Rh3DG121800

Chlorophyll synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0010287
Physical Location & Seq
Reverse (-)
10294787 .. 10299058
4272 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG121800.1

Sequence Viewer

Length: 954 bp
ATGGCGTCCGTACTCAATACGGTGCCTTCCGCTAGATTTTCGAACCCTAACGCCAGCCGAGTTCGTACTCACTCCGTTTTGGCGCCGATTTCCGTTTCGTTTTCCAGGAGGAGATTTACAGTTAGGGCTGCAGAGACTGATACGAATGAAGAAATCAAATCTCAGGCGGCACCGGATAAGGCACCGGCGAGCGGTGGTTCGAGCTTTAATCAGCTTCTTGGAATCAAAGGAGCTTCTCAAGAAACTACACTAAATGATTGGTATGACCGAGAGATTGATGCAATCAATGAGCCATATCGTCCAATTCCCTCGGGGGCAATATCTGAGAATGAGGTTATTACTCAAATCTGGGTACTGCTTTTAGGAGGTCTTGTCTCGGCTGGTATATTGGATGTGTGGGCAGGACATGATTTCCCAATAGTCTTTTACCTTGCTCTGGGTGGATCCTTGCTATCGTACATTTACTCTGCTCCACCTCTAAAGCTTAAACAAAATGGATGGATTGGAAATTTTGCGCTTGGAGCAAGCTATATCTCTTTGCCATGGTGGGCTGGTCAGGCATTATTTGGAACCCTTACACCTGACATAATTGTCCTCACACTCCTGTACAGCATTGCCGGATTGGGGATTGCTATTGTAAATGACTTCAAAAGTGTTGAAGGAGATAGAGCACTGGGACTTCAGTCACTTCCCGTAGCTTTTGGTTCTGAAACTGCAAAATGGATTTGCGTGGGTGCCATCGACATAACTCAGCTATCGATTGCTGGTTATCTGCTAGGGGCTGGTAAACCATACTATGCATTAACTCTAGTTGCTTTGATAGCTCCCCAAGTCTTTTTCCAGTTCAAGTATTTTCTCAAAGACCCTGTCAAGTATGATGTTAAATATCAGGCCAGTGCGCAGCCATTTCTTGTTCTTGGTCTTCTGGTAACAGCTTTAGCAACCAGTCATTGA

Protein Analysis

317

Amino Acids

34.13

Weight (kDa)

6.3

Isoelectric Point (pI)

27.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UbiA PF01040 82 - 288 9.5e-37 UbiA prenyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 590
Acc16I TGCGCA 1 cut(s) 900
AccB1I GGYRCC 5 cut(s) 22, 82, 169, 181, 734
AccBSI CCGCTC 1 cut(s) 192
AciI CCGC 3 cut(s) 30, 167, 192
AclWI GGATC 2 cut(s) 438, 451
AcsI RAATTY 1 cut(s) 508
AcuI CTGAAG 1 cut(s) 665
AcyI GRCGYC 2 cut(s) 5, 83
AfaI GTAC 5 cut(s) 12, 67, 354, 458, 608
AfiI CCNNNNNNNGG 3 cut(s) 191, 436, 624
AgsI TTSAA 3 cut(s) 649, 659, 847
AjnI CCWGG 1 cut(s) 104
AluBI AGCT 9 cut(s) 204, 214, 233, 484, 528, 698, 754, 824, 935
AluI AGCT 9 cut(s) 204, 214, 233, 484, 528, 698, 754, 824, 935
Alw21I GWGCWC 1 cut(s) 673
Alw26I GTCTC 2 cut(s) 128, 379
AlwI GGATC 2 cut(s) 438, 451
AlwNI CAGNNNCTG 1 cut(s) 137
Ama87I CYCGRG 1 cut(s) 310
AoxI GGCC 1 cut(s) 891
ApeKI GCWGC 2 cut(s) 128, 901
ApoI RAATTY 1 cut(s) 508
ArsI GACNNNNNNTTYG 2 cut(s) 852, 884
AspLEI GCGC 3 cut(s) 85, 517, 901
AsuII TTCGAA 1 cut(s) 41
AvaI CYCGRG 1 cut(s) 310
BamHI GGATCC 1 cut(s) 443
BanI GGYRCC 5 cut(s) 22, 82, 169, 181, 734
BbsI GAAGAC 1 cut(s) 914
Bbv12I GWGCWC 1 cut(s) 673
BbvI GCAGC 2 cut(s) 115, 913
BccI CCATC 2 cut(s) 492, 746
BciT130I CCWGG 1 cut(s) 106
BcoDI GTCTC 2 cut(s) 128, 379
BfaI CTAG 3 cut(s) 33, 776, 809
BfmI CTRYAG 1 cut(s) 129
BfoI RGCGCY 1 cut(s) 86
BisI GCNGC 3 cut(s) 129, 168, 902
BlsI GCNGC 3 cut(s) 130, 169, 903
Bme1390I CCNGG 1 cut(s) 106
BmeT110I CYCGRG 1 cut(s) 310
BmiI GGNNCC 7 cut(s) 24, 84, 171, 183, 445, 571, 736
BmrFI CCNGG 1 cut(s) 106
BmrI ACTGGG 1 cut(s) 683
BmsI GCATC 1 cut(s) 268
BmuI ACTGGG 1 cut(s) 683
BoxI GACNNNNGTC 1 cut(s) 682
BpiI GAAGAC 1 cut(s) 914
Bpu14I TTCGAA 1 cut(s) 41
BpuEI CTTGAG 1 cut(s) 222
Bsa29I ATCGAT 1 cut(s) 758
BsaHI GRCGYC 2 cut(s) 5, 83
BsaJI CCNNGG 2 cut(s) 309, 542
BsaWI WCCGGW 1 cut(s) 172
BsaXI ACNNNNNCTCC 2 cut(s) 357, 387
Bsc4I CCNNNNNNNGG 3 cut(s) 191, 436, 624
Bse118I RCCGGY 1 cut(s) 184
Bse1I ACTGG 4 cut(s) 678, 841, 894, 945
Bse3DI GCAATG 1 cut(s) 612
BseBI CCWGG 1 cut(s) 106
BseCI ATCGAT 1 cut(s) 758
BseDI CCNNGG 2 cut(s) 309, 542
BseGI GGATG 2 cut(s) 397, 503
BseLI CCNNNNNNNGG 3 cut(s) 191, 436, 624
BseMI GCAATG 1 cut(s) 612
BseMII CTCAG 3 cut(s) 176, 315, 764
BseNI ACTGG 4 cut(s) 678, 841, 894, 945
BseRI GAGGAG 1 cut(s) 124
BseXI GCAGC 2 cut(s) 115, 913
BshFI GGCC 1 cut(s) 893
BshNI GGYRCC 5 cut(s) 22, 82, 169, 181, 734
BshVI ATCGAT 1 cut(s) 758
BsiHKAI GWGCWC 1 cut(s) 673
BsiHKCI CYCGRG 1 cut(s) 310
BsiSI CCGG 3 cut(s) 173, 185, 618
BslFI GGGAC 1 cut(s) 690
BslI CCNNNNNNNGG 3 cut(s) 191, 436, 624
BsmAI GTCTC 2 cut(s) 128, 379
BsmFI GGGAC 1 cut(s) 690
BsnI GGCC 1 cut(s) 893
BsoBI CYCGRG 1 cut(s) 310
Bsp119I TTCGAA 1 cut(s) 41
Bsp1286I GDGCHC 1 cut(s) 673
Bsp1407I TGTACA 1 cut(s) 606
Bsp143I GATC 1 cut(s) 443
Bsp19I CCATGG 1 cut(s) 542
BspACI CCGC 3 cut(s) 30, 167, 192
BspANI GGCC 1 cut(s) 893
BspCNI CTCAG 3 cut(s) 175, 316, 763
BspDI ATCGAT 1 cut(s) 758
BspLI GGNNCC 7 cut(s) 24, 84, 171, 183, 445, 571, 736
BspMAI CTGCAG 1 cut(s) 133
BspPI GGATC 2 cut(s) 438, 451
BspT104I TTCGAA 1 cut(s) 41
BspT107I GGYRCC 5 cut(s) 22, 82, 169, 181, 734
BsrBI CCGCTC 1 cut(s) 192
BsrDI GCAATG 1 cut(s) 612
BsrFI RCCGGY 1 cut(s) 184
BsrGI TGTACA 1 cut(s) 606
BsrI ACTGG 4 cut(s) 678, 841, 894, 945
BssAI RCCGGY 1 cut(s) 184
BssECI CCNNGG 2 cut(s) 309, 542
BssMI GATC 1 cut(s) 443
BssNI GRCGYC 2 cut(s) 5, 83
BssT1I CCWWGG 1 cut(s) 542
Bst2UI CCWGG 1 cut(s) 106
Bst4CI ACNGT 2 cut(s) 22, 121
BstACI GRCGYC 2 cut(s) 5, 83
BstAUI TGTACA 1 cut(s) 606
BstBI TTCGAA 1 cut(s) 41
BstC8I GCNNGC 3 cut(s) 55, 190, 526
BstDEI CTNAG 3 cut(s) 162, 324, 750
BstDSI CCRYGG 1 cut(s) 542
BstF5I GGATG 2 cut(s) 397, 503
BstH2I RGCGCY 1 cut(s) 86
BstHHI GCGC 3 cut(s) 85, 517, 901
BstKTI GATC 1 cut(s) 446
BstMAI GTCTC 2 cut(s) 128, 379
BstMBI GATC 1 cut(s) 443
BstMWI GCNNNNNNNGC 3 cut(s) 521, 557, 821
BstNI CCWGG 1 cut(s) 106
BstPAI GACNNNNGTC 1 cut(s) 682
BstSCI CCNGG 1 cut(s) 104
BstSFI CTRYAG 1 cut(s) 129
BstV1I GCAGC 2 cut(s) 115, 913
BstV2I GAAGAC 1 cut(s) 914
BstX2I RGATCY 1 cut(s) 443
BstYI RGATCY 1 cut(s) 443
Bsu15I ATCGAT 1 cut(s) 758
BsuRI GGCC 1 cut(s) 893
BsuTUI ATCGAT 1 cut(s) 758
BtgI CCRYGG 1 cut(s) 542
BtsCI GGATG 2 cut(s) 397, 503
BtsIMutI CAGTG 2 cut(s) 671, 901
Cac8I GCNNGC 3 cut(s) 55, 190, 526
CaiI CAGNNNCTG 1 cut(s) 137
CfoI GCGC 3 cut(s) 85, 517, 901
Cfr10I RCCGGY 1 cut(s) 184
ClaI ATCGAT 1 cut(s) 758
Csp6I GTAC 5 cut(s) 11, 66, 353, 457, 607
CviAII CATG 2 cut(s) 407, 543
CviQI GTAC 5 cut(s) 11, 66, 353, 457, 607
DdeI CTNAG 3 cut(s) 162, 324, 750
DinI GGCGCC 1 cut(s) 84
DpnI GATC 1 cut(s) 445
DpnII GATC 1 cut(s) 443
DrdI GACNNNNNNGTC 1 cut(s) 590
DseDI GACNNNNNNGTC 1 cut(s) 590
Eco130I CCWWGG 1 cut(s) 542
Eco57I CTGAAG 1 cut(s) 665
Eco88I CYCGRG 1 cut(s) 310
EcoRII CCWGG 1 cut(s) 104
EcoT14I CCWWGG 1 cut(s) 542
EcoT22I ATGCAT 1 cut(s) 802
EgeI GGCGCC 1 cut(s) 84
EheI GGCGCC 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 542
FaeI CATG 2 cut(s) 410, 546
FaqI GGGAC 1 cut(s) 690
FatI CATG 2 cut(s) 406, 542
Fnu4HI GCNGC 3 cut(s) 129, 168, 902
FokI GGATG 2 cut(s) 404, 510
Fsp4HI GCNGC 3 cut(s) 129, 168, 902
FspBI CTAG 3 cut(s) 33, 776, 809
FspI TGCGCA 1 cut(s) 900
GlaI GCGC 3 cut(s) 84, 516, 900
GluI GCNGC 3 cut(s) 129, 168, 902
HaeII RGCGCY 1 cut(s) 86
HaeIII GGCC 1 cut(s) 893
HapII CCGG 3 cut(s) 173, 185, 618
HhaI GCGC 3 cut(s) 85, 517, 901
Hin1I GRCGYC 2 cut(s) 5, 83
Hin1II CATG 2 cut(s) 410, 546
Hin6I GCGC 3 cut(s) 83, 515, 899
HinP1I GCGC 3 cut(s) 83, 515, 899
HindIII AAGCTT 1 cut(s) 482
HinfI GANTC 1 cut(s) 222
HpaII CCGG 3 cut(s) 173, 185, 618
Hpy166II GTNNAC 1 cut(s) 788
Hpy188I TCNGA 2 cut(s) 325, 709
Hpy188III TCNNGA 1 cut(s) 239
Hpy8I GTNNAC 1 cut(s) 788
HpyAV CCTTC 2 cut(s) 36, 653
HpyCH4III ACNGT 2 cut(s) 22, 121
HpyCH4V TGCA 4 cut(s) 131, 281, 716, 800
HpyF10VI GCNNNNNNNGC 3 cut(s) 521, 557, 821
HpyF3I CTNAG 3 cut(s) 162, 324, 750
Hsp92I GRCGYC 2 cut(s) 5, 83
Hsp92II CATG 2 cut(s) 410, 546
HspAI GCGC 3 cut(s) 83, 515, 899
KasI GGCGCC 1 cut(s) 82
Kzo9I GATC 1 cut(s) 443
LmnI GCTCC 4 cut(s) 230, 475, 521, 829
Lsp1109I GCAGC 2 cut(s) 115, 913
LweI GCATC 1 cut(s) 268
MaeI CTAG 3 cut(s) 33, 776, 809
MaeIII GTNAC 2 cut(s) 684, 928
MalI GATC 1 cut(s) 445
MbiI CCGCTC 1 cut(s) 192
MboI GATC 1 cut(s) 443
MboII GAAGA 2 cut(s) 161, 914
MflI RGATCY 1 cut(s) 443
MhlI GDGCHC 1 cut(s) 673
MluCI AATT 3 cut(s) 303, 508, 588
Mly113I GGCGCC 1 cut(s) 83
MnlI CCTC 6 cut(s) 102, 319, 325, 359, 486, 605
Mph1103I ATGCAT 1 cut(s) 802
MseI TTAA 4 cut(s) 207, 486, 803, 882
MspI CCGG 3 cut(s) 173, 185, 618
MspR9I CCNGG 1 cut(s) 106
MvaI CCWGG 1 cut(s) 106
MwoI GCNNNNNNNGC 3 cut(s) 521, 557, 821
NarI GGCGCC 1 cut(s) 83
NcoI CCATGG 1 cut(s) 542
NdeII GATC 1 cut(s) 443
NlaIII CATG 2 cut(s) 410, 546
NlaIV GGNNCC 7 cut(s) 24, 84, 171, 183, 445, 571, 736
NmeAIII GCCGAG 2 cut(s) 83, 356
NmuCI GTSAC 1 cut(s) 684
NsbI TGCGCA 1 cut(s) 900
NsiI ATGCAT 1 cut(s) 802
NspV TTCGAA 1 cut(s) 41
PfeI GAWTC 1 cut(s) 222
PflFI GACNNNGTC 1 cut(s) 866
PfoI TCCNGGA 1 cut(s) 104
PkrI GCNGC 3 cut(s) 130, 169, 903
PluTI GGCGCC 1 cut(s) 86
PshAI GACNNNNGTC 1 cut(s) 682
Psp6I CCWGG 1 cut(s) 104
PspGI CCWGG 1 cut(s) 104
PspN4I GGNNCC 7 cut(s) 24, 84, 171, 183, 445, 571, 736
PstI CTGCAG 1 cut(s) 133
PstNI CAGNNNCTG 1 cut(s) 137
PsuI RGATCY 1 cut(s) 443
PsyI GACNNNGTC 1 cut(s) 866
RsaI GTAC 5 cut(s) 12, 67, 354, 458, 608
RsaNI GTAC 5 cut(s) 11, 66, 353, 457, 607
SaqAI TTAA 4 cut(s) 207, 486, 803, 882
SatI GCNGC 3 cut(s) 129, 168, 902
Sau3AI GATC 1 cut(s) 443
ScrFI CCNGG 1 cut(s) 106
SduI GDGCHC 1 cut(s) 673
SfaNI GCATC 1 cut(s) 268
SfcI CTRYAG 1 cut(s) 129
SfoI GGCGCC 1 cut(s) 84
SfuI TTCGAA 1 cut(s) 41
SgrAI CRCCGGYG 1 cut(s) 184
SmlI CTYRAG 1 cut(s) 237
SmoI CTYRAG 1 cut(s) 237
Sse9I AATT 3 cut(s) 303, 508, 588
SsiI CCGC 3 cut(s) 30, 167, 192
SspDI GGCGCC 1 cut(s) 82
SspMI CTAG 3 cut(s) 33, 776, 809
StyD4I CCNGG 1 cut(s) 104
StyI CCWWGG 1 cut(s) 542
TaaI ACNGT 2 cut(s) 22, 121
TaqI TCGA 4 cut(s) 41, 200, 741, 758
TaqII GACCGA 1 cut(s) 282
TasI AATT 3 cut(s) 303, 508, 588
TatI WGTACW 1 cut(s) 606
TauI GCSGC 1 cut(s) 170
TfiI GAWTC 1 cut(s) 222
Tru1I TTAA 4 cut(s) 207, 486, 803, 882
Tru9I TTAA 4 cut(s) 207, 486, 803, 882
TscAI CASTG 2 cut(s) 678, 901
TseFI GTSAC 1 cut(s) 684
TseI GCWGC 2 cut(s) 128, 901
Tsp45I GTSAC 1 cut(s) 684
TspDTI ATGAA 1 cut(s) 162
TspGWI ACGGA 2 cut(s) 64, 82
TspRI CASTG 2 cut(s) 678, 901
Tth111I GACNNNGTC 1 cut(s) 866
XapI RAATTY 1 cut(s) 508
XspI CTAG 3 cut(s) 33, 776, 809
Zsp2I ATGCAT 1 cut(s) 802
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.