MD00G1061800.v1.1

Chlorophyll synthase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Forward (+)
11439689 .. 11443397
3709 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1061800.v1.1.491

Sequence Viewer

Length: 1122 bp
ATGGCGTCCGTACTCAATATGGTGTCGTCTATTAGCCTATCGAACCTCAACGCCAACCGAGTTCCGACTCAGTCCGCCTTCGCGCCGGTTTCGGTTTCGTTTACCAGAAGGAGGCTTACGGTTAGGGCTGCGGAGACCGATACCAACGAAGTTGAATCTTCAGTGCCGGATAAGGCACCGGCTAAAGCCGGCTCGAGCGTCAATCAGCTTCTTGGGATTAAAGGAGCTTCTCAAGAAACTAACAAGTGGAAGATTCGTCTTCAGCTGACAAAGCCTGTAACTTGGCCTCCACTGGTATGGGGAGTAGTTTGCGGAGCTGCTGCTTCTGGAAATTTTCATTGGACTTTTGAGGATGTTGCTAAATCAATAATGTGCATGTGTATGTCTGGCCCTTTGCTCACTGGCTATACCCAGACACTAAATGACTGGTATGACCGAGAGATCGATGCAATTAATGAACCTTATCGTCCAATTCCCTCAGGGGCAATATCTGAGAATGAGGTTATTACTCAAATCTGGGTGCTGCTTTTAGGAGGCCTTAGTTTCGCTGGCATATTAGATGTGTGGGCAGGACATAAATTCCCAATATTATTTTACCTTGCTGTGGGTGGATCCTTGCTATCGTACATTTATTCCGCTCCACCTTTAAAGCTGAAACAAAACGGATGGATTGGAAATTTTGCCCTGGGTGCAAGTTATATCAGTTTGCCATGGTGGGCTGGTCAGGCATTATTTGGGACCCTTACGCCCGACATAATCGTCCTCACACTCTTGTACAGCATAGCTGGGTTGGGAATTGCTATTGTAAACGACTTTAAAAGTGTTGAAGGAGATAGAGCACTGGGGCTTCAGTCACTCCCTGTAGCTTTTGGTTCTGAAACTGCCAAATGGATTTGTGTTGGCGCCATTGACATCACTCAGTTATCGGTCGCTGGTTATCTGCTAGCGGCTGGTAAACCATATTATGCATTAGCTCTCCTTGCTTTGATAGCTCCCCAAGTCTTTTTCCAGTTCAAGTACTTTCTCAAAGACCCTGTCAAGTACGATGTTAAATATCAGGCGAGTGCGCAGCCGTTTCTTGTGCTCGGTCTTTTAGTGACAGCGTTGGCGACAAGTCATTAA

Protein Analysis

374

Amino Acids

40.32

Weight (kDa)

8.22

Isoelectric Point (pI)

28.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UbiA PF01040 96 - 344 1.9e-38 UbiA prenyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 758
Acc16I TGCGCA 1 cut(s) 1068
AccB1I GGYRCC 2 cut(s) 175, 902
AccBSI CCGCTC 1 cut(s) 638
AccII CGCG 1 cut(s) 83
AciI CCGC 5 cut(s) 75, 131, 312, 636, 947
AclWI GGATC 2 cut(s) 606, 619
AcsI RAATTY 3 cut(s) 331, 578, 676
AcuI CTGAAG 3 cut(s) 144, 245, 833
AcyI GRCGYC 2 cut(s) 5, 903
AfaI GTAC 5 cut(s) 12, 626, 776, 1019, 1043
AfiI CCNNNNNNNGG 2 cut(s) 111, 604
AgsI TTSAA 3 cut(s) 155, 827, 1015
AjnI CCWGG 1 cut(s) 684
AjuI GAANNNNNNNTTGG 2 cut(s) 322, 354
AluBI AGCT 9 cut(s) 208, 227, 265, 317, 652, 785, 866, 974, 992
AluI AGCT 9 cut(s) 208, 227, 265, 317, 652, 785, 866, 974, 992
Alw21I GWGCWC 2 cut(s) 841, 1086
Alw26I GTCTC 1 cut(s) 128
AlwI GGATC 2 cut(s) 606, 619
Ama87I CYCGRG 1 cut(s) 193
AoxI GGCC 3 cut(s) 284, 388, 535
ApeKI GCWGC 5 cut(s) 128, 317, 320, 523, 1069
ApoI RAATTY 3 cut(s) 331, 578, 676
ArsI GACNNNNNNTTYG 2 cut(s) 1020, 1052
AseI ATTAAT 1 cut(s) 453
AspLEI GCGC 3 cut(s) 85, 905, 1069
AspS9I GGNCC 2 cut(s) 389, 738
AsuNHI GCTAGC 1 cut(s) 943
AvaI CYCGRG 1 cut(s) 193
AvaII GGWCC 1 cut(s) 738
AxyI CCTNAGG 1 cut(s) 478
BamHI GGATCC 1 cut(s) 611
BanI GGYRCC 2 cut(s) 175, 902
BarI GAAGNNNNNNTAC 2 cut(s) 100, 132
BbsI GAAGAC 1 cut(s) 251
Bbv12I GWGCWC 2 cut(s) 841, 1086
BbvI GCAGC 5 cut(s) 115, 304, 307, 510, 1081
BccI CCATC 1 cut(s) 660
BceAI ACGGC 1 cut(s) 1057
BciT130I CCWGG 1 cut(s) 686
BcoDI GTCTC 1 cut(s) 128
BfaI CTAG 1 cut(s) 944
BfmI CTRYAG 1 cut(s) 861
BfoI RGCGCY 1 cut(s) 906
BisI GCNGC 6 cut(s) 129, 318, 321, 524, 948, 1070
BlsI GCNGC 6 cut(s) 130, 319, 322, 525, 949, 1071
BmcAI AGTACT 1 cut(s) 1019
Bme1390I CCNGG 1 cut(s) 686
Bme18I GGWCC 1 cut(s) 738
BmeT110I CYCGRG 1 cut(s) 193
BmgT120I GGNCC 2 cut(s) 389, 738
BmiI GGNNCC 5 cut(s) 177, 613, 739, 740, 904
BmrFI CCNGG 1 cut(s) 686
BmrI ACTGGG 1 cut(s) 851
BmsI GCATC 1 cut(s) 436
BmtI GCTAGC 1 cut(s) 947
BmuI ACTGGG 1 cut(s) 851
BpiI GAAGAC 1 cut(s) 251
BpuEI CTTGAG 1 cut(s) 216
Bsa29I ATCGAT 1 cut(s) 444
BsaHI GRCGYC 2 cut(s) 5, 903
BsaI GGTCTC 1 cut(s) 128
BsaJI CCNNGG 3 cut(s) 684, 685, 710
BsaXI ACNNNNNCTCC 2 cut(s) 271, 301
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 604
Bse118I RCCGGY 3 cut(s) 85, 178, 188
Bse1I ACTGG 5 cut(s) 297, 406, 431, 846, 1009
Bse21I CCTNAGG 1 cut(s) 478
BseBI CCWGG 1 cut(s) 686
BseCI ATCGAT 1 cut(s) 444
BseDI CCNNGG 3 cut(s) 684, 685, 710
BseGI GGATG 2 cut(s) 358, 671
BseLI CCNNNNNNNGG 2 cut(s) 111, 604
BseMII CTCAG 4 cut(s) 83, 483, 492, 932
BseNI ACTGG 5 cut(s) 297, 406, 431, 846, 1009
BseXI GCAGC 5 cut(s) 115, 304, 307, 510, 1081
BseYI CCCAGC 1 cut(s) 785
Bsh1236I CGCG 1 cut(s) 83
Bsh1285I CGRYCG 1 cut(s) 930
BshFI GGCC 3 cut(s) 286, 390, 537
BshNI GGYRCC 2 cut(s) 175, 902
BshVI ATCGAT 1 cut(s) 444
BsiEI CGRYCG 1 cut(s) 930
BsiHKAI GWGCWC 2 cut(s) 841, 1086
BsiHKCI CYCGRG 1 cut(s) 193
BsiSI CCGG 4 cut(s) 86, 167, 179, 189
BslFI GGGAC 1 cut(s) 751
BslI CCNNNNNNNGG 2 cut(s) 111, 604
BsmAI GTCTC 1 cut(s) 128
BsmFI GGGAC 1 cut(s) 751
BsnI GGCC 3 cut(s) 286, 390, 537
Bso31I GGTCTC 1 cut(s) 128
BsoBI CYCGRG 1 cut(s) 193
Bsp1286I GDGCHC 2 cut(s) 841, 1086
Bsp1407I TGTACA 1 cut(s) 774
Bsp143I GATC 2 cut(s) 441, 611
Bsp19I CCATGG 1 cut(s) 710
BspACI CCGC 5 cut(s) 75, 131, 312, 636, 947
BspANI GGCC 3 cut(s) 286, 390, 537
BspCNI CTCAG 4 cut(s) 82, 484, 491, 931
BspDI ATCGAT 1 cut(s) 444
BspFNI CGCG 1 cut(s) 83
BspLI GGNNCC 5 cut(s) 177, 613, 739, 740, 904
BspOI GCTAGC 1 cut(s) 947
BspPI GGATC 2 cut(s) 606, 619
BspT107I GGYRCC 2 cut(s) 175, 902
BspTNI GGTCTC 1 cut(s) 128
BsrBI CCGCTC 1 cut(s) 638
BsrFI RCCGGY 3 cut(s) 85, 178, 188
BsrGI TGTACA 1 cut(s) 774
BsrI ACTGG 5 cut(s) 297, 406, 431, 846, 1009
BssAI RCCGGY 3 cut(s) 85, 178, 188
BssECI CCNNGG 3 cut(s) 684, 685, 710
BssMI GATC 2 cut(s) 441, 611
BssNI GRCGYC 2 cut(s) 5, 903
BssT1I CCWWGG 1 cut(s) 710
Bst2UI CCWGG 1 cut(s) 686
Bst4CI ACNGT 1 cut(s) 121
BstACI GRCGYC 2 cut(s) 5, 903
BstAUI TGTACA 1 cut(s) 774
BstC8I GCNNGC 3 cut(s) 190, 550, 945
BstDEI CTNAG 5 cut(s) 69, 478, 492, 539, 918
BstDSI CCRYGG 1 cut(s) 710
BstF5I GGATG 2 cut(s) 358, 671
BstFNI CGCG 1 cut(s) 83
BstH2I RGCGCY 1 cut(s) 906
BstHHI GCGC 3 cut(s) 85, 905, 1069
BstKTI GATC 2 cut(s) 444, 614
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 2 cut(s) 441, 611
BstMCI CGRYCG 1 cut(s) 930
BstMWI GCNNNNNNNGC 5 cut(s) 271, 689, 725, 980, 989
BstNI CCWGG 1 cut(s) 686
BstNSI RCATGY 1 cut(s) 379
BstSCI CCNGG 1 cut(s) 684
BstSFI CTRYAG 1 cut(s) 861
BstUI CGCG 1 cut(s) 83
BstV1I GCAGC 5 cut(s) 115, 304, 307, 510, 1081
BstV2I GAAGAC 1 cut(s) 251
BstX2I RGATCY 1 cut(s) 611
BstXI CCANNNNNNTGG 1 cut(s) 297
BstYI RGATCY 1 cut(s) 611
Bsu15I ATCGAT 1 cut(s) 444
Bsu36I CCTNAGG 1 cut(s) 478
BsuRI GGCC 3 cut(s) 286, 390, 537
BsuTUI ATCGAT 1 cut(s) 444
BtgI CCRYGG 1 cut(s) 710
BtsCI GGATG 2 cut(s) 358, 671
BtsIMutI CAGTG 4 cut(s) 168, 290, 399, 839
Cac8I GCNNGC 3 cut(s) 190, 550, 945
CfoI GCGC 3 cut(s) 85, 905, 1069
Cfr10I RCCGGY 3 cut(s) 85, 178, 188
Cfr13I GGNCC 2 cut(s) 389, 738
ClaI ATCGAT 1 cut(s) 444
CseI GACGC 1 cut(s) 187
Csp6I GTAC 5 cut(s) 11, 625, 775, 1018, 1042
CviAII CATG 2 cut(s) 376, 711
CviQI GTAC 5 cut(s) 11, 625, 775, 1018, 1042
DdeI CTNAG 5 cut(s) 69, 478, 492, 539, 918
DinI GGCGCC 1 cut(s) 904
DpnI GATC 2 cut(s) 443, 613
DpnII GATC 2 cut(s) 441, 611
DraI TTTAAA 2 cut(s) 648, 817
DrdI GACNNNNNNGTC 1 cut(s) 758
DseDI GACNNNNNNGTC 1 cut(s) 758
EciI GGCGGA 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 710
Eco147I AGGCCT 1 cut(s) 537
Eco31I GGTCTC 1 cut(s) 128
Eco47I GGWCC 1 cut(s) 738
Eco57I CTGAAG 3 cut(s) 144, 245, 833
Eco81I CCTNAGG 1 cut(s) 478
Eco88I CYCGRG 1 cut(s) 193
EcoO109I RGGNCCY 1 cut(s) 738
EcoRII CCWGG 1 cut(s) 684
EcoT14I CCWWGG 1 cut(s) 710
EcoT22I ATGCAT 1 cut(s) 970
EgeI GGCGCC 1 cut(s) 904
EheI GGCGCC 1 cut(s) 904
ErhI CCWWGG 1 cut(s) 710
FaeI CATG 2 cut(s) 379, 714
FaqI GGGAC 1 cut(s) 751
FatI CATG 2 cut(s) 375, 710
Fnu4HI GCNGC 6 cut(s) 129, 318, 321, 524, 948, 1070
FokI GGATG 2 cut(s) 365, 678
Fsp4HI GCNGC 6 cut(s) 129, 318, 321, 524, 948, 1070
FspBI CTAG 1 cut(s) 944
FspI TGCGCA 1 cut(s) 1068
GlaI GCGC 3 cut(s) 84, 904, 1068
GluI GCNGC 6 cut(s) 129, 318, 321, 524, 948, 1070
GsaI CCCAGC 1 cut(s) 789
HaeII RGCGCY 1 cut(s) 906
HaeIII GGCC 3 cut(s) 286, 390, 537
HapII CCGG 4 cut(s) 86, 167, 179, 189
HgaI GACGC 1 cut(s) 187
HhaI GCGC 3 cut(s) 85, 905, 1069
Hin1I GRCGYC 2 cut(s) 5, 903
Hin1II CATG 2 cut(s) 379, 714
Hin6I GCGC 3 cut(s) 83, 903, 1067
HinP1I GCGC 3 cut(s) 83, 903, 1067
HinfI GANTC 3 cut(s) 67, 155, 253
HpaII CCGG 4 cut(s) 86, 167, 179, 189
Hpy166II GTNNAC 3 cut(s) 102, 808, 956
Hpy188I TCNGA 3 cut(s) 66, 493, 877
Hpy188III TCNNGA 2 cut(s) 233, 327
Hpy8I GTNNAC 3 cut(s) 102, 808, 956
HpyAV CCTTC 3 cut(s) 88, 102, 821
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4V TGCA 4 cut(s) 375, 449, 692, 968
HpyF10VI GCNNNNNNNGC 5 cut(s) 271, 689, 725, 980, 989
HpyF3I CTNAG 5 cut(s) 69, 478, 492, 539, 918
Hsp92I GRCGYC 2 cut(s) 5, 903
Hsp92II CATG 2 cut(s) 379, 714
HspAI GCGC 3 cut(s) 83, 903, 1067
KasI GGCGCC 1 cut(s) 902
KflI GGGWCCC 1 cut(s) 738
KroI GCCGGC 1 cut(s) 188
KroNI GCCGGC 1 cut(s) 190
Kzo9I GATC 2 cut(s) 441, 611
LmnI GCTCC 4 cut(s) 224, 314, 643, 997
Lsp1109I GCAGC 5 cut(s) 115, 304, 307, 510, 1081
LweI GCATC 1 cut(s) 436
MaeI CTAG 1 cut(s) 944
MaeIII GTNAC 3 cut(s) 277, 852, 1096
MalI GATC 2 cut(s) 443, 613
MbiI CCGCTC 1 cut(s) 638
MboI GATC 2 cut(s) 441, 611
MboII GAAGA 3 cut(s) 150, 251, 262
MflI RGATCY 1 cut(s) 611
MhlI GDGCHC 2 cut(s) 841, 1086
MluCI AATT 6 cut(s) 331, 450, 471, 578, 676, 795
Mly113I GGCGCC 1 cut(s) 903
MlyI GAGTC 1 cut(s) 61
MmeI TCCRAC 1 cut(s) 89
MnlI CCTC 8 cut(s) 56, 105, 297, 343, 487, 493, 527, 773
Mph1103I ATGCAT 1 cut(s) 970
MroNI GCCGGC 1 cut(s) 188
MseI TTAA 6 cut(s) 219, 453, 647, 816, 1050, 1120
MslI CAYNNNNRTG 2 cut(s) 295, 380
MspA1I CMGCKG 1 cut(s) 265
MspI CCGG 4 cut(s) 86, 167, 179, 189
MspR9I CCNGG 1 cut(s) 686
MvaI CCWGG 1 cut(s) 686
MvnI CGCG 1 cut(s) 83
MwoI GCNNNNNNNGC 5 cut(s) 271, 689, 725, 980, 989
NaeI GCCGGC 1 cut(s) 190
NarI GGCGCC 1 cut(s) 903
NcoI CCATGG 1 cut(s) 710
NdeII GATC 2 cut(s) 441, 611
NgoMIV GCCGGC 1 cut(s) 188
NheI GCTAGC 1 cut(s) 943
NlaIII CATG 2 cut(s) 379, 714
NlaIV GGNNCC 5 cut(s) 177, 613, 739, 740, 904
NmuCI GTSAC 2 cut(s) 852, 1096
NsbI TGCGCA 1 cut(s) 1068
NsiI ATGCAT 1 cut(s) 970
NspI RCATGY 1 cut(s) 379
PaeR7I CTCGAG 1 cut(s) 193
PasI CCCWGGG 1 cut(s) 685
PceI AGGCCT 1 cut(s) 537
PdiI GCCGGC 1 cut(s) 190
PfeI GAWTC 2 cut(s) 155, 253
PflFI GACNNNGTC 2 cut(s) 70, 1034
PkrI GCNGC 6 cut(s) 130, 319, 322, 525, 949, 1071
PleI GAGTC 1 cut(s) 61
PluTI GGCGCC 1 cut(s) 906
PpsI GAGTC 1 cut(s) 61
PpuMI RGGWCCY 1 cut(s) 738
PshBI ATTAAT 1 cut(s) 453
Psp5II RGGWCCY 1 cut(s) 738
Psp6I CCWGG 1 cut(s) 684
PspFI CCCAGC 1 cut(s) 785
PspGI CCWGG 1 cut(s) 684
PspN4I GGNNCC 5 cut(s) 177, 613, 739, 740, 904
PspPI GGNCC 2 cut(s) 389, 738
PspPPI RGGWCCY 1 cut(s) 738
PspXI VCTCGAGB 1 cut(s) 193
PsuI RGATCY 1 cut(s) 611
PsyI GACNNNGTC 2 cut(s) 70, 1034
PvuII CAGCTG 1 cut(s) 265
RsaI GTAC 5 cut(s) 12, 626, 776, 1019, 1043
RsaNI GTAC 5 cut(s) 11, 625, 775, 1018, 1042
RseI CAYNNNNRTG 2 cut(s) 295, 380
SaqAI TTAA 6 cut(s) 219, 453, 647, 816, 1050, 1120
SatI GCNGC 6 cut(s) 129, 318, 321, 524, 948, 1070
Sau3AI GATC 2 cut(s) 441, 611
Sau96I GGNCC 2 cut(s) 389, 738
ScaI AGTACT 1 cut(s) 1019
SchI GAGTC 1 cut(s) 61
ScrFI CCNGG 1 cut(s) 686
SduI GDGCHC 2 cut(s) 841, 1086
SfaNI GCATC 1 cut(s) 436
SfcI CTRYAG 1 cut(s) 861
SfoI GGCGCC 1 cut(s) 904
Sfr274I CTCGAG 1 cut(s) 193
SinI GGWCC 1 cut(s) 738
SlaI CTCGAG 1 cut(s) 193
SmiMI CAYNNNNRTG 2 cut(s) 295, 380
SmlI CTYRAG 2 cut(s) 193, 231
SmoI CTYRAG 2 cut(s) 193, 231
Sse9I AATT 6 cut(s) 331, 450, 471, 578, 676, 795
SseBI AGGCCT 1 cut(s) 537
SsiI CCGC 5 cut(s) 75, 131, 312, 636, 947
SspDI GGCGCC 1 cut(s) 902
SspI AATATT 1 cut(s) 588
SspMI CTAG 1 cut(s) 944
StuI AGGCCT 1 cut(s) 537
StyD4I CCNGG 1 cut(s) 684
StyI CCWWGG 1 cut(s) 710
TaaI ACNGT 1 cut(s) 121
TaqI TCGA 3 cut(s) 41, 194, 444
TaqII GACCGA 4 cut(s) 152, 450, 916, 1076
TasI AATT 6 cut(s) 331, 450, 471, 578, 676, 795
TatI WGTACW 2 cut(s) 774, 1017
TauI GCSGC 1 cut(s) 950
TfiI GAWTC 2 cut(s) 155, 253
Tru1I TTAA 6 cut(s) 219, 453, 647, 816, 1050, 1120
Tru9I TTAA 6 cut(s) 219, 453, 647, 816, 1050, 1120
TscAI CASTG 4 cut(s) 168, 297, 406, 846
TseFI GTSAC 2 cut(s) 852, 1096
TseI GCWGC 5 cut(s) 128, 317, 320, 523, 1069
Tsp45I GTSAC 2 cut(s) 852, 1096
TspDTI ATGAA 2 cut(s) 326, 471
TspGWI ACGGA 1 cut(s) 678
TspRI CASTG 4 cut(s) 168, 297, 406, 846
Tth111I GACNNNGTC 2 cut(s) 70, 1034
VpaK11BI GGWCC 1 cut(s) 738
VspI ATTAAT 1 cut(s) 453
XapI RAATTY 3 cut(s) 331, 578, 676
XceI RCATGY 1 cut(s) 379
XhoI CTCGAG 1 cut(s) 193
XspI CTAG 1 cut(s) 944
ZrmI AGTACT 1 cut(s) 1019
Zsp2I ATGCAT 1 cut(s) 970
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.