pycom02g10680

Protein CHAPERONE-LIKE PROTEIN OF POR1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0010931
Physical Location & Seq
Reverse (-)
7414410 .. 7415732
1323 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g10680.1

Sequence Viewer

Length: 636 bp
ATGGATGCATCCTTCGACGATATGTCCAATGAACCAGCTGCTATATTTCCTAGGATTAATGTGAGGGACCCCTACAAGCGACTTGGAATAAGCAGGGAGGCTTCGGAAGATGAGATTCAAGGTGCAAGGAACTTCCTTATCCGACAGTATGCAGGTCACAAACCAAGTGTAGATGCAATTGAATCAGCCCATGACAAAATAATCATGCAGAAGTTCTATGACAGGAAGAACCCAAAAATTGACTTTAAGAAAAAGTACAGGGAAGTCAATCAGTCCCGTGTTGTTCAGGCTGTGAGAAATAGGTTCCGAACTCCGTCCACAAATTTCATTATAAAAACGTCCATTGCATTTCTAGTGCTTGCAGCTCTCACTGTTCTATTTCCAACCGAAGAAGGTCCAACCCTTCAGGTTGCCCTTTCCTTGTTGGCTACCATCTACTTTGTACATGACAGGCTGAAGAGCAAATTACGAGCTTTCCTCTACAGTGCTGGATCATTTGCTTTCTCATGGCTCTTGGGAACCTTCTTGATGGTGTCTGTGGTTCCACCTCTGCTGAAAGGACCAAGGAGTTTCGAGGTGACAACGTCATTGATAACCTATGTGCTACTCTGGGTCTCGTCAACCTATCTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CPP1-like

Protein Analysis

212

Amino Acids

24.06

Weight (kDa)

9.83

Isoelectric Point (pI)

34.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CPP1-like PF11833 33 - 210 2.1e-53 Protein CHAPERONE-LIKE PROTEIN OF POR1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 332
Acc36I ACCTGC 1 cut(s) 143
AclWI GGATC 1 cut(s) 499
AcsI RAATTY 1 cut(s) 322
AcuI CTGAAG 2 cut(s) 389, 476
AfaI GTAC 2 cut(s) 257, 444
AgsI TTSAA 2 cut(s) 119, 182
AhdI GACNNNNNGTC 1 cut(s) 22
AluBI AGCT 3 cut(s) 38, 365, 473
AluI AGCT 3 cut(s) 38, 365, 473
Alw26I GTCTC 1 cut(s) 619
AlwI GGATC 1 cut(s) 499
ApeKI GCWGC 2 cut(s) 38, 362
ApoI RAATTY 1 cut(s) 322
AseI ATTAAT 1 cut(s) 57
AspA2I CCTAGG 1 cut(s) 50
AspS9I GGNCC 3 cut(s) 67, 395, 560
AsuHPI GGTGA 1 cut(s) 589
AvaII GGWCC 3 cut(s) 67, 395, 560
AvrII CCTAGG 1 cut(s) 50
BbvI GCAGC 2 cut(s) 25, 374
BccI CCATC 2 cut(s) 440, 523
BcoDI GTCTC 1 cut(s) 619
BfaI CTAG 2 cut(s) 51, 353
BfmI CTRYAG 1 cut(s) 481
BfuAI ACCTGC 1 cut(s) 143
BisI GCNGC 2 cut(s) 39, 363
BlnI CCTAGG 1 cut(s) 50
BlsI GCNGC 2 cut(s) 40, 364
Bme18I GGWCC 3 cut(s) 67, 395, 560
BmeRI GACNNNNNGTC 1 cut(s) 22
BmgT120I GGNCC 3 cut(s) 67, 395, 560
BmiI GGNNCC 5 cut(s) 68, 69, 305, 520, 543
BmsI GCATC 2 cut(s) 17, 163
BplI GAGNNNNNCTC 2 cut(s) 462, 494
BpuEI CTTGAG 1 cut(s) 614
BsaI GGTCTC 1 cut(s) 619
BsaJI CCNNGG 2 cut(s) 50, 563
Bse3DI GCAATG 1 cut(s) 342
BseDI CCNNGG 2 cut(s) 50, 563
BseGI GGATG 2 cut(s) 8, 10
BseMI GCAATG 1 cut(s) 342
BseXI GCAGC 2 cut(s) 25, 374
BslFI GGGAC 2 cut(s) 80, 259
BsmAI GTCTC 1 cut(s) 619
BsmFI GGGAC 2 cut(s) 80, 259
Bso31I GGTCTC 1 cut(s) 619
Bsp1407I TGTACA 1 cut(s) 442
Bsp143I GATC 1 cut(s) 491
BspLI GGNNCC 5 cut(s) 68, 69, 305, 520, 543
BspMI ACCTGC 1 cut(s) 143
BspPI GGATC 1 cut(s) 499
BspQI GCTCTTC 1 cut(s) 452
BspTNI GGTCTC 1 cut(s) 619
BsrDI GCAATG 1 cut(s) 342
BsrGI TGTACA 1 cut(s) 442
BssECI CCNNGG 2 cut(s) 50, 563
BssMI GATC 1 cut(s) 491
BssT1I CCWWGG 2 cut(s) 50, 563
Bst4CI ACNGT 3 cut(s) 147, 373, 485
Bst6I CTCTTC 1 cut(s) 452
BstAUI TGTACA 1 cut(s) 442
BstC8I GCNNGC 1 cut(s) 360
BstF5I GGATG 2 cut(s) 8, 10
BstKTI GATC 1 cut(s) 494
BstMAI GTCTC 1 cut(s) 619
BstMBI GATC 1 cut(s) 491
BstSFI CTRYAG 1 cut(s) 481
BstV1I GCAGC 2 cut(s) 25, 374
BtsCI GGATG 2 cut(s) 8, 10
BtsIMutI CAGTG 2 cut(s) 369, 490
BveI ACCTGC 1 cut(s) 143
Cac8I GCNNGC 1 cut(s) 360
Cfr13I GGNCC 3 cut(s) 67, 395, 560
Csp6I GTAC 2 cut(s) 256, 443
CviAII CATG 4 cut(s) 191, 205, 446, 507
CviJI RGCY 9 cut(s) 38, 101, 188, 290, 365, 428, 454, 473, 511
CviKI_1 RGCY 9 cut(s) 38, 101, 188, 290, 365, 428, 454, 473, 511
CviQI GTAC 2 cut(s) 256, 443
DpnI GATC 1 cut(s) 493
DpnII GATC 1 cut(s) 491
DriI GACNNNNNGTC 1 cut(s) 22
Eam1104I CTCTTC 1 cut(s) 452
Eam1105I GACNNNNNGTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 452
Eco130I CCWWGG 2 cut(s) 50, 563
Eco31I GGTCTC 1 cut(s) 619
Eco47I GGWCC 3 cut(s) 67, 395, 560
Eco57I CTGAAG 2 cut(s) 389, 476
EcoO109I RGGNCCY 1 cut(s) 67
EcoT14I CCWWGG 2 cut(s) 50, 563
EcoT22I ATGCAT 1 cut(s) 10
ErhI CCWWGG 2 cut(s) 50, 563
FaeI CATG 4 cut(s) 194, 208, 449, 510
FaqI GGGAC 2 cut(s) 80, 259
FatI CATG 4 cut(s) 190, 204, 445, 506
Fnu4HI GCNGC 2 cut(s) 39, 363
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 2 cut(s) 39, 363
FspBI CTAG 2 cut(s) 51, 353
GluI GCNGC 2 cut(s) 39, 363
Hin1II CATG 4 cut(s) 194, 208, 449, 510
HincII GTYRAC 1 cut(s) 621
HindII GTYRAC 1 cut(s) 621
HinfI GANTC 2 cut(s) 115, 182
HphI GGTGA 1 cut(s) 589
Hpy166II GTNNAC 2 cut(s) 318, 621
Hpy188I TCNGA 3 cut(s) 106, 143, 308
Hpy188III TCNNGA 1 cut(s) 526
Hpy8I GTNNAC 2 cut(s) 318, 621
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 4 cut(s) 22, 386, 413, 532
HpyCH4III ACNGT 3 cut(s) 147, 373, 485
HpyCH4IV ACGT 2 cut(s) 338, 584
HpyCH4V TGCA 7 cut(s) 8, 125, 152, 176, 208, 347, 362
HpySE526I ACGT 2 cut(s) 338, 584
Hsp92II CATG 4 cut(s) 194, 208, 449, 510
KflI GGGWCCC 1 cut(s) 67
Kzo9I GATC 1 cut(s) 491
LguI GCTCTTC 1 cut(s) 452
Lsp1109I GCAGC 2 cut(s) 25, 374
LweI GCATC 2 cut(s) 17, 163
MaeI CTAG 2 cut(s) 51, 353
MaeII ACGT 2 cut(s) 338, 584
MaeIII GTNAC 2 cut(s) 155, 577
MalI GATC 1 cut(s) 493
MboI GATC 1 cut(s) 491
MboII GAAGA 4 cut(s) 119, 238, 401, 469
MfeI CAATTG 1 cut(s) 177
MluCI AATT 4 cut(s) 177, 237, 322, 464
MmeI TCCRAC 3 cut(s) 166, 407, 422
MnlI CCTC 5 cut(s) 57, 91, 488, 558, 568
Mph1103I ATGCAT 1 cut(s) 10
MseI TTAA 2 cut(s) 57, 246
MspA1I CMGCKG 1 cut(s) 38
MunI CAATTG 1 cut(s) 177
NdeII GATC 1 cut(s) 491
NlaIII CATG 4 cut(s) 194, 208, 449, 510
NlaIV GGNNCC 5 cut(s) 68, 69, 305, 520, 543
NmuCI GTSAC 2 cut(s) 155, 577
NsiI ATGCAT 1 cut(s) 10
PciSI GCTCTTC 1 cut(s) 452
PfeI GAWTC 2 cut(s) 115, 182
PflFI GACNNNGTC 1 cut(s) 583
PkrI GCNGC 2 cut(s) 40, 364
PpuMI RGGWCCY 1 cut(s) 67
PshBI ATTAAT 1 cut(s) 57
PsiI TTATAA 1 cut(s) 332
Psp5II RGGWCCY 1 cut(s) 67
PspN4I GGNNCC 5 cut(s) 68, 69, 305, 520, 543
PspPI GGNCC 3 cut(s) 67, 395, 560
PspPPI RGGWCCY 1 cut(s) 67
PsyI GACNNNGTC 1 cut(s) 583
PvuII CAGCTG 1 cut(s) 38
RsaI GTAC 2 cut(s) 257, 444
RsaNI GTAC 2 cut(s) 256, 443
SapI GCTCTTC 1 cut(s) 452
SaqAI TTAA 2 cut(s) 57, 246
SatI GCNGC 2 cut(s) 39, 363
Sau3AI GATC 1 cut(s) 491
Sau96I GGNCC 3 cut(s) 67, 395, 560
SfaNI GCATC 2 cut(s) 17, 163
SfcI CTRYAG 1 cut(s) 481
SinI GGWCC 3 cut(s) 67, 395, 560
SmlI CTYRAG 1 cut(s) 629
SmoI CTYRAG 1 cut(s) 629
Sse9I AATT 4 cut(s) 177, 237, 322, 464
SspMI CTAG 2 cut(s) 51, 353
StyI CCWWGG 2 cut(s) 50, 563
TaaI ACNGT 3 cut(s) 147, 373, 485
TaiI ACGT 2 cut(s) 341, 587
TaqI TCGA 2 cut(s) 15, 573
TasI AATT 4 cut(s) 177, 237, 322, 464
TatI WGTACW 2 cut(s) 255, 442
TfiI GAWTC 2 cut(s) 115, 182
Tru1I TTAA 2 cut(s) 57, 246
Tru9I TTAA 2 cut(s) 57, 246
TscAI CASTG 2 cut(s) 376, 490
TseFI GTSAC 2 cut(s) 155, 577
TseI GCWGC 2 cut(s) 38, 362
Tsp45I GTSAC 2 cut(s) 155, 577
TspDTI ATGAA 2 cut(s) 45, 316
TspGWI ACGGA 1 cut(s) 303
TspRI CASTG 2 cut(s) 376, 490
Tth111I GACNNNGTC 1 cut(s) 583
VpaK11BI GGWCC 3 cut(s) 67, 395, 560
VspI ATTAAT 1 cut(s) 57
XapI RAATTY 1 cut(s) 322
XmaJI CCTAGG 1 cut(s) 50
XspI CTAG 2 cut(s) 51, 353
Zsp2I ATGCAT 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.