, 518, 610, 688, 769, 798
SfaNI GCATC 3 cut(s) 29, 208, 376
SfcI CTRYAG 4 cut(s) 9, 117, 668, 694
SinI GGWCC 2 cut(s) 280, 608
SmiMI CAYNNNNRTG 1 cut(s) 37
Sse9I AATT 2 cut(s) 327, 390
SsiI CCGC 1 cut(s) 520
SspMI CTAG 1 cut(s) 264
StyI CCWWGG 2 cut(s) 213, 263
TaaI ACNGT 4 cut(s) 128, 360, 537, 698
TaqI TCGA 2 cut(s) 179, 453
TasI AATT 2 cut(s) 327, 390
TfiI GAWTC 2 cut(s) 395, 754
Tru1I TTAA 3 cut(s) 270, 459, 774
Tru9I TTAA 3 cut(s) 270, 459, 774
TscAI CASTG 2 cut(s) 133, 703
TseFI GTSAC 1 cut(s) 368
TseI GCWGC 3 cut(s) 42, 133, 421
Tsp45I GTSAC 1 cut(s) 368
TspDTI ATGAA 5 cut(s) 258, 529, 643, 675, 760
TspRI CASTG 2 cut(s) 133, 703
VpaK11BI GGWCC 2 cut(s) 280, 608
VspI ATTAAT 1 cut(s) 270
XapI RAATTY 1 cut(s) 327
XcmI CCANNNNNNNNNTGG 1 cut(s) 634
XmaJI CCTAGG 1 cut(s) 263
XmiI GTMKAC 1 cut(s) 839
XmnI GAANNNNTTC 1 cut(s) 327
XspI CTAG 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.