Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0010287

Physical Location & Seq

Genomic Coordinates Reverse (-)

4389630 .. 4391662

Gene Structure 2033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0058300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGTTGCTAAAACCCCACCAAAGCAGAGGAAGATGGTAGCCCCTCTCAATCCAGCTCTGCTTAGAGAAACAGTGAAGAAGGTGGATAGGTGTATGGCTAGGTTGCAGGAGCTACAGTACACAGTGACAGGTGGGACGAAGGTGATCTCGGGAGTGAGTCTCAGCCCGAGAAGTACTAGAGCTTATCTGAGGACTAGTCTTAGATGCAAACAAGAATCTGCAAGGATTAAAGGTTTGACGCCGAGGAAATCTCCGGTGGGGAAGTTTCCGGCTGGGAAGTCTCCGGCAAAGTCAGCAGGGGAATGGCAGAGAATGTCACTGCCGGCAATGCTGCTCAGCGAAACAGTCGGAGAAATTCTTCATTCAAGTCAATTTGCAAGAGAAATAGTAGCATCAGTCCCCAAGAAAACCACCATAGAAGACCCCAAAACCCCAATGACCCAACAGAGGAAACAGAGACCGCCCCCTGAAAACACAGAGCTCAGGGCCAGAAGAAAGAAGGAGAAGCACAACAAATCTCAATCCAACCGATCAGAATCCGGCTCCCCGGTGCTCCAACGAGCCCGGTCCCGAATTAACTTCAAGGTTTCTCCTCCTAAGAAGAGAGAGATAGAGAGAGAGAACACCAGATACTTGGCAAACAGAGTGTCTCCCAAAAACAGACCATGGGCTAAAAAGAGTGTATTGTTTCCCAACCCTTTGTTTTCGGCCACAGATACTTCACCTCAGCAAAAGAAGTTTTGTAGAACAAGGTCACCAATGATTGGAAGAAGTACTAACAATACTAAACCTCAGACTCAGCAGATTCAGACTCCACACAAGTTCTTGATCAAGTCTCCAGCTTCGGCTTCAAAGTTCCAGGTCAAGATTAAGAGCCCTCCATTGGTTTCTTCTCTTTCGCCAAATAAGGCCAAGAAGTCTCCGAAGAAATCTGCTGTCTCGAAACTGCGGCGGTCATTTTCTCCGTCGAGATTGGCTACTAGATTGGTGTCTCTGTCTCCATTGAAGAGCAGGAAGAGTGTGCAGAAGAGTGAAGGACTAATAATGCCGGGTTTGAAACAGCGTCCAACTTCCTCAATGCCACTGGGAGTTTCAGCTCGGAGGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

UbiA

Protein Analysis

369

Amino Acids

41.28

Weight (kDa)

11.68

Isoelectric Point (pI)

73.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51820
fragaria_vesca	FvH4_6g11190 FvH4_6g11190 FvH4_6g11190
malus_domestica	MD00G1061800.v1.1 MD12G1171900.v1.1
prunus_persica	Prupe.6G280100_v2.0.a1 Prupe.6G280100_v2.0.a1
pyrus_communis	pycom04g14270 pycom12g16310
rosa_chinensis	RchiOBHm_Chr3g0462631
rosa_laevigata	RLG00000024844
rosa_multiflora	Rmu_co8521225.1_g000001 Rmu_sc0002882.1_g000008
rosa_roxburghii	Rroxscaffold_6G00417340
rosa_rugosa	Rorug03G0058300
rosa_samantha	Rh3AG116400 Rh3BG119900 Rh3CG123100 Rh3DG121800
rosa_wichuraiana	Rw3G009850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	764
AciI	CCGC	3 cut(s)	461, 949, 952
AcoI	YGGCCR	1 cut(s)	708
AcsI	RAATTY	1 cut(s)	354
AcyI	GRCGYC	1 cut(s)	239
AfaI	GTAC	3 cut(s)	119, 175, 775
AfiI	CCNNNNNNNGG	3 cut(s)	447, 764, 883
AgsI	TTSAA	5 cut(s)	366, 583, 852, 1006, 1057
AhlI	ACTAGT	1 cut(s)	194
AjnI	CCWGG	1 cut(s)	858
AluBI	AGCT	6 cut(s)	56, 112, 182, 481, 842, 1097
AluI	AGCT	6 cut(s)	56, 112, 182, 481, 842, 1097
Alw21I	GWGCWC	2 cut(s)	483, 555
Alw26I	GTCTC	9 cut(s)	164, 285, 451, 654, 840, 924, 943, 996, 1002
Ama87I	CYCGRG	2 cut(s)	148, 166
AoxI	GGCC	3 cut(s)	486, 708, 909
ApeKI	GCWGC	1 cut(s)	331
ApoI	RAATTY	1 cut(s)	354
ArsI	GACNNNNNNTTYG	2 cut(s)	632, 664
Asp700I	GAANNNNTTC	1 cut(s)	357
AspS9I	GGNCC	2 cut(s)	486, 567
AsuC2I	CCSGG	3 cut(s)	548, 565, 1050
AsuHPI	GGTGA	3 cut(s)	154, 714, 747
AvaI	CYCGRG	2 cut(s)	148, 166
AvaII	GGWCC	1 cut(s)	567
BanII	GRGCYC	3 cut(s)	483, 565, 878
BbsI	GAAGAC	1 cut(s)	426
Bbv12I	GWGCWC	2 cut(s)	483, 555
BbvCI	CCTCAGC	1 cut(s)	726
BbvI	GCAGC	1 cut(s)	318
BccI	CCATC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	860
BclI	TGATCA	1 cut(s)	828
BcnI	CCSGG	3 cut(s)	548, 565, 1050
BcoDI	GTCTC	9 cut(s)	164, 285, 451, 654, 840, 924, 943, 996, 1002
BcuI	ACTAGT	1 cut(s)	194
BfaI	CTAG	4 cut(s)	99, 177, 195, 981
BfmI	CTRYAG	1 cut(s)	113
BisI	GCNGC	2 cut(s)	332, 950
BlpI	GCTNAGC	1 cut(s)	335
BlsI	GCNGC	2 cut(s)	333, 951
BmcAI	AGTACT	2 cut(s)	175, 775
Bme1390I	CCNGG	4 cut(s)	548, 565, 860, 1050
Bme18I	GGWCC	1 cut(s)	567
BmeT110I	CYCGRG	2 cut(s)	148, 166
BmgT120I	GGNCC	2 cut(s)	486, 567
BmiI	GGNNCC	2 cut(s)	544, 569
BmrFI	CCNGG	4 cut(s)	548, 565, 860, 1050
BmrI	ACTGGG	1 cut(s)	1094
BmsI	GCATC	2 cut(s)	194, 401
BmuI	ACTGGG	1 cut(s)	1094
BpiI	GAAGAC	1 cut(s)	426
BplI	GAGNNNNNCTC	4 cut(s)	144, 176, 235, 267
BpmI	CTGGAG	1 cut(s)	822
Bpu10I	CCTNAGC	2 cut(s)	482, 726
Bpu1102I	GCTNAGC	1 cut(s)	335
BpuMI	CCSGG	3 cut(s)	548, 565, 1050
BsaBI	GATNNNNATC	1 cut(s)	535
BsaHI	GRCGYC	1 cut(s)	239
BsaI	GGTCTC	1 cut(s)	451
BsaJI	CCNNGG	3 cut(s)	242, 546, 665
BsaWI	WCCGGW	1 cut(s)	253
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	3 cut(s)	447, 764, 883
Bse118I	RCCGGY	1 cut(s)	322
Bse1I	ACTGG	1 cut(s)	1089
Bse3DI	GCAATG	1 cut(s)	333
Bse8I	GATNNNNATC	1 cut(s)	535
BseBI	CCWGG	1 cut(s)	860
BseDI	CCNNGG	3 cut(s)	242, 546, 665
BseJI	GATNNNNATC	1 cut(s)	535
BseLI	CCNNNNNNNGG	3 cut(s)	447, 764, 883
BseMI	GCAATG	1 cut(s)	333
BseMII	CTCAG	7 cut(s)	175, 179, 349, 496, 740, 806, 812
BseNI	ACTGG	1 cut(s)	1089
BseRI	GAGGAG	1 cut(s)	582
BseXI	GCAGC	1 cut(s)	318
BseYI	CCCAGC	1 cut(s)	272
BsgI	GTGCAG	1 cut(s)	1043
BshFI	GGCC	3 cut(s)	488, 710, 911
BsiHKAI	GWGCWC	2 cut(s)	483, 555
BsiHKCI	CYCGRG	2 cut(s)	148, 166
BsiSI	CCGG	8 cut(s)	254, 269, 284, 323, 540, 548, 565, 1049
BslFI	GGGAC	3 cut(s)	148, 383, 553
BslI	CCNNNNNNNGG	3 cut(s)	447, 764, 883
BsmAI	GTCTC	9 cut(s)	164, 285, 451, 654, 840, 924, 943, 996, 1002
BsmFI	GGGAC	3 cut(s)	148, 383, 553
BsnI	GGCC	3 cut(s)	488, 710, 911
Bso31I	GGTCTC	1 cut(s)	451
BsoBI	CYCGRG	2 cut(s)	148, 166
Bsp1286I	GDGCHC	4 cut(s)	483, 555, 565, 878
Bsp143I	GATC	3 cut(s)	144, 530, 828
Bsp1720I	GCTNAGC	1 cut(s)	335
Bsp19I	CCATGG	1 cut(s)	665
BspACI	CCGC	3 cut(s)	461, 949, 952
BspANI	GGCC	3 cut(s)	488, 710, 911
BspCNI	CTCAG	7 cut(s)	174, 180, 348, 495, 739, 805, 811
BspLI	GGNNCC	2 cut(s)	544, 569
BspQI	GCTCTTC	1 cut(s)	1001
BspTNI	GGTCTC	1 cut(s)	451
BsrDI	GCAATG	1 cut(s)	333
BsrFI	RCCGGY	1 cut(s)	322
BsrI	ACTGG	1 cut(s)	1089
BssAI	RCCGGY	1 cut(s)	322
BssECI	CCNNGG	3 cut(s)	242, 546, 665
BssMI	GATC	3 cut(s)	144, 530, 828
BssNI	GRCGYC	1 cut(s)	239
BssT1I	CCWWGG	1 cut(s)	665
Bst2UI	CCWGG	1 cut(s)	860
Bst4CI	ACNGT	4 cut(s)	73, 117, 124, 346
Bst6I	CTCTTC	4 cut(s)	596, 1001, 1010, 1022
BstACI	GRCGYC	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	324
BstDSI	CCRYGG	1 cut(s)	665
BstEII	GGTNACC	1 cut(s)	753
BstKTI	GATC	3 cut(s)	147, 533, 831
BstMAI	GTCTC	9 cut(s)	164, 285, 451, 654, 840, 924, 943, 996, 1002
BstMBI	GATC	3 cut(s)	144, 530, 828
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 328
BstNI	CCWGG	1 cut(s)	860
BstPI	GGTNACC	1 cut(s)	753
BstSCI	CCNGG	4 cut(s)	546, 563, 858, 1048
BstSFI	CTRYAG	1 cut(s)	113
BstV1I	GCAGC	1 cut(s)	318
BstV2I	GAAGAC	1 cut(s)	426
BstXI	CCANNNNNNTGG	1 cut(s)	634
BsuRI	GGCC	3 cut(s)	488, 710, 911
BtgI	CCRYGG	1 cut(s)	665
BtsI	GCAGTG	1 cut(s)	317
BtsIMutI	CAGTG	4 cut(s)	78, 129, 317, 1082
Cac8I	GCNNGC	1 cut(s)	324
Cfr10I	RCCGGY	1 cut(s)	322
Cfr13I	GGNCC	2 cut(s)	486, 567
CseI	GACGC	2 cut(s)	247, 1052
Csp6I	GTAC	3 cut(s)	118, 174, 774
CviAII	CATG	1 cut(s)	666
CviQI	GTAC	3 cut(s)	118, 174, 774
DpnI	GATC	3 cut(s)	146, 532, 830
DpnII	GATC	3 cut(s)	144, 530, 828
EaeI	YGGCCR	1 cut(s)	708
Eam1104I	CTCTTC	4 cut(s)	596, 1001, 1010, 1022
EarI	CTCTTC	4 cut(s)	596, 1001, 1010, 1022
Ecl136II	GAGCTC	1 cut(s)	481
Eco130I	CCWWGG	1 cut(s)	665
Eco24I	GRGCYC	3 cut(s)	483, 565, 878
Eco31I	GGTCTC	1 cut(s)	451
Eco47I	GGWCC	1 cut(s)	567
Eco53kI	GAGCTC	1 cut(s)	481
Eco88I	CYCGRG	2 cut(s)	148, 166
Eco91I	GGTNACC	1 cut(s)	753
EcoICRI	GAGCTC	1 cut(s)	481
EcoO65I	GGTNACC	1 cut(s)	753
EcoRII	CCWGG	1 cut(s)	858
EcoT14I	CCWWGG	1 cut(s)	665
EcoT38I	GRGCYC	3 cut(s)	483, 565, 878
ErhI	CCWWGG	1 cut(s)	665
FaeI	CATG	1 cut(s)	669
FaiI	YATR	3 cut(s)	95, 416, 667
FaqI	GGGAC	3 cut(s)	148, 383, 553
FatI	CATG	1 cut(s)	665
FbaI	TGATCA	1 cut(s)	828
Fnu4HI	GCNGC	2 cut(s)	332, 950
FriOI	GRGCYC	3 cut(s)	483, 565, 878
Fsp4HI	GCNGC	2 cut(s)	332, 950
FspBI	CTAG	4 cut(s)	99, 177, 195, 981
GluI	GCNGC	2 cut(s)	332, 950
GsaI	CCCAGC	1 cut(s)	276
GsuI	CTGGAG	1 cut(s)	822
HaeIII	GGCC	3 cut(s)	488, 710, 911
HapII	CCGG	8 cut(s)	254, 269, 284, 323, 540, 548, 565, 1049
HgaI	GACGC	2 cut(s)	247, 1052
Hin1I	GRCGYC	1 cut(s)	239
Hin1II	CATG	1 cut(s)	669
HinfI	GANTC	6 cut(s)	157, 215, 536, 796, 805, 811
HpaII	CCGG	8 cut(s)	254, 269, 284, 323, 540, 548, 565, 1049
HphI	GGTGA	3 cut(s)	154, 714, 747
Hpy166II	GTNNAC	1 cut(s)	120
Hpy188I	TCNGA	7 cut(s)	189, 350, 535, 795, 810, 924, 1101
Hpy188III	TCNNGA	6 cut(s)	150, 570, 826, 865, 940, 969
Hpy8I	GTNNAC	1 cut(s)	120
Hpy99I	CGWCG	1 cut(s)	970
HpyAV	CCTTC	4 cut(s)	73, 133, 493, 1028
HpyCH4III	ACNGT	4 cut(s)	73, 117, 124, 346
HpyCH4V	TGCA	5 cut(s)	106, 207, 221, 377, 1024
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 328
Hsp92I	GRCGYC	1 cut(s)	239
Hsp92II	CATG	1 cut(s)	669
KroI	GCCGGC	1 cut(s)	322
KroNI	GCCGGC	1 cut(s)	324
Ksp22I	TGATCA	1 cut(s)	828
Kzo9I	GATC	3 cut(s)	144, 530, 828
LguI	GCTCTTC	1 cut(s)	1001
LmnI	GCTCC	3 cut(s)	109, 548, 558
Lsp1109I	GCAGC	1 cut(s)	318
LweI	GCATC	2 cut(s)	194, 401
MaeI	CTAG	4 cut(s)	99, 177, 195, 981
MaeIII	GTNAC	3 cut(s)	124, 315, 753
MalI	GATC	3 cut(s)	146, 532, 830
MboI	GATC	3 cut(s)	144, 530, 828
MhlI	GDGCHC	4 cut(s)	483, 555, 565, 878
MluCI	AATT	4 cut(s)	354, 371, 573, 1105
MlyI	GAGTC	3 cut(s)	166, 790, 805
MmeI	TCCRAC	4 cut(s)	328, 549, 580, 1091
MroNI	GCCGGC	1 cut(s)	322
MroXI	GAANNNNTTC	1 cut(s)	357
MseI	TTAA	4 cut(s)	228, 576, 870, 1108
MspI	CCGG	8 cut(s)	254, 269, 284, 323, 540, 548, 565, 1049
MspR9I	CCNGG	4 cut(s)	548, 565, 860, 1050
MvaI	CCWGG	1 cut(s)	860
MwoI	GCNNNNNNNGC	2 cut(s)	293, 328
NaeI	GCCGGC	1 cut(s)	324
NciI	CCSGG	3 cut(s)	548, 565, 1050
NcoI	CCATGG	1 cut(s)	665
NdeII	GATC	3 cut(s)	144, 530, 828
NgoMIV	GCCGGC	1 cut(s)	322
NlaIII	CATG	1 cut(s)	669
NlaIV	GGNNCC	2 cut(s)	544, 569
NmeAIII	GCCGAG	1 cut(s)	267
NmuCI	GTSAC	3 cut(s)	124, 315, 753
PciSI	GCTCTTC	1 cut(s)	1001
PdiI	GCCGGC	1 cut(s)	324
PdmI	GAANNNNTTC	1 cut(s)	357
PfeI	GAWTC	3 cut(s)	215, 536, 805
PflMI	CCANNNNNTGG	1 cut(s)	764
PkrI	GCNGC	2 cut(s)	333, 951
PleI	GAGTC	3 cut(s)	165, 790, 805
PpsI	GAGTC	3 cut(s)	165, 790, 805
Psp124BI	GAGCTC	1 cut(s)	483
Psp6I	CCWGG	1 cut(s)	858
PspEI	GGTNACC	1 cut(s)	753
PspFI	CCCAGC	1 cut(s)	272
PspGI	CCWGG	1 cut(s)	858
PspN4I	GGNNCC	2 cut(s)	544, 569
PspPI	GGNCC	2 cut(s)	486, 567
PsrI	GAACNNNNNNTAC	2 cut(s)	614, 646
RsaI	GTAC	3 cut(s)	119, 175, 775
RsaNI	GTAC	3 cut(s)	118, 174, 774
SacI	GAGCTC	1 cut(s)	483
SapI	GCTCTTC	1 cut(s)	1001
SaqAI	TTAA	4 cut(s)	228, 576, 870, 1108
SatI	GCNGC	2 cut(s)	332, 950
Sau3AI	GATC	3 cut(s)	144, 530, 828
Sau96I	GGNCC	2 cut(s)	486, 567
ScaI	AGTACT	2 cut(s)	175, 775
SchI	GAGTC	3 cut(s)	166, 790, 805
ScrFI	CCNGG	4 cut(s)	548, 565, 860, 1050
SduI	GDGCHC	4 cut(s)	483, 555, 565, 878
SfaNI	GCATC	2 cut(s)	194, 401
SfcI	CTRYAG	1 cut(s)	113
SinI	GGWCC	1 cut(s)	567
SpeI	ACTAGT	1 cut(s)	194
Sse9I	AATT	4 cut(s)	354, 371, 573, 1105
SsiI	CCGC	3 cut(s)	461, 949, 952
SspMI	CTAG	4 cut(s)	99, 177, 195, 981
SstI	GAGCTC	1 cut(s)	483
StyD4I	CCNGG	4 cut(s)	546, 563, 858, 1048
StyI	CCWWGG	1 cut(s)	665
TaaI	ACNGT	4 cut(s)	73, 117, 124, 346
TaqI	TCGA	2 cut(s)	941, 968
TasI	AATT	4 cut(s)	354, 371, 573, 1105
TatI	WGTACW	3 cut(s)	117, 173, 773
TauI	GCSGC	1 cut(s)	952
TfiI	GAWTC	3 cut(s)	215, 536, 805
Tru1I	TTAA	4 cut(s)	228, 576, 870, 1108
Tru9I	TTAA	4 cut(s)	228, 576, 870, 1108
TscAI	CASTG	4 cut(s)	78, 129, 324, 1089
TseFI	GTSAC	3 cut(s)	124, 315, 753
TseI	GCWGC	1 cut(s)	331
Tsp45I	GTSAC	3 cut(s)	124, 315, 753
TspDTI	ATGAA	1 cut(s)	350
TspGWI	ACGGA	1 cut(s)	954
TspRI	CASTG	4 cut(s)	78, 129, 324, 1089
Van91I	CCANNNNNTGG	1 cut(s)	764
VpaK11BI	GGWCC	1 cut(s)	567
XapI	RAATTY	1 cut(s)	354
XmnI	GAANNNNTTC	1 cut(s)	357
XspI	CTAG	4 cut(s)	99, 177, 195, 981
ZrmI	AGTACT	2 cut(s)	175, 775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.