Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0010287

Physical Location & Seq

Genomic Coordinates Forward (+)

18689633 .. 18693402

Gene Structure 3770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g16310.14

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGCGTCCGTGCTCAATACGGTGTCGTCTATCACCTTATCGAAGCTCAACACCAACCGAGTTCGGGCTCAGTCCGCCTTCGCGCCGGTTTCCGTTTCGTTTACCAGAAGGAGGCTTACTGTAAGGGCTGCGGAGACCGATACGAACGAAGTACCGGATAAGGCACCTGCGAAAGGCGGTTCGAGCTTCAATCAGCTTCTGGGGATTAAAGGAGCTTCAAAGGAAACTAACACATGGAAGATTAGGCTTCAGCTGACAAAACCTGTAACTTGGCCTCCACTGGTATGGGGAGTAGTTTGCGGAGCTGCTGCTTCTGGAAATTTTCATTGGAGTTTCGAGGACGTTGCTAAATCAATAATGTGCATGTGCATGTCCGGCCCTTTTCTCACTGGTTATACCCAGACTCTGAATGATTGGTATGACCGAGAGATTGATGCAATTAACGAACCTTATCGTCCAATTCCCTCAGGGGCAATATCTGAGAATGAGGTTATTGCTCAAATATGGGTGCTGCTTTTAGGAGGCCTTAGCTTTGCTGGTATATTAGATGTGTGGGCAGGACATAACTTCCCAATATTATTTTACCTTGCTTTGGGTGGATCCTTGCTATCATACATTTACTCCGCTCCACCTTTAAAGCTGAAACAAAATGGATGGATTGGAAATTTTGCCCTTGGTGCAAGTTATATCAGTTTGCCATGGTGGGCTGGTCAGGCATTATTTGGGACCCTCACACCTGACATAATCGTCCTCACACTCTTGTATAGCATAGCTGGGTTGGGAATTGCTATTGTAAACGATTTTAAAAGTGTTGAAGGAGATAGAGAACTGGGACTTCAGTCACTCCCTGTAGCTTTTGGTTCTGAAACTGCCAAATGGATTTGCGTTGGTGCCATTGACATCACTCAGTTATCAATTGTTGGTTATCTGCTAGGGGCTGGTAAACCATATTATGCATTGGCTCTCCTTGCTTTGATAGGTCCTCAAGTCTTTTTCCAGTTCAAGTACTTTCTCAAAGACCCCGTCAAGTACGATGTTAAATATCAGGCCAGTGCGCAGCCGTTTCTCGTGCTCGGTCTTTTAGTAACAGCATTGGCGACAAGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

UbiA

Protein Analysis

370

Amino Acids

40.04

Weight (kDa)

8.53

Isoelectric Point (pI)

23.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51820
fragaria_vesca	FvH4_6g11190 FvH4_6g11190 FvH4_6g11190
malus_domestica	MD00G1061800.v1.1 MD12G1171900.v1.1
prunus_persica	Prupe.6G280100_v2.0.a1 Prupe.6G280100_v2.0.a1
pyrus_communis	pycom04g14270 pycom12g16310
rosa_chinensis	RchiOBHm_Chr3g0462631
rosa_laevigata	RLG00000024844
rosa_multiflora	Rmu_co8521225.1_g000001 Rmu_sc0002882.1_g000008
rosa_roxburghii	Rroxscaffold_6G00417340
rosa_rugosa	Rorug03G0058300
rosa_samantha	Rh3AG116400 Rh3BG119900 Rh3CG123100 Rh3DG121800
rosa_wichuraiana	Rw3G009850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	175
AasI	GACNNNNNNGTC	1 cut(s)	746
Acc16I	TGCGCA	1 cut(s)	1056
Acc36I	ACCTGC	1 cut(s)	175
AccB1I	GGYRCC	2 cut(s)	163, 890
AccBSI	CCGCTC	1 cut(s)	626
AccII	CGCG	1 cut(s)	83
AciI	CCGC	5 cut(s)	75, 131, 177, 300, 624
AclWI	GGATC	2 cut(s)	594, 607
AcsI	RAATTY	2 cut(s)	319, 664
AcuI	CTGAAG	2 cut(s)	233, 821
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	153, 1007, 1031
AfiI	CCNNNNNNNGG	4 cut(s)	64, 111, 173, 592
AgsI	TTSAA	4 cut(s)	190, 219, 815, 1003
AjuI	GAANNNNNNNTTGG	2 cut(s)	310, 342
Alw21I	GWGCWC	2 cut(s)	15, 1074
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	2 cut(s)	594, 607
AlwNI	CAGNNNCTG	2 cut(s)	199, 406
AoxI	GGCC	4 cut(s)	272, 376, 523, 1047
ApeKI	GCWGC	5 cut(s)	128, 305, 308, 511, 1057
ApoI	RAATTY	2 cut(s)	319, 664
ArsI	GACNNNNNNTTYG	2 cut(s)	1008, 1040
AspLEI	GCGC	2 cut(s)	85, 1057
AspS9I	GGNCC	3 cut(s)	377, 726, 980
AsuHPI	GGTGA	1 cut(s)	25
AvaII	GGWCC	2 cut(s)	726, 980
AxyI	CCTNAGG	1 cut(s)	466
BamHI	GGATCC	1 cut(s)	599
BanI	GGYRCC	2 cut(s)	163, 890
BanII	GRGCYC	1 cut(s)	70
BarI	GAAGNNNNNNTAC	2 cut(s)	100, 132
BauI	CACGAG	1 cut(s)	1067
Bbv12I	GWGCWC	2 cut(s)	15, 1074
BbvI	GCAGC	5 cut(s)	115, 292, 295, 498, 1069
BccI	CCATC	1 cut(s)	648
BceAI	ACGGC	1 cut(s)	1045
BcgI	CGANNNNNNTGC	2 cut(s)	326, 360
BcoDI	GTCTC	1 cut(s)	128
BfaI	CTAG	1 cut(s)	932
BfmI	CTRYAG	1 cut(s)	849
BfuAI	ACCTGC	1 cut(s)	175
BisI	GCNGC	5 cut(s)	129, 306, 309, 512, 1058
BlsI	GCNGC	5 cut(s)	130, 307, 310, 513, 1059
BmcAI	AGTACT	1 cut(s)	1007
Bme18I	GGWCC	2 cut(s)	726, 980
BmgT120I	GGNCC	3 cut(s)	377, 726, 980
BmiI	GGNNCC	5 cut(s)	165, 601, 727, 728, 892
BmrI	ACTGGG	1 cut(s)	839
BmsI	GCATC	1 cut(s)	424
BmuI	ACTGGG	1 cut(s)	839
BoxI	GACNNNNGTC	1 cut(s)	838
Bpu10I	CCTNAGC	1 cut(s)	527
BpuEI	CTTGAG	1 cut(s)	969
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	128
BsaJI	CCNNGG	2 cut(s)	673, 698
BsaWI	WCCGGW	1 cut(s)	154
BsaXI	ACNNNNNCTCC	4 cut(s)	259, 289, 605, 635
Bsc4I	CCNNNNNNNGG	4 cut(s)	64, 111, 173, 592
Bse118I	RCCGGY	1 cut(s)	85
Bse1I	ACTGG	5 cut(s)	285, 394, 834, 997, 1050
Bse21I	CCTNAGG	1 cut(s)	466
BseDI	CCNNGG	2 cut(s)	673, 698
BseGI	GGATG	1 cut(s)	659
BseLI	CCNNNNNNNGG	4 cut(s)	64, 111, 173, 592
BseMII	CTCAG	4 cut(s)	83, 471, 480, 920
BseNI	ACTGG	5 cut(s)	285, 394, 834, 997, 1050
BseXI	GCAGC	5 cut(s)	115, 292, 295, 498, 1069
BseYI	CCCAGC	1 cut(s)	773
Bsh1236I	CGCG	1 cut(s)	83
BshFI	GGCC	4 cut(s)	274, 378, 525, 1049
BshNI	GGYRCC	2 cut(s)	163, 890
BsiHKAI	GWGCWC	2 cut(s)	15, 1074
BsiSI	CCGG	3 cut(s)	86, 155, 375
BslFI	GGGAC	2 cut(s)	739, 846
BslI	CCNNNNNNNGG	4 cut(s)	64, 111, 173, 592
BsmAI	GTCTC	1 cut(s)	128
BsmFI	GGGAC	2 cut(s)	739, 846
BsnI	GGCC	4 cut(s)	274, 378, 525, 1049
Bso31I	GGTCTC	1 cut(s)	128
Bsp1286I	GDGCHC	3 cut(s)	15, 70, 1074
Bsp143I	GATC	1 cut(s)	599
Bsp19I	CCATGG	1 cut(s)	698
BspACI	CCGC	5 cut(s)	75, 131, 177, 300, 624
BspANI	GGCC	4 cut(s)	274, 378, 525, 1049
BspCNI	CTCAG	4 cut(s)	82, 472, 479, 919
BspFNI	CGCG	1 cut(s)	83
BspLI	GGNNCC	5 cut(s)	165, 601, 727, 728, 892
BspMI	ACCTGC	1 cut(s)	175
BspPI	GGATC	2 cut(s)	594, 607
BspT107I	GGYRCC	2 cut(s)	163, 890
BspTNI	GGTCTC	1 cut(s)	128
BsrBI	CCGCTC	1 cut(s)	626
BsrFI	RCCGGY	1 cut(s)	85
BsrI	ACTGG	5 cut(s)	285, 394, 834, 997, 1050
BssAI	RCCGGY	1 cut(s)	85
BssECI	CCNNGG	2 cut(s)	673, 698
BssMI	GATC	1 cut(s)	599
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	1067
BssT1I	CCWWGG	2 cut(s)	673, 698
Bst2BI	CACGAG	1 cut(s)	1067
Bst4CI	ACNGT	2 cut(s)	22, 121
BstACI	GRCGYC	1 cut(s)	5
BstDEI	CTNAG	5 cut(s)	69, 466, 480, 527, 906
BstDSI	CCRYGG	1 cut(s)	698
BstENI	CCTNNNNNAGG	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	659
BstFNI	CGCG	1 cut(s)	83
BstHHI	GCGC	2 cut(s)	85, 1057
BstKTI	GATC	1 cut(s)	602
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	1 cut(s)	599
BstMWI	GCNNNNNNNGC	6 cut(s)	74, 183, 375, 677, 713, 968
BstNSI	RCATGY	2 cut(s)	367, 373
BstPAI	GACNNNNGTC	1 cut(s)	838
BstSFI	CTRYAG	1 cut(s)	849
BstUI	CGCG	1 cut(s)	83
BstV1I	GCAGC	5 cut(s)	115, 292, 295, 498, 1069
BstX2I	RGATCY	1 cut(s)	599
BstXI	CCANNNNNNTGG	1 cut(s)	285
BstYI	RGATCY	1 cut(s)	599
Bsu36I	CCTNAGG	1 cut(s)	466
BsuRI	GGCC	4 cut(s)	274, 378, 525, 1049
BtgI	CCRYGG	1 cut(s)	698
BtsCI	GGATG	1 cut(s)	659
BtsIMutI	CAGTG	3 cut(s)	278, 387, 1057
BveI	ACCTGC	1 cut(s)	175
CaiI	CAGNNNCTG	2 cut(s)	199, 406
CfoI	GCGC	2 cut(s)	85, 1057
Cfr10I	RCCGGY	1 cut(s)	85
Cfr13I	GGNCC	3 cut(s)	377, 726, 980
Csp6I	GTAC	3 cut(s)	152, 1006, 1030
CviAII	CATG	4 cut(s)	234, 364, 370, 699
CviQI	GTAC	3 cut(s)	152, 1006, 1030
DdeI	CTNAG	5 cut(s)	69, 466, 480, 527, 906
DpnI	GATC	1 cut(s)	601
DpnII	GATC	1 cut(s)	599
DraI	TTTAAA	2 cut(s)	636, 805
DrdI	GACNNNNNNGTC	1 cut(s)	746
DseDI	GACNNNNNNGTC	1 cut(s)	746
EciI	GGCGGA	1 cut(s)	64
Eco130I	CCWWGG	2 cut(s)	673, 698
Eco147I	AGGCCT	1 cut(s)	525
Eco24I	GRGCYC	1 cut(s)	70
Eco31I	GGTCTC	1 cut(s)	128
Eco47I	GGWCC	2 cut(s)	726, 980
Eco57I	CTGAAG	2 cut(s)	233, 821
Eco81I	CCTNAGG	1 cut(s)	466
EcoNI	CCTNNNNNAGG	1 cut(s)	171
EcoO109I	RGGNCCY	2 cut(s)	726, 980
EcoT14I	CCWWGG	2 cut(s)	673, 698
EcoT22I	ATGCAT	1 cut(s)	958
EcoT38I	GRGCYC	1 cut(s)	70
ErhI	CCWWGG	2 cut(s)	673, 698
FaeI	CATG	4 cut(s)	237, 367, 373, 702
FaqI	GGGAC	2 cut(s)	739, 846
FatI	CATG	4 cut(s)	233, 363, 369, 698
Fnu4HI	GCNGC	5 cut(s)	129, 306, 309, 512, 1058
FokI	GGATG	1 cut(s)	666
FriOI	GRGCYC	1 cut(s)	70
Fsp4HI	GCNGC	5 cut(s)	129, 306, 309, 512, 1058
FspBI	CTAG	1 cut(s)	932
FspI	TGCGCA	1 cut(s)	1056
GlaI	GCGC	2 cut(s)	84, 1056
GluI	GCNGC	5 cut(s)	129, 306, 309, 512, 1058
GsaI	CCCAGC	1 cut(s)	777
HaeIII	GGCC	4 cut(s)	274, 378, 525, 1049
HapII	CCGG	3 cut(s)	86, 155, 375
HhaI	GCGC	2 cut(s)	85, 1057
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	237, 367, 373, 702
Hin6I	GCGC	2 cut(s)	83, 1055
HinP1I	GCGC	2 cut(s)	83, 1055
HinfI	GANTC	1 cut(s)	403
HpaII	CCGG	3 cut(s)	86, 155, 375
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	3 cut(s)	102, 796, 944
Hpy188I	TCNGA	3 cut(s)	408, 481, 865
Hpy188III	TCNNGA	1 cut(s)	315
Hpy8I	GTNNAC	3 cut(s)	102, 796, 944
HpyAV	CCTTC	3 cut(s)	88, 102, 809
HpyCH4III	ACNGT	2 cut(s)	22, 121
HpyCH4IV	ACGT	1 cut(s)	342
HpyCH4V	TGCA	5 cut(s)	363, 369, 437, 680, 956
HpyF10VI	GCNNNNNNNGC	6 cut(s)	74, 183, 375, 677, 713, 968
HpyF3I	CTNAG	5 cut(s)	69, 466, 480, 527, 906
HpySE526I	ACGT	1 cut(s)	342
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	237, 367, 373, 702
HspAI	GCGC	2 cut(s)	83, 1055
KflI	GGGWCCC	1 cut(s)	726
Kzo9I	GATC	1 cut(s)	599
LmnI	GCTCC	3 cut(s)	212, 302, 631
Lsp1109I	GCAGC	5 cut(s)	115, 292, 295, 498, 1069
LweI	GCATC	1 cut(s)	424
MaeI	CTAG	1 cut(s)	932
MaeII	ACGT	1 cut(s)	342
MaeIII	GTNAC	3 cut(s)	265, 840, 1084
MalI	GATC	1 cut(s)	601
MbiI	CCGCTC	1 cut(s)	626
MboI	GATC	1 cut(s)	599
MboII	GAAGA	1 cut(s)	250
MfeI	CAATTG	1 cut(s)	915
MflI	RGATCY	1 cut(s)	599
MhlI	GDGCHC	3 cut(s)	15, 70, 1074
MluCI	AATT	6 cut(s)	319, 438, 459, 664, 783, 915
MlyI	GAGTC	1 cut(s)	397
MnlI	CCTC	9 cut(s)	105, 285, 331, 475, 481, 515, 740, 761, 993
Mph1103I	ATGCAT	1 cut(s)	958
MseI	TTAA	5 cut(s)	207, 441, 635, 804, 1038
MslI	CAYNNNNRTG	2 cut(s)	283, 368
MspA1I	CMGCKG	1 cut(s)	253
MspI	CCGG	3 cut(s)	86, 155, 375
MunI	CAATTG	1 cut(s)	915
MvnI	CGCG	1 cut(s)	83
MwoI	GCNNNNNNNGC	6 cut(s)	74, 183, 375, 677, 713, 968
NcoI	CCATGG	1 cut(s)	698
NdeII	GATC	1 cut(s)	599
NlaIII	CATG	4 cut(s)	237, 367, 373, 702
NlaIV	GGNNCC	5 cut(s)	165, 601, 727, 728, 892
NmuCI	GTSAC	1 cut(s)	840
NsbI	TGCGCA	1 cut(s)	1056
NsiI	ATGCAT	1 cut(s)	958
NspI	RCATGY	2 cut(s)	367, 373
PaqCI	CACCTGC	1 cut(s)	175
PceI	AGGCCT	1 cut(s)	525
PflFI	GACNNNGTC	1 cut(s)	1022
PkrI	GCNGC	5 cut(s)	130, 307, 310, 513, 1059
PleI	GAGTC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	397
PpuMI	RGGWCCY	2 cut(s)	726, 980
PshAI	GACNNNNGTC	1 cut(s)	838
Psp5II	RGGWCCY	2 cut(s)	726, 980
PspFI	CCCAGC	1 cut(s)	773
PspN4I	GGNNCC	5 cut(s)	165, 601, 727, 728, 892
PspPI	GGNCC	3 cut(s)	377, 726, 980
PspPPI	RGGWCCY	2 cut(s)	726, 980
PstNI	CAGNNNCTG	2 cut(s)	199, 406
PsuI	RGATCY	1 cut(s)	599
PsyI	GACNNNGTC	1 cut(s)	1022
PvuII	CAGCTG	1 cut(s)	253
RsaI	GTAC	3 cut(s)	153, 1007, 1031
RsaNI	GTAC	3 cut(s)	152, 1006, 1030
RseI	CAYNNNNRTG	2 cut(s)	283, 368
SaqAI	TTAA	5 cut(s)	207, 441, 635, 804, 1038
SatI	GCNGC	5 cut(s)	129, 306, 309, 512, 1058
Sau3AI	GATC	1 cut(s)	599
Sau96I	GGNCC	3 cut(s)	377, 726, 980
ScaI	AGTACT	1 cut(s)	1007
SchI	GAGTC	1 cut(s)	397
SduI	GDGCHC	3 cut(s)	15, 70, 1074
SfaNI	GCATC	1 cut(s)	424
SfcI	CTRYAG	1 cut(s)	849
SinI	GGWCC	2 cut(s)	726, 980
SmiMI	CAYNNNNRTG	2 cut(s)	283, 368
SmlI	CTYRAG	1 cut(s)	984
SmoI	CTYRAG	1 cut(s)	984
Sse9I	AATT	6 cut(s)	319, 438, 459, 664, 783, 915
SseBI	AGGCCT	1 cut(s)	525
SsiI	CCGC	5 cut(s)	75, 131, 177, 300, 624
SspI	AATATT	1 cut(s)	576
SspMI	CTAG	1 cut(s)	932
StuI	AGGCCT	1 cut(s)	525
StyI	CCWWGG	2 cut(s)	673, 698
TaaI	ACNGT	2 cut(s)	22, 121
TaiI	ACGT	1 cut(s)	345
TaqI	TCGA	3 cut(s)	41, 182, 336
TaqII	GACCGA	3 cut(s)	152, 438, 1064
TasI	AATT	6 cut(s)	319, 438, 459, 664, 783, 915
TatI	WGTACW	1 cut(s)	1005
Tru1I	TTAA	5 cut(s)	207, 441, 635, 804, 1038
Tru9I	TTAA	5 cut(s)	207, 441, 635, 804, 1038
TscAI	CASTG	3 cut(s)	285, 394, 1057
TseFI	GTSAC	1 cut(s)	840
TseI	GCWGC	5 cut(s)	128, 305, 308, 511, 1057
Tsp45I	GTSAC	1 cut(s)	840
TspDTI	ATGAA	1 cut(s)	314
TspGWI	ACGGA	1 cut(s)	82
TspRI	CASTG	3 cut(s)	285, 394, 1057
Tth111I	GACNNNGTC	1 cut(s)	1022
VpaK11BI	GGWCC	2 cut(s)	726, 980
XagI	CCTNNNNNAGG	1 cut(s)	171
XapI	RAATTY	2 cut(s)	319, 664
XceI	RCATGY	2 cut(s)	367, 373
XspI	CTAG	1 cut(s)	932
ZrmI	AGTACT	1 cut(s)	1007
Zsp2I	ATGCAT	1 cut(s)	958

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.