Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0010287

Physical Location & Seq

Genomic Coordinates Forward (+)

17150202 .. 17153770

Gene Structure 3569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g14270.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGCGTCCGTACTCAATATGGTGTCGTCTATTAGCCTATCGAACCTCAACGCCGACCGAGTTCGGACTCAGTCCGCCTTCGCGCCGGTTTCGGTTTCGTTTACCAGAAGGAGGCTTACGGTTAGGGCTGCGGAGACCGATACCAACGAAGCAGTTGAATCTTCAGTGCCGGATAAGGCACCGGCTAAAGCCGGTTCGAGCGTCAATCAGCTTCTTGGGATTAAAGGAGCTTCTCAAGAAACTAACAAGTGGAAGATTCGTCTTCAGCTGACAAAGCCTGTAACTTGGCCTCCACTGGTATGGGGAGTAGTTTGCGGAGCTGCTGCTTCTGGAAATTTTCATTGGACTTTTGAGGATGTTGCTAAATCAATAATGTGCATGTGTATGTCTGGCCCTTTACTCACTGGCTATACCCAGACACTAAATGACTGGTATGACCGAGAGATTGATGCAATTAATGAACCTTATCGTCCAATTCCCTCAGGGGCAATATCTGAGAATGAGGTTATTACTCAAATCTGGGTGCTGCTTTTAGGAGGCCTTAGTTTTGCTGGCATATTAGATGTGTGGGCAGGACATAAATTCCCAATATTATTTTACCTTGCTGTGGGTGGATCCTTGCTATCGTACATATATTCCGCTCCACCTTTAAAGCTGAAACAAAACGGATGGATTGGAAATTTTGCCCTGGGTGCAAGTTATATCAGCTTGCCATGGTGGGCTGGTCAGGCATTATTTGGGACCCTTACGCCCGACATAATCGTCCTCACACTCTTGTACAGCATAGCTGGGTTGGGAATTGCTATTGTAAACGACTTTAAAAGTGTTGAAGGAGATAGAGCAATGGGGCTTCAGTCACTCCCTGTAGCTTTTGGTTCTGAAACTGCCAAATGGATTTGTGTTGGCGCCATTGACATCACTCAGTTATCGGTCGCTGGTTATCTGCTATGGGCTGGTAAACCATATTATGCCTTAGCTCTCCTTGCTTTGATAGCTCCCCAAGTCTTTTTCCAGTTCAAGTACTTTCTCAAAGACCCTGTCAAGTACGATGTTAAATATCAGGCAAGTGCGCAGCCGTTTCTTGTGCTCGGTCTTTTAGTAACAGCGTTGGCGACAAGTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

UbiA

Protein Analysis

375

Amino Acids

40.58

Weight (kDa)

8.22

Isoelectric Point (pI)

27.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51820
fragaria_vesca	FvH4_6g11190 FvH4_6g11190 FvH4_6g11190
malus_domestica	MD00G1061800.v1.1 MD12G1171900.v1.1
prunus_persica	Prupe.6G280100_v2.0.a1 Prupe.6G280100_v2.0.a1
pyrus_communis	pycom04g14270 pycom12g16310
rosa_chinensis	RchiOBHm_Chr3g0462631
rosa_laevigata	RLG00000024844
rosa_multiflora	Rmu_co8521225.1_g000001 Rmu_sc0002882.1_g000008
rosa_roxburghii	Rroxscaffold_6G00417340
rosa_rugosa	Rorug03G0058300
rosa_samantha	Rh3AG116400 Rh3BG119900 Rh3CG123100 Rh3DG121800
rosa_wichuraiana	Rw3G009850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	761
Acc16I	TGCGCA	1 cut(s)	1071
AccB1I	GGYRCC	2 cut(s)	178, 905
AccBSI	CCGCTC	1 cut(s)	641
AccII	CGCG	1 cut(s)	83
AciI	CCGC	4 cut(s)	75, 131, 315, 639
AclWI	GGATC	2 cut(s)	609, 622
AcsI	RAATTY	3 cut(s)	334, 581, 679
AcuI	CTGAAG	3 cut(s)	147, 248, 836
AcyI	GRCGYC	2 cut(s)	5, 906
AfaI	GTAC	5 cut(s)	12, 629, 779, 1022, 1046
AfiI	CCNNNNNNNGG	2 cut(s)	111, 607
AgsI	TTSAA	3 cut(s)	158, 830, 1018
AjnI	CCWGG	1 cut(s)	687
AjuI	GAANNNNNNNTTGG	2 cut(s)	325, 357
Alw21I	GWGCWC	1 cut(s)	1089
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	2 cut(s)	609, 622
AoxI	GGCC	3 cut(s)	287, 391, 538
ApeKI	GCWGC	5 cut(s)	128, 320, 323, 526, 1072
ApoI	RAATTY	3 cut(s)	334, 581, 679
ArsI	GACNNNNNNTTYG	2 cut(s)	1023, 1055
AseI	ATTAAT	1 cut(s)	456
AspLEI	GCGC	3 cut(s)	85, 908, 1072
AspS9I	GGNCC	2 cut(s)	392, 741
AvaII	GGWCC	1 cut(s)	741
AxyI	CCTNAGG	1 cut(s)	481
BamHI	GGATCC	1 cut(s)	614
BanI	GGYRCC	2 cut(s)	178, 905
BarI	GAAGNNNNNNTAC	2 cut(s)	100, 132
BbsI	GAAGAC	1 cut(s)	254
Bbv12I	GWGCWC	1 cut(s)	1089
BbvI	GCAGC	5 cut(s)	115, 307, 310, 513, 1084
BccI	CCATC	1 cut(s)	663
BceAI	ACGGC	1 cut(s)	1060
BciT130I	CCWGG	1 cut(s)	689
BcoDI	GTCTC	1 cut(s)	128
BfmI	CTRYAG	1 cut(s)	864
BfoI	RGCGCY	1 cut(s)	909
BisI	GCNGC	5 cut(s)	129, 321, 324, 527, 1073
BlsI	GCNGC	5 cut(s)	130, 322, 325, 528, 1074
BmcAI	AGTACT	1 cut(s)	1022
Bme1390I	CCNGG	1 cut(s)	689
Bme18I	GGWCC	1 cut(s)	741
BmgT120I	GGNCC	2 cut(s)	392, 741
BmiI	GGNNCC	5 cut(s)	180, 616, 742, 743, 907
BmrFI	CCNGG	1 cut(s)	689
BmsI	GCATC	1 cut(s)	439
BpiI	GAAGAC	1 cut(s)	254
Bpu10I	CCTNAGC	1 cut(s)	973
BpuEI	CTTGAG	1 cut(s)	219
BsaHI	GRCGYC	2 cut(s)	5, 906
BsaI	GGTCTC	1 cut(s)	128
BsaJI	CCNNGG	3 cut(s)	687, 688, 713
BsaXI	ACNNNNNCTCC	2 cut(s)	274, 304
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 607
Bse118I	RCCGGY	3 cut(s)	85, 181, 191
Bse1I	ACTGG	4 cut(s)	300, 409, 434, 1012
Bse21I	CCTNAGG	1 cut(s)	481
Bse3DI	GCAATG	1 cut(s)	849
BseBI	CCWGG	1 cut(s)	689
BseDI	CCNNGG	3 cut(s)	687, 688, 713
BseGI	GGATG	2 cut(s)	361, 674
BseLI	CCNNNNNNNGG	2 cut(s)	111, 607
BseMI	GCAATG	1 cut(s)	849
BseMII	CTCAG	4 cut(s)	83, 486, 495, 935
BseNI	ACTGG	4 cut(s)	300, 409, 434, 1012
BseXI	GCAGC	5 cut(s)	115, 307, 310, 513, 1084
BseYI	CCCAGC	1 cut(s)	788
Bsh1236I	CGCG	1 cut(s)	83
Bsh1285I	CGRYCG	2 cut(s)	58, 933
BshFI	GGCC	3 cut(s)	289, 393, 540
BshNI	GGYRCC	2 cut(s)	178, 905
BsiEI	CGRYCG	2 cut(s)	58, 933
BsiHKAI	GWGCWC	1 cut(s)	1089
BsiSI	CCGG	4 cut(s)	86, 170, 182, 192
BslFI	GGGAC	1 cut(s)	754
BslI	CCNNNNNNNGG	2 cut(s)	111, 607
BsmAI	GTCTC	1 cut(s)	128
BsmFI	GGGAC	1 cut(s)	754
BsnI	GGCC	3 cut(s)	289, 393, 540
Bso31I	GGTCTC	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	1089
Bsp1407I	TGTACA	1 cut(s)	777
Bsp143I	GATC	1 cut(s)	614
Bsp19I	CCATGG	1 cut(s)	713
BspACI	CCGC	4 cut(s)	75, 131, 315, 639
BspANI	GGCC	3 cut(s)	289, 393, 540
BspCNI	CTCAG	4 cut(s)	82, 487, 494, 934
BspFNI	CGCG	1 cut(s)	83
BspLI	GGNNCC	5 cut(s)	180, 616, 742, 743, 907
BspPI	GGATC	2 cut(s)	609, 622
BspT107I	GGYRCC	2 cut(s)	178, 905
BspTNI	GGTCTC	1 cut(s)	128
BsrBI	CCGCTC	1 cut(s)	641
BsrDI	GCAATG	1 cut(s)	849
BsrFI	RCCGGY	3 cut(s)	85, 181, 191
BsrGI	TGTACA	1 cut(s)	777
BsrI	ACTGG	4 cut(s)	300, 409, 434, 1012
BssAI	RCCGGY	3 cut(s)	85, 181, 191
BssECI	CCNNGG	3 cut(s)	687, 688, 713
BssMI	GATC	1 cut(s)	614
BssNI	GRCGYC	2 cut(s)	5, 906
BssT1I	CCWWGG	1 cut(s)	713
Bst2UI	CCWGG	1 cut(s)	689
Bst4CI	ACNGT	1 cut(s)	121
BstACI	GRCGYC	2 cut(s)	5, 906
BstAUI	TGTACA	1 cut(s)	777
BstC8I	GCNNGC	2 cut(s)	553, 710
BstDEI	CTNAG	6 cut(s)	69, 481, 495, 542, 921, 973
BstDSI	CCRYGG	1 cut(s)	713
BstF5I	GGATG	2 cut(s)	361, 674
BstFNI	CGCG	1 cut(s)	83
BstH2I	RGCGCY	1 cut(s)	909
BstHHI	GCGC	3 cut(s)	85, 908, 1072
BstKTI	GATC	1 cut(s)	617
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	1 cut(s)	614
BstMCI	CGRYCG	2 cut(s)	58, 933
BstMWI	GCNNNNNNNGC	5 cut(s)	274, 692, 728, 983, 992
BstNI	CCWGG	1 cut(s)	689
BstNSI	RCATGY	1 cut(s)	382
BstSCI	CCNGG	1 cut(s)	687
BstSFI	CTRYAG	1 cut(s)	864
BstUI	CGCG	1 cut(s)	83
BstV1I	GCAGC	5 cut(s)	115, 307, 310, 513, 1084
BstV2I	GAAGAC	1 cut(s)	254
BstX2I	RGATCY	1 cut(s)	614
BstXI	CCANNNNNNTGG	1 cut(s)	300
BstYI	RGATCY	1 cut(s)	614
Bsu36I	CCTNAGG	1 cut(s)	481
BsuRI	GGCC	3 cut(s)	289, 393, 540
BtgI	CCRYGG	1 cut(s)	713
BtsCI	GGATG	2 cut(s)	361, 674
BtsIMutI	CAGTG	3 cut(s)	171, 293, 402
Cac8I	GCNNGC	2 cut(s)	553, 710
CfoI	GCGC	3 cut(s)	85, 908, 1072
Cfr10I	RCCGGY	3 cut(s)	85, 181, 191
Cfr13I	GGNCC	2 cut(s)	392, 741
CseI	GACGC	1 cut(s)	190
Csp6I	GTAC	5 cut(s)	11, 628, 778, 1021, 1045
CviAII	CATG	2 cut(s)	379, 714
CviQI	GTAC	5 cut(s)	11, 628, 778, 1021, 1045
DdeI	CTNAG	6 cut(s)	69, 481, 495, 542, 921, 973
DinI	GGCGCC	1 cut(s)	907
DpnI	GATC	1 cut(s)	616
DpnII	GATC	1 cut(s)	614
DraI	TTTAAA	2 cut(s)	651, 820
DrdI	GACNNNNNNGTC	1 cut(s)	761
DseDI	GACNNNNNNGTC	1 cut(s)	761
EciI	GGCGGA	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	713
Eco147I	AGGCCT	1 cut(s)	540
Eco31I	GGTCTC	1 cut(s)	128
Eco47I	GGWCC	1 cut(s)	741
Eco57I	CTGAAG	3 cut(s)	147, 248, 836
Eco81I	CCTNAGG	1 cut(s)	481
EcoO109I	RGGNCCY	1 cut(s)	741
EcoRII	CCWGG	1 cut(s)	687
EcoT14I	CCWWGG	1 cut(s)	713
EgeI	GGCGCC	1 cut(s)	907
EheI	GGCGCC	1 cut(s)	907
ErhI	CCWWGG	1 cut(s)	713
FaeI	CATG	2 cut(s)	382, 717
FaqI	GGGAC	1 cut(s)	754
FatI	CATG	2 cut(s)	378, 713
Fnu4HI	GCNGC	5 cut(s)	129, 321, 324, 527, 1073
FokI	GGATG	2 cut(s)	368, 681
Fsp4HI	GCNGC	5 cut(s)	129, 321, 324, 527, 1073
FspI	TGCGCA	1 cut(s)	1071
GlaI	GCGC	3 cut(s)	84, 907, 1071
GluI	GCNGC	5 cut(s)	129, 321, 324, 527, 1073
GsaI	CCCAGC	1 cut(s)	792
HaeII	RGCGCY	1 cut(s)	909
HaeIII	GGCC	3 cut(s)	289, 393, 540
HapII	CCGG	4 cut(s)	86, 170, 182, 192
HgaI	GACGC	1 cut(s)	190
HhaI	GCGC	3 cut(s)	85, 908, 1072
Hin1I	GRCGYC	2 cut(s)	5, 906
Hin1II	CATG	2 cut(s)	382, 717
Hin6I	GCGC	3 cut(s)	83, 906, 1070
HinP1I	GCGC	3 cut(s)	83, 906, 1070
HinfI	GANTC	3 cut(s)	67, 158, 256
HpaII	CCGG	4 cut(s)	86, 170, 182, 192
Hpy166II	GTNNAC	3 cut(s)	102, 811, 959
Hpy188I	TCNGA	3 cut(s)	66, 496, 880
Hpy188III	TCNNGA	2 cut(s)	236, 330
Hpy8I	GTNNAC	3 cut(s)	102, 811, 959
HpyAV	CCTTC	3 cut(s)	88, 102, 824
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4V	TGCA	3 cut(s)	378, 452, 695
HpyF10VI	GCNNNNNNNGC	5 cut(s)	274, 692, 728, 983, 992
HpyF3I	CTNAG	6 cut(s)	69, 481, 495, 542, 921, 973
Hsp92I	GRCGYC	2 cut(s)	5, 906
Hsp92II	CATG	2 cut(s)	382, 717
HspAI	GCGC	3 cut(s)	83, 906, 1070
KasI	GGCGCC	1 cut(s)	905
KflI	GGGWCCC	1 cut(s)	741
Kzo9I	GATC	1 cut(s)	614
LmnI	GCTCC	4 cut(s)	227, 317, 646, 1000
Lsp1109I	GCAGC	5 cut(s)	115, 307, 310, 513, 1084
LweI	GCATC	1 cut(s)	439
MaeIII	GTNAC	3 cut(s)	280, 855, 1099
MalI	GATC	1 cut(s)	616
MbiI	CCGCTC	1 cut(s)	641
MboI	GATC	1 cut(s)	614
MboII	GAAGA	3 cut(s)	153, 254, 265
MflI	RGATCY	1 cut(s)	614
MhlI	GDGCHC	1 cut(s)	1089
MluCI	AATT	6 cut(s)	334, 453, 474, 581, 679, 798
Mly113I	GGCGCC	1 cut(s)	906
MlyI	GAGTC	1 cut(s)	61
MnlI	CCTC	8 cut(s)	56, 105, 300, 346, 490, 496, 530, 776
MseI	TTAA	6 cut(s)	222, 456, 650, 819, 1053, 1123
MslI	CAYNNNNRTG	2 cut(s)	298, 383
MspA1I	CMGCKG	1 cut(s)	268
MspI	CCGG	4 cut(s)	86, 170, 182, 192
MspR9I	CCNGG	1 cut(s)	689
MvaI	CCWGG	1 cut(s)	689
MvnI	CGCG	1 cut(s)	83
MwoI	GCNNNNNNNGC	5 cut(s)	274, 692, 728, 983, 992
NarI	GGCGCC	1 cut(s)	906
NcoI	CCATGG	1 cut(s)	713
NdeII	GATC	1 cut(s)	614
NlaIII	CATG	2 cut(s)	382, 717
NlaIV	GGNNCC	5 cut(s)	180, 616, 742, 743, 907
NmuCI	GTSAC	1 cut(s)	855
NsbI	TGCGCA	1 cut(s)	1071
NspI	RCATGY	1 cut(s)	382
PasI	CCCWGGG	1 cut(s)	688
PceI	AGGCCT	1 cut(s)	540
PfeI	GAWTC	2 cut(s)	158, 256
PflFI	GACNNNGTC	2 cut(s)	70, 1037
PkrI	GCNGC	5 cut(s)	130, 322, 325, 528, 1074
PleI	GAGTC	1 cut(s)	61
PluTI	GGCGCC	1 cut(s)	909
PpsI	GAGTC	1 cut(s)	61
PpuMI	RGGWCCY	1 cut(s)	741
PshBI	ATTAAT	1 cut(s)	456
Psp5II	RGGWCCY	1 cut(s)	741
Psp6I	CCWGG	1 cut(s)	687
PspFI	CCCAGC	1 cut(s)	788
PspGI	CCWGG	1 cut(s)	687
PspN4I	GGNNCC	5 cut(s)	180, 616, 742, 743, 907
PspPI	GGNCC	2 cut(s)	392, 741
PspPPI	RGGWCCY	1 cut(s)	741
PsuI	RGATCY	1 cut(s)	614
PsyI	GACNNNGTC	2 cut(s)	70, 1037
PvuII	CAGCTG	1 cut(s)	268
RsaI	GTAC	5 cut(s)	12, 629, 779, 1022, 1046
RsaNI	GTAC	5 cut(s)	11, 628, 778, 1021, 1045
RseI	CAYNNNNRTG	2 cut(s)	298, 383
SaqAI	TTAA	6 cut(s)	222, 456, 650, 819, 1053, 1123
SatI	GCNGC	5 cut(s)	129, 321, 324, 527, 1073
Sau3AI	GATC	1 cut(s)	614
Sau96I	GGNCC	2 cut(s)	392, 741
ScaI	AGTACT	1 cut(s)	1022
SchI	GAGTC	1 cut(s)	61
ScrFI	CCNGG	1 cut(s)	689
SduI	GDGCHC	1 cut(s)	1089
SfaNI	GCATC	1 cut(s)	439
SfcI	CTRYAG	1 cut(s)	864
SfoI	GGCGCC	1 cut(s)	907
SinI	GGWCC	1 cut(s)	741
SmiMI	CAYNNNNRTG	2 cut(s)	298, 383
SmlI	CTYRAG	1 cut(s)	234
SmoI	CTYRAG	1 cut(s)	234
Sse9I	AATT	6 cut(s)	334, 453, 474, 581, 679, 798
SseBI	AGGCCT	1 cut(s)	540
SsiI	CCGC	4 cut(s)	75, 131, 315, 639
SspDI	GGCGCC	1 cut(s)	905
SspI	AATATT	1 cut(s)	591
StuI	AGGCCT	1 cut(s)	540
StyD4I	CCNGG	1 cut(s)	687
StyI	CCWWGG	1 cut(s)	713
TaaI	ACNGT	1 cut(s)	121
TaqI	TCGA	2 cut(s)	41, 197
TaqII	GACCGA	5 cut(s)	72, 152, 453, 919, 1079
TasI	AATT	6 cut(s)	334, 453, 474, 581, 679, 798
TatI	WGTACW	2 cut(s)	777, 1020
TfiI	GAWTC	2 cut(s)	158, 256
Tru1I	TTAA	6 cut(s)	222, 456, 650, 819, 1053, 1123
Tru9I	TTAA	6 cut(s)	222, 456, 650, 819, 1053, 1123
TscAI	CASTG	3 cut(s)	171, 300, 409
TseFI	GTSAC	1 cut(s)	855
TseI	GCWGC	5 cut(s)	128, 320, 323, 526, 1072
Tsp45I	GTSAC	1 cut(s)	855
TspDTI	ATGAA	2 cut(s)	329, 474
TspGWI	ACGGA	1 cut(s)	681
TspRI	CASTG	3 cut(s)	171, 300, 409
Tth111I	GACNNNGTC	2 cut(s)	70, 1037
VpaK11BI	GGWCC	1 cut(s)	741
VspI	ATTAAT	1 cut(s)	456
XapI	RAATTY	3 cut(s)	334, 581, 679
XceI	RCATGY	1 cut(s)	382
ZrmI	AGTACT	1 cut(s)	1022

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.