AT3G51820

UbiA prenyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010287
Physical Location & Seq
Reverse (-)
19215930 .. 19219128
3199 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G51820.1

Sequence Viewer

Length: 1164 bp
ATGACTTCGATTCTCAACACTGTCTCCACCATCCACTCTTCCAGAGTTACCTCCGTCGATCGAGTCGGAGTCCTCTCTCTTCGGAATTCGGATTCCGTTGAGTTCACTCGCCGGCGTTCTGGTTTCTCGACGTTGATCTACGAATCACCCGGGCGGAGATTTGTTGTGCGTGCGGCGGAGACTGATACTGATAAAGTTAAATCTCAGACACCTGACAAGGCACCAGCCGGTGGTTCAAGCATTAACCAGCTTCTCGGTATCAAAGGAGCATCTCAAGAAACTAATAAATGGAAGATTCGTCTTCAGCTTACAAAACCAGTCACTTGGCCTCCACTGGTTTGGGGAGTCGTCTGTGGTGCTGCTGCTTCAGGGAACTTTCATTGGACCCCAGAGGATGTTGCTAAGTCGATTCTTTGCATGATGATGTCTGGTCCTTGTCTTACTGGCTATACACAGACAATCAACGACTGGTATGATAGAGATATCGACGCAATTAATGAGCCATATCGTCCAATTCCATCTGGAGCAATATCAGAGCCAGAGGTTATTACACAAGTCTGGGTGCTATTATTGGGAGGTCTTGGTATTGCTGGAATATTAGATGTGTGGGCAGGGCATACCACTCCCACTGTCTTCTATCTTGCTTTGGGAGGATCATTGCTATCTTATATATACTCTGCTCCACCTCTTAAGCTAAAACAAAATGGATGGGTTGGAAATTTTGCACTTGGAGCAAGCTATATTAGTTTGCCATGGTGGGCTGGCCAAGCATTGTTTGGCACTCTTACGCCAGATGTTGTTGTTCTAACACTCTTGTACAGCATAGCTGGGTTAGGAATAGCCATTGTTAACGACTTCAAAAGTGTTGAAGGAGATAGAGCATTAGGACTTCAGTCTCTCCCAGTAGCTTTTGGCACCGAAACTGCAAAATGGATATGCGTTGGTGCTATAGACATTACTCAGCTTTCTGTTGCCGGATATCTATTAGCATCTGGGAAACCTTATTATGCGTTGGCGTTGGTTGCTTTGATCATTCCTCAGATTGTGTTCCAGTTTAAATACTTTCTCAAGGACCCTGTCAAATACGACGTCAAGTACCAGGCAAGCGCGCAGCCATTCTTGGTGCTCGGAATATTTGTAACGGCATTAGCATCGCAACACTGA

Protein Analysis

387

Amino Acids

41.88

Weight (kDa)

8.52

Isoelectric Point (pI)

27.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UbiA PF01040 110 - 358 1.9e-40 UbiA prenyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1092
AccB1I GGYRCC 2 cut(s) 220, 914
AccB7I CCANNNNNTGG 1 cut(s) 230
AccII CGCG 1 cut(s) 1109
AciI CCGC 3 cut(s) 154, 173, 176
AclWI GGATC 1 cut(s) 661
AcoI YGGCCR 1 cut(s) 763
AcsI RAATTY 2 cut(s) 85, 718
AcuI CTGAAG 3 cut(s) 287, 351, 875
AcyI GRCGYC 1 cut(s) 1089
AfaI GTAC 2 cut(s) 818, 1097
AfiI CCNNNNNNNGG 1 cut(s) 230
AflII CTTAAG 1 cut(s) 689
AgsI TTSAA 3 cut(s) 237, 859, 869
AjnI CCWGG 1 cut(s) 1098
AluBI AGCT 7 cut(s) 250, 307, 694, 738, 827, 908, 964
AluI AGCT 7 cut(s) 250, 307, 694, 738, 827, 908, 964
Alw21I GWGCWC 1 cut(s) 1128
Alw26I GTCTC 3 cut(s) 28, 173, 900
AlwI GGATC 1 cut(s) 661
Ama87I CYCGRG 1 cut(s) 149
AoxI GGCC 2 cut(s) 326, 763
ApeKI GCWGC 3 cut(s) 359, 362, 1111
ApoI RAATTY 2 cut(s) 85, 718
ArsI GACNNNNNNTTYG 2 cut(s) 1074, 1106
AseI ATTAAT 1 cut(s) 495
AspLEI GCGC 2 cut(s) 1109, 1111
AspS9I GGNCC 3 cut(s) 384, 431, 1072
AsuC2I CCSGG 2 cut(s) 150, 151
AsuHPI GGTGA 1 cut(s) 138
AvaI CYCGRG 1 cut(s) 149
AvaII GGWCC 3 cut(s) 384, 431, 1072
BalI TGGCCA 1 cut(s) 765
BanI GGYRCC 2 cut(s) 220, 914
BbsI GAAGAC 2 cut(s) 293, 625
Bbv12I GWGCWC 1 cut(s) 1128
BbvI GCAGC 3 cut(s) 346, 349, 1123
BccI CCATC 3 cut(s) 38, 526, 702
BceAI ACGGC 1 cut(s) 1158
BcgI CGANNNNNNTGC 1 cut(s) 1134
BciT130I CCWGG 1 cut(s) 1100
BclI TGATCA 1 cut(s) 1029
BcnI CCSGG 2 cut(s) 150, 151
BcoDI GTCTC 3 cut(s) 28, 173, 900
BfmI CTRYAG 1 cut(s) 948
BfrI CTTAAG 1 cut(s) 689
BisI GCNGC 4 cut(s) 174, 360, 363, 1112
BlsI GCNGC 4 cut(s) 175, 361, 364, 1113
Bme1390I CCNGG 3 cut(s) 150, 151, 1100
Bme18I GGWCC 3 cut(s) 384, 431, 1072
BmeT110I CYCGRG 1 cut(s) 149
BmgT120I GGNCC 3 cut(s) 384, 431, 1072
BmiI GGNNCC 4 cut(s) 222, 386, 916, 1074
BmrFI CCNGG 3 cut(s) 150, 151, 1100
BmrI ACTGGG 1 cut(s) 896
BmsI GCATC 3 cut(s) 278, 998, 1160
BmuI ACTGGG 1 cut(s) 896
BoxI GACNNNNGTC 1 cut(s) 892
BpiI GAAGAC 2 cut(s) 293, 625
BpmI CTGGAG 1 cut(s) 543
BpuEI CTTGAG 2 cut(s) 258, 1052
BpuMI CCSGG 2 cut(s) 150, 151
BsaHI GRCGYC 1 cut(s) 1089
BsaJI CCNNGG 2 cut(s) 149, 752
BsaXI ACNNNNNCTCC 4 cut(s) 8, 38, 313, 343
Bsc4I CCNNNNNNNGG 1 cut(s) 230
Bse118I RCCGGY 2 cut(s) 111, 227
Bse1I ACTGG 6 cut(s) 317, 339, 448, 473, 902, 1051
Bse3DI GCAATG 1 cut(s) 656
BseBI CCWGG 1 cut(s) 1100
BseDI CCNNGG 2 cut(s) 149, 752
BseGI GGATG 3 cut(s) 30, 400, 713
BseLI CCNNNNNNNGG 1 cut(s) 230
BseMI GCAATG 1 cut(s) 656
BseMII CTCAG 3 cut(s) 218, 974, 1052
BseNI ACTGG 6 cut(s) 317, 339, 448, 473, 902, 1051
BsePI GCGCGC 1 cut(s) 1107
BseXI GCAGC 3 cut(s) 346, 349, 1123
BseYI CCCAGC 1 cut(s) 827
Bsh1236I CGCG 1 cut(s) 1109
Bsh1285I CGRYCG 1 cut(s) 61
BshFI GGCC 2 cut(s) 328, 765
BshNI GGYRCC 2 cut(s) 220, 914
BsiEI CGRYCG 1 cut(s) 61
BsiHKAI GWGCWC 1 cut(s) 1128
BsiHKCI CYCGRG 1 cut(s) 149
BsiSI CCGG 4 cut(s) 112, 150, 228, 975
BslI CCNNNNNNNGG 1 cut(s) 230
BsmAI GTCTC 3 cut(s) 28, 173, 900
BsnI GGCC 2 cut(s) 328, 765
BsoBI CYCGRG 1 cut(s) 149
Bsp1286I GDGCHC 1 cut(s) 1128
Bsp1407I TGTACA 1 cut(s) 816
Bsp143I GATC 4 cut(s) 58, 135, 653, 1029
Bsp19I CCATGG 1 cut(s) 752
BspACI CCGC 3 cut(s) 154, 173, 176
BspANI GGCC 2 cut(s) 328, 765
BspCNI CTCAG 3 cut(s) 217, 973, 1051
BspFNI CGCG 1 cut(s) 1109
BspLI GGNNCC 4 cut(s) 222, 386, 916, 1074
BspPI GGATC 1 cut(s) 661
BspT107I GGYRCC 2 cut(s) 220, 914
BspTI CTTAAG 1 cut(s) 689
BsrDI GCAATG 1 cut(s) 656
BsrFI RCCGGY 2 cut(s) 111, 227
BsrGI TGTACA 1 cut(s) 816
BsrI ACTGG 6 cut(s) 317, 339, 448, 473, 902, 1051
BssAI RCCGGY 2 cut(s) 111, 227
BssECI CCNNGG 2 cut(s) 149, 752
BssHII GCGCGC 1 cut(s) 1107
BssMI GATC 4 cut(s) 58, 135, 653, 1029
BssNI GRCGYC 1 cut(s) 1089
BssT1I CCWWGG 1 cut(s) 752
Bst2UI CCWGG 1 cut(s) 1100
Bst4CI ACNGT 2 cut(s) 22, 631
Bst6I CTCTTC 2 cut(s) 43, 84
BstACI GRCGYC 1 cut(s) 1089
BstAFI CTTAAG 1 cut(s) 689
BstAUI TGTACA 1 cut(s) 816
BstC8I GCNNGC 6 cut(s) 113, 171, 736, 763, 1105, 1109
BstDEI CTNAG 4 cut(s) 204, 402, 960, 1038
BstDSI CCRYGG 1 cut(s) 752
BstF5I GGATG 3 cut(s) 30, 400, 713
BstFNI CGCG 1 cut(s) 1109
BstHHI GCGC 2 cut(s) 1109, 1111
BstKTI GATC 4 cut(s) 61, 138, 656, 1032
BstMAI GTCTC 3 cut(s) 28, 173, 900
BstMBI GATC 4 cut(s) 58, 135, 653, 1029
BstMCI CGRYCG 1 cut(s) 61
BstMWI GCNNNNNNNGC 3 cut(s) 731, 767, 1022
BstNI CCWGG 1 cut(s) 1100
BstPAI GACNNNNGTC 1 cut(s) 892
BstSCI CCNGG 3 cut(s) 148, 149, 1098
BstSFI CTRYAG 1 cut(s) 948
BstUI CGCG 1 cut(s) 1109
BstV1I GCAGC 3 cut(s) 346, 349, 1123
BstV2I GAAGAC 2 cut(s) 293, 625
BstXI CCANNNNNNTGG 2 cut(s) 324, 339
BsuRI GGCC 2 cut(s) 328, 765
BtgI CCRYGG 1 cut(s) 752
BtgZI GCGATG 1 cut(s) 1137
BtsCI GGATG 3 cut(s) 30, 400, 713
BtsIMutI CAGTG 4 cut(s) 18, 332, 627, 1159
Cac8I GCNNGC 6 cut(s) 113, 171, 736, 763, 1105, 1109
CfoI GCGC 2 cut(s) 1109, 1111
Cfr10I RCCGGY 2 cut(s) 111, 227
Cfr13I GGNCC 3 cut(s) 384, 431, 1072
Cfr9I CCCGGG 1 cut(s) 149
CseI GACGC 1 cut(s) 497
Csp6I GTAC 2 cut(s) 817, 1096
CviAII CATG 2 cut(s) 418, 753
CviQI GTAC 2 cut(s) 817, 1096
DdeI CTNAG 4 cut(s) 204, 402, 960, 1038
DpnI GATC 4 cut(s) 60, 137, 655, 1031
DpnII GATC 4 cut(s) 58, 135, 653, 1029
DraI TTTAAA 1 cut(s) 1057
EaeI YGGCCR 1 cut(s) 763
Eam1104I CTCTTC 2 cut(s) 43, 84
EarI CTCTTC 2 cut(s) 43, 84
EciI GGCGGA 2 cut(s) 169, 191
Eco130I CCWWGG 1 cut(s) 752
Eco32I GATATC 2 cut(s) 484, 980
Eco47I GGWCC 3 cut(s) 384, 431, 1072
Eco57I CTGAAG 3 cut(s) 287, 351, 875
Eco88I CYCGRG 1 cut(s) 149
EcoO109I RGGNCCY 1 cut(s) 1072
EcoRI GAATTC 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 1098
EcoRV GATATC 2 cut(s) 484, 980
EcoT14I CCWWGG 1 cut(s) 752
ErhI CCWWGG 1 cut(s) 752
FaeI CATG 2 cut(s) 421, 756
FatI CATG 2 cut(s) 417, 752
FbaI TGATCA 1 cut(s) 1029
Fnu4HI GCNGC 4 cut(s) 174, 360, 363, 1112
FokI GGATG 3 cut(s) 17, 407, 720
Fsp4HI GCNGC 4 cut(s) 174, 360, 363, 1112
GlaI GCGC 2 cut(s) 1108, 1110
GluI GCNGC 4 cut(s) 174, 360, 363, 1112
GsaI CCCAGC 1 cut(s) 831
GsuI CTGGAG 1 cut(s) 543
HaeIII GGCC 2 cut(s) 328, 765
HapII CCGG 4 cut(s) 112, 150, 228, 975
HgaI GACGC 1 cut(s) 497
HhaI GCGC 2 cut(s) 1109, 1111
Hin1I GRCGYC 1 cut(s) 1089
Hin1II CATG 2 cut(s) 421, 756
Hin6I GCGC 2 cut(s) 1107, 1109
HinP1I GCGC 2 cut(s) 1107, 1109
HincII GTYRAC 1 cut(s) 850
HindII GTYRAC 1 cut(s) 850
HinfI GANTC 8 cut(s) 10, 63, 69, 92, 143, 295, 345, 409
HpaI GTTAAC 1 cut(s) 850
HpaII CCGG 4 cut(s) 112, 150, 228, 975
HphI GGTGA 1 cut(s) 138
Hpy166II GTNNAC 2 cut(s) 105, 850
Hpy188I TCNGA 7 cut(s) 68, 84, 91, 207, 535, 1041, 1130
Hpy188III TCNNGA 4 cut(s) 42, 127, 275, 522
Hpy8I GTNNAC 2 cut(s) 105, 850
Hpy99I CGWCG 4 cut(s) 59, 133, 491, 1091
HpyAV CCTTC 1 cut(s) 863
HpyCH4III ACNGT 2 cut(s) 22, 631
HpyCH4IV ACGT 2 cut(s) 131, 1089
HpyCH4V TGCA 3 cut(s) 417, 725, 926
HpyF10VI GCNNNNNNNGC 3 cut(s) 731, 767, 1022
HpyF3I CTNAG 4 cut(s) 204, 402, 960, 1038
HpySE526I ACGT 2 cut(s) 131, 1089
Hsp92I GRCGYC 1 cut(s) 1089
Hsp92II CATG 2 cut(s) 421, 756
HspAI GCGC 2 cut(s) 1107, 1109
KroI GCCGGC 1 cut(s) 111
KroNI GCCGGC 1 cut(s) 113
Ksp22I TGATCA 1 cut(s) 1029
KspAI GTTAAC 1 cut(s) 850
Kzo9I GATC 4 cut(s) 58, 135, 653, 1029
LmnI GCTCC 4 cut(s) 266, 524, 685, 731
Lsp1109I GCAGC 3 cut(s) 346, 349, 1123
LweI GCATC 3 cut(s) 278, 998, 1160
MaeII ACGT 2 cut(s) 131, 1089
MaeIII GTNAC 3 cut(s) 46, 319, 1138
MalI GATC 4 cut(s) 60, 137, 655, 1031
MboI GATC 4 cut(s) 58, 135, 653, 1029
MboII GAAGA 5 cut(s) 30, 71, 293, 304, 625
MhlI GDGCHC 1 cut(s) 1128
MlsI TGGCCA 1 cut(s) 765
MluCI AATT 4 cut(s) 85, 492, 513, 718
MluNI TGGCCA 1 cut(s) 765
MlyI GAGTC 3 cut(s) 72, 78, 354
MmeI TCCRAC 2 cut(s) 46, 694
MnlI CCTC 9 cut(s) 61, 83, 339, 385, 535, 569, 644, 696, 1047
Mox20I TGGCCA 1 cut(s) 765
MreI CGCCGGCG 1 cut(s) 111
MroNI GCCGGC 1 cut(s) 111
MscI TGGCCA 1 cut(s) 765
MseI TTAA 6 cut(s) 198, 243, 495, 690, 849, 1056
MslI CAYNNNNRTG 1 cut(s) 422
Msp20I TGGCCA 1 cut(s) 765
MspCI CTTAAG 1 cut(s) 689
MspI CCGG 4 cut(s) 112, 150, 228, 975
MspR9I CCNGG 3 cut(s) 150, 151, 1100
MvaI CCWGG 1 cut(s) 1100
MvnI CGCG 1 cut(s) 1109
MwoI GCNNNNNNNGC 3 cut(s) 731, 767, 1022
NaeI GCCGGC 1 cut(s) 113
NciI CCSGG 2 cut(s) 150, 151
NcoI CCATGG 1 cut(s) 752
NdeII GATC 4 cut(s) 58, 135, 653, 1029
NgoMIV GCCGGC 1 cut(s) 111
NlaIII CATG 2 cut(s) 421, 756
NlaIV GGNNCC 4 cut(s) 222, 386, 916, 1074
NmuCI GTSAC 1 cut(s) 319
PauI GCGCGC 1 cut(s) 1107
PdiI GCCGGC 1 cut(s) 113
PfeI GAWTC 5 cut(s) 10, 92, 143, 295, 409
PflFI GACNNNGTC 1 cut(s) 1076
PflMI CCANNNNNTGG 1 cut(s) 230
PkrI GCNGC 4 cut(s) 175, 361, 364, 1113
Ple19I CGATCG 1 cut(s) 61
PleI GAGTC 3 cut(s) 71, 77, 353
PpsI GAGTC 3 cut(s) 71, 77, 353
PpuMI RGGWCCY 1 cut(s) 1072
PshAI GACNNNNGTC 1 cut(s) 892
PshBI ATTAAT 1 cut(s) 495
Psp5II RGGWCCY 1 cut(s) 1072
Psp6I CCWGG 1 cut(s) 1098
PspFI CCCAGC 1 cut(s) 827
PspGI CCWGG 1 cut(s) 1098
PspN4I GGNNCC 4 cut(s) 222, 386, 916, 1074
PspPI GGNCC 3 cut(s) 384, 431, 1072
PspPPI RGGWCCY 1 cut(s) 1072
PsyI GACNNNGTC 1 cut(s) 1076
PteI GCGCGC 1 cut(s) 1107
PvuI CGATCG 1 cut(s) 61
RsaI GTAC 2 cut(s) 818, 1097
RsaNI GTAC 2 cut(s) 817, 1096
RseI CAYNNNNRTG 1 cut(s) 422
SaqAI TTAA 6 cut(s) 198, 243, 495, 690, 849, 1056
SatI GCNGC 4 cut(s) 174, 360, 363, 1112
Sau3AI GATC 4 cut(s) 58, 135, 653, 1029
Sau96I GGNCC 3 cut(s) 384, 431, 1072
SchI GAGTC 3 cut(s) 72, 78, 354
ScrFI CCNGG 3 cut(s) 150, 151, 1100
SduI GDGCHC 1 cut(s) 1128
SfaNI GCATC 3 cut(s) 278, 998, 1160
SfcI CTRYAG 1 cut(s) 948
SgrAI CRCCGGYG 1 cut(s) 111
SinI GGWCC 3 cut(s) 384, 431, 1072
SmaI CCCGGG 1 cut(s) 151
SmiMI CAYNNNNRTG 1 cut(s) 422
SmlI CTYRAG 3 cut(s) 273, 689, 1067
SmoI CTYRAG 3 cut(s) 273, 689, 1067
Sse9I AATT 4 cut(s) 85, 492, 513, 718
SsiI CCGC 3 cut(s) 154, 173, 176
SspI AATATT 2 cut(s) 597, 1134
StyD4I CCNGG 3 cut(s) 148, 149, 1098
StyI CCWWGG 1 cut(s) 752
TaaI ACNGT 2 cut(s) 22, 631
TaiI ACGT 2 cut(s) 134, 1092
TaqI TCGA 6 cut(s) 8, 57, 61, 128, 407, 486
TasI AATT 4 cut(s) 85, 492, 513, 718
TatI WGTACW 1 cut(s) 816
TauI GCSGC 1 cut(s) 176
TfiI GAWTC 5 cut(s) 10, 92, 143, 295, 409
Tru1I TTAA 6 cut(s) 198, 243, 495, 690, 849, 1056
Tru9I TTAA 6 cut(s) 198, 243, 495, 690, 849, 1056
TscAI CASTG 3 cut(s) 25, 339, 634
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 3 cut(s) 359, 362, 1111
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 1 cut(s) 368
TspGWI ACGGA 2 cut(s) 43, 85
TspMI CCCGGG 1 cut(s) 149
TspRI CASTG 3 cut(s) 25, 339, 634
Tth111I GACNNNGTC 1 cut(s) 1076
Van91I CCANNNNNTGG 1 cut(s) 230
Vha464I CTTAAG 1 cut(s) 689
VpaK11BI GGWCC 3 cut(s) 384, 431, 1072
VspI ATTAAT 1 cut(s) 495
XapI RAATTY 2 cut(s) 85, 718
XcmI CCANNNNNNNNNTGG 1 cut(s) 773
XmaI CCCGGG 1 cut(s) 149
ZraI GACGTC 1 cut(s) 1090
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.