Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010287

Physical Location & Seq

Genomic Coordinates Reverse (-)

6663875 .. 6668781

Gene Structure 4907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g11190.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGCGTCCGTACTCAATACGATGTCGTCCGTCAGATTCTCAAACCCTAACCCCAACCGACTCCGACCTCACTCCGTTTTGGCGCCGGTTTCCGTTTCTTTTCCCAGACGGAGATTTACGGTCAGGGCTGCCGAGACTGATACGGATGAAGGAGTTAAATCTGAGGCACCGGATAAGGCCCCAGCTAGTGGCGGTTCCAGCTTTAATCAGCTTCTCGGAATCAAAGGAGCTTCTCAGGAAACTAATAAATGGAAGATCCGTCTTCAGCTGACCAAGCCTGTCACTTGGCCTCCATTGGTATGGGGAGTAATTTGCGGAGCTGCTGCCTCTGGAAATTTTCACTGGACTTTGGAGGATATTGCCAAATCTATACTTTGTATGGCTATGTCTGGCCCTTTTCTCACTGGCTACACACAGACACTAAATGATTGGTATGACCGAGATATTGATGCAATCAATGAACCTTATCGTCCGATTCCCTCTGGGGCAATATCTGAAAATGAGGTTATTACTCAAATCTGGGTACTGCTTTTAGGAGGTCTTGTCTCAGCTGGTATATTAGATGTGTGGGCAGGACATGATTTCCCAACAGTCTTTTACCTTGCTCTGGGTGGATCCTTTGTATCGTACATCTACTCTGCTCCCCCTCTAAAGCTTAAACAAAATGGATGGATTGGAAATTTTGCTCTTGGAGCAAGTTATATCGGTTTGCCATGGTGGGCCGGTCAGGCATTATTTGGAACCCTTACACCGGATATAGTTGTCCTCACACTTTTGTACAGCATAGCTGGATTGGGAATCGCTATTGTAAATGACTTCAAAAGTGTTGAAGGAGATAGAGCATTGGGACTTCAGTCACTTCCTGTAGCTTTTGGTCCTGAAACTGCAAAATGGATTTGCGTGGGTGCCATCGATATAACTCAATTGTCAGTTGCTGGTTATCTGCTAGGAGCTGGTAAACCATACTACGCTTTAGCTCTAGTTGCTTTGATAGCTCCCCAAGTCTTTTTTCAGTTCAAGTATTTTCTCAAAGATCCTGTCAAGTATGATGTTAAATATCAGGCTAGCGCGCAGCCATTTCTTGTACTTGGTATTCTGGTAACAGCTCTAGCAACGAGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

UbiA

Protein Analysis

375

Amino Acids

40.43

Weight (kDa)

7.66

Isoelectric Point (pI)

27.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UbiA	PF01040	97 - 339	1.9e-38	UbiA prenyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51820
fragaria_vesca	FvH4_6g11190 FvH4_6g11190 FvH4_6g11190
malus_domestica	MD00G1061800.v1.1 MD12G1171900.v1.1
prunus_persica	Prupe.6G280100_v2.0.a1 Prupe.6G280100_v2.0.a1
pyrus_communis	pycom04g14270 pycom12g16310
rosa_chinensis	RchiOBHm_Chr3g0462631
rosa_laevigata	RLG00000024844
rosa_multiflora	Rmu_co8521225.1_g000001 Rmu_sc0002882.1_g000008
rosa_roxburghii	Rroxscaffold_6G00417340
rosa_rugosa	Rorug03G0058300
rosa_samantha	Rh3AG116400 Rh3BG119900 Rh3CG123100 Rh3DG121800
rosa_wichuraiana	Rw3G009850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	82, 166, 905
AccB7I	CCANNNNNTGG	1 cut(s)	188
AccII	CGCG	1 cut(s)	1070
AciI	CCGC	2 cut(s)	192, 315
AclWI	GGATC	4 cut(s)	250, 609, 622, 1028
AcsI	RAATTY	2 cut(s)	334, 679
AcuI	CTGAAG	2 cut(s)	248, 836
AcyI	GRCGYC	2 cut(s)	5, 83
AfaI	GTAC	5 cut(s)	12, 525, 629, 779, 1086
AfiI	CCNNNNNNNGG	3 cut(s)	188, 607, 751
AgsI	TTSAA	3 cut(s)	820, 830, 1018
AjuI	GAANNNNNNNTTGG	2 cut(s)	993, 1025
Alw26I	GTCTC	2 cut(s)	128, 550
AlwI	GGATC	4 cut(s)	250, 609, 622, 1028
AlwNI	CAGNNNCTG	1 cut(s)	935
AoxI	GGCC	4 cut(s)	177, 287, 391, 720
ApeKI	GCWGC	4 cut(s)	128, 320, 323, 1072
ApoI	RAATTY	2 cut(s)	334, 679
ArsI	GACNNNNNNTTYG	2 cut(s)	1023, 1055
AspLEI	GCGC	3 cut(s)	85, 1070, 1072
AspS9I	GGNCC	4 cut(s)	178, 392, 720, 875
AsuNHI	GCTAGC	1 cut(s)	1064
AvaII	GGWCC	1 cut(s)	875
BamHI	GGATCC	1 cut(s)	614
BanI	GGYRCC	3 cut(s)	82, 166, 905
BbsI	GAAGAC	1 cut(s)	254
BbvI	GCAGC	4 cut(s)	115, 307, 310, 1084
BccI	CCATC	2 cut(s)	663, 917
BcoDI	GTCTC	2 cut(s)	128, 550
BfaI	CTAG	5 cut(s)	186, 947, 980, 1065, 1109
BfmI	CTRYAG	1 cut(s)	864
BfoI	RGCGCY	1 cut(s)	86
BglI	GCCNNNNNGGC	1 cut(s)	728
BisI	GCNGC	4 cut(s)	129, 321, 324, 1073
BlsI	GCNGC	4 cut(s)	130, 322, 325, 1074
Bme18I	GGWCC	1 cut(s)	875
BmgT120I	GGNCC	4 cut(s)	178, 392, 720, 875
BmiI	GGNNCC	7 cut(s)	84, 168, 180, 196, 616, 742, 907
BmsI	GCATC	1 cut(s)	439
BmtI	GCTAGC	1 cut(s)	1068
BoxI	GACNNNNGTC	1 cut(s)	853
BpiI	GAAGAC	1 cut(s)	254
Bsa29I	ATCGAT	1 cut(s)	912
BsaHI	GRCGYC	2 cut(s)	5, 83
BsaJI	CCNNGG	1 cut(s)	713
BsaWI	WCCGGW	2 cut(s)	169, 751
BsaXI	ACNNNNNCTCC	4 cut(s)	274, 304, 528, 558
Bsc4I	CCNNNNNNNGG	3 cut(s)	188, 607, 751
Bse118I	RCCGGY	2 cut(s)	85, 722
Bse1I	ACTGG	2 cut(s)	347, 409
BseCI	ATCGAT	1 cut(s)	912
BseDI	CCNNGG	1 cut(s)	713
BseGI	GGATG	2 cut(s)	151, 674
BseLI	CCNNNNNNNGG	3 cut(s)	188, 607, 751
BseMII	CTCAG	3 cut(s)	153, 248, 561
BseNI	ACTGG	2 cut(s)	347, 409
BsePI	GCGCGC	1 cut(s)	1068
BseXI	GCAGC	4 cut(s)	115, 307, 310, 1084
BseYI	CCCAGC	1 cut(s)	181
Bsh1236I	CGCG	1 cut(s)	1070
BshFI	GGCC	4 cut(s)	179, 289, 393, 722
BshNI	GGYRCC	3 cut(s)	82, 166, 905
BshVI	ATCGAT	1 cut(s)	912
BsiSI	CCGG	4 cut(s)	86, 170, 723, 752
BslFI	GGGAC	1 cut(s)	861
BslI	CCNNNNNNNGG	3 cut(s)	188, 607, 751
BsmAI	GTCTC	2 cut(s)	128, 550
BsmFI	GGGAC	1 cut(s)	861
BsnI	GGCC	4 cut(s)	179, 289, 393, 722
Bsp1407I	TGTACA	1 cut(s)	777
Bsp143I	GATC	3 cut(s)	255, 614, 1033
Bsp19I	CCATGG	1 cut(s)	713
BspACI	CCGC	2 cut(s)	192, 315
BspANI	GGCC	4 cut(s)	179, 289, 393, 722
BspCNI	CTCAG	3 cut(s)	154, 247, 560
BspDI	ATCGAT	1 cut(s)	912
BspFNI	CGCG	1 cut(s)	1070
BspLI	GGNNCC	7 cut(s)	84, 168, 180, 196, 616, 742, 907
BspOI	GCTAGC	1 cut(s)	1068
BspPI	GGATC	4 cut(s)	250, 609, 622, 1028
BspT107I	GGYRCC	3 cut(s)	82, 166, 905
BsrFI	RCCGGY	2 cut(s)	85, 722
BsrGI	TGTACA	1 cut(s)	777
BsrI	ACTGG	2 cut(s)	347, 409
BssAI	RCCGGY	2 cut(s)	85, 722
BssECI	CCNNGG	1 cut(s)	713
BssHII	GCGCGC	1 cut(s)	1068
BssMI	GATC	3 cut(s)	255, 614, 1033
BssNI	GRCGYC	2 cut(s)	5, 83
BssT1I	CCWWGG	1 cut(s)	713
Bst4CI	ACNGT	2 cut(s)	121, 592
BstACI	GRCGYC	2 cut(s)	5, 83
BstAUI	TGTACA	1 cut(s)	777
BstC8I	GCNNGC	2 cut(s)	1066, 1070
BstDEI	CTNAG	3 cut(s)	162, 234, 547
BstDSI	CCRYGG	1 cut(s)	713
BstF5I	GGATG	2 cut(s)	151, 674
BstFNI	CGCG	1 cut(s)	1070
BstH2I	RGCGCY	1 cut(s)	86
BstHHI	GCGC	3 cut(s)	85, 1070, 1072
BstKTI	GATC	3 cut(s)	258, 617, 1036
BstMAI	GTCTC	2 cut(s)	128, 550
BstMBI	GATC	3 cut(s)	255, 614, 1033
BstMWI	GCNNNNNNNGC	6 cut(s)	198, 274, 692, 728, 983, 992
BstPAI	GACNNNNGTC	1 cut(s)	853
BstSFI	CTRYAG	1 cut(s)	864
BstUI	CGCG	1 cut(s)	1070
BstV1I	GCAGC	4 cut(s)	115, 307, 310, 1084
BstV2I	GAAGAC	1 cut(s)	254
BstX2I	RGATCY	3 cut(s)	255, 614, 1033
BstXI	CCANNNNNNTGG	1 cut(s)	300
BstYI	RGATCY	3 cut(s)	255, 614, 1033
Bsu15I	ATCGAT	1 cut(s)	912
BsuRI	GGCC	4 cut(s)	179, 289, 393, 722
BsuTUI	ATCGAT	1 cut(s)	912
BtgI	CCRYGG	1 cut(s)	713
BtsCI	GGATG	2 cut(s)	151, 674
BtsIMutI	CAGTG	2 cut(s)	340, 402
Cac8I	GCNNGC	2 cut(s)	1066, 1070
CaiI	CAGNNNCTG	1 cut(s)	935
CfoI	GCGC	3 cut(s)	85, 1070, 1072
Cfr10I	RCCGGY	2 cut(s)	85, 722
Cfr13I	GGNCC	4 cut(s)	178, 392, 720, 875
ClaI	ATCGAT	1 cut(s)	912
Csp6I	GTAC	5 cut(s)	11, 524, 628, 778, 1085
CviAII	CATG	2 cut(s)	578, 714
CviQI	GTAC	5 cut(s)	11, 524, 628, 778, 1085
DdeI	CTNAG	3 cut(s)	162, 234, 547
DinI	GGCGCC	1 cut(s)	84
DpnI	GATC	3 cut(s)	257, 616, 1035
DpnII	GATC	3 cut(s)	255, 614, 1033
Eco130I	CCWWGG	1 cut(s)	713
Eco47I	GGWCC	1 cut(s)	875
Eco57I	CTGAAG	2 cut(s)	248, 836
EcoO109I	RGGNCCY	1 cut(s)	178
EcoT14I	CCWWGG	1 cut(s)	713
EgeI	GGCGCC	1 cut(s)	84
EheI	GGCGCC	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	713
FaeI	CATG	2 cut(s)	581, 717
FaqI	GGGAC	1 cut(s)	861
FatI	CATG	2 cut(s)	577, 713
Fnu4HI	GCNGC	4 cut(s)	129, 321, 324, 1073
FokI	GGATG	2 cut(s)	158, 681
Fsp4HI	GCNGC	4 cut(s)	129, 321, 324, 1073
FspBI	CTAG	5 cut(s)	186, 947, 980, 1065, 1109
GlaI	GCGC	3 cut(s)	84, 1069, 1071
GluI	GCNGC	4 cut(s)	129, 321, 324, 1073
GsaI	CCCAGC	1 cut(s)	185
HaeII	RGCGCY	1 cut(s)	86
HaeIII	GGCC	4 cut(s)	179, 289, 393, 722
HapII	CCGG	4 cut(s)	86, 170, 723, 752
HhaI	GCGC	3 cut(s)	85, 1070, 1072
Hin1I	GRCGYC	2 cut(s)	5, 83
Hin1II	CATG	2 cut(s)	581, 717
Hin6I	GCGC	3 cut(s)	83, 1068, 1070
HinP1I	GCGC	3 cut(s)	83, 1068, 1070
HindIII	AAGCTT	1 cut(s)	653
HinfI	GANTC	6 cut(s)	36, 60, 219, 475, 798, 1117
HpaII	CCGG	4 cut(s)	86, 170, 723, 752
Hpy166II	GTNNAC	1 cut(s)	959
Hpy188I	TCNGA	6 cut(s)	35, 65, 163, 218, 474, 496
Hpy188III	TCNNGA	3 cut(s)	236, 330, 878
Hpy8I	GTNNAC	1 cut(s)	959
HpyAV	CCTTC	2 cut(s)	143, 824
HpyCH4III	ACNGT	2 cut(s)	121, 592
HpyCH4V	TGCA	2 cut(s)	452, 887
HpyF10VI	GCNNNNNNNGC	6 cut(s)	198, 274, 692, 728, 983, 992
HpyF3I	CTNAG	3 cut(s)	162, 234, 547
Hsp92I	GRCGYC	2 cut(s)	5, 83
Hsp92II	CATG	2 cut(s)	581, 717
HspAI	GCGC	3 cut(s)	83, 1068, 1070
KasI	GGCGCC	1 cut(s)	82
Kzo9I	GATC	3 cut(s)	255, 614, 1033
LmnI	GCTCC	6 cut(s)	227, 317, 646, 692, 950, 1000
Lsp1109I	GCAGC	4 cut(s)	115, 307, 310, 1084
LweI	GCATC	1 cut(s)	439
MaeI	CTAG	5 cut(s)	186, 947, 980, 1065, 1109
MaeIII	GTNAC	3 cut(s)	280, 855, 1099
MalI	GATC	3 cut(s)	257, 616, 1035
MboI	GATC	3 cut(s)	255, 614, 1033
MboII	GAAGA	2 cut(s)	254, 265
MfeI	CAATTG	1 cut(s)	923
MflI	RGATCY	3 cut(s)	255, 614, 1033
MluCI	AATT	4 cut(s)	309, 334, 679, 923
Mly113I	GGCGCC	1 cut(s)	83
MlyI	GAGTC	1 cut(s)	54
MmeI	TCCRAC	1 cut(s)	88
MseI	TTAA	4 cut(s)	156, 204, 657, 1053
MslI	CAYNNNNRTG	1 cut(s)	298
MspA1I	CMGCKG	2 cut(s)	268, 551
MspI	CCGG	4 cut(s)	86, 170, 723, 752
MunI	CAATTG	1 cut(s)	923
MvnI	CGCG	1 cut(s)	1070
MwoI	GCNNNNNNNGC	6 cut(s)	198, 274, 692, 728, 983, 992
NarI	GGCGCC	1 cut(s)	83
NcoI	CCATGG	1 cut(s)	713
NdeII	GATC	3 cut(s)	255, 614, 1033
NheI	GCTAGC	1 cut(s)	1064
NlaIII	CATG	2 cut(s)	581, 717
NlaIV	GGNNCC	7 cut(s)	84, 168, 180, 196, 616, 742, 907
NmeAIII	GCCGAG	1 cut(s)	157
NmuCI	GTSAC	2 cut(s)	280, 855
PauI	GCGCGC	1 cut(s)	1068
PfeI	GAWTC	4 cut(s)	36, 219, 475, 798
PflMI	CCANNNNNTGG	1 cut(s)	188
PkrI	GCNGC	4 cut(s)	130, 322, 325, 1074
PleI	GAGTC	1 cut(s)	54
PluTI	GGCGCC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	54
PshAI	GACNNNNGTC	1 cut(s)	853
PspFI	CCCAGC	1 cut(s)	181
PspN4I	GGNNCC	7 cut(s)	84, 168, 180, 196, 616, 742, 907
PspPI	GGNCC	4 cut(s)	178, 392, 720, 875
PstNI	CAGNNNCTG	1 cut(s)	935
PsuI	RGATCY	3 cut(s)	255, 614, 1033
PteI	GCGCGC	1 cut(s)	1068
PvuII	CAGCTG	2 cut(s)	268, 551
RsaI	GTAC	5 cut(s)	12, 525, 629, 779, 1086
RsaNI	GTAC	5 cut(s)	11, 524, 628, 778, 1085
RseI	CAYNNNNRTG	1 cut(s)	298
SaqAI	TTAA	4 cut(s)	156, 204, 657, 1053
SatI	GCNGC	4 cut(s)	129, 321, 324, 1073
Sau3AI	GATC	3 cut(s)	255, 614, 1033
Sau96I	GGNCC	4 cut(s)	178, 392, 720, 875
SchI	GAGTC	1 cut(s)	54
SfaNI	GCATC	1 cut(s)	439
SfcI	CTRYAG	1 cut(s)	864
SfoI	GGCGCC	1 cut(s)	84
SinI	GGWCC	1 cut(s)	875
SmiMI	CAYNNNNRTG	1 cut(s)	298
Sse9I	AATT	4 cut(s)	309, 334, 679, 923
SsiI	CCGC	2 cut(s)	192, 315
SspDI	GGCGCC	1 cut(s)	82
SspMI	CTAG	5 cut(s)	186, 947, 980, 1065, 1109
StyI	CCWWGG	1 cut(s)	713
TaaI	ACNGT	2 cut(s)	121, 592
TaqI	TCGA	1 cut(s)	912
TaqII	GACCGA	1 cut(s)	453
TasI	AATT	4 cut(s)	309, 334, 679, 923
TatI	WGTACW	2 cut(s)	777, 1084
TfiI	GAWTC	4 cut(s)	36, 219, 475, 798
Tru1I	TTAA	4 cut(s)	156, 204, 657, 1053
Tru9I	TTAA	4 cut(s)	156, 204, 657, 1053
TscAI	CASTG	2 cut(s)	347, 409
TseFI	GTSAC	2 cut(s)	280, 855
TseI	GCWGC	4 cut(s)	128, 320, 323, 1072
Tsp45I	GTSAC	2 cut(s)	280, 855
TspDTI	ATGAA	2 cut(s)	162, 474
TspGWI	ACGGA	6 cut(s)	19, 64, 82, 124, 158, 248
TspRI	CASTG	2 cut(s)	347, 409
Van91I	CCANNNNNTGG	1 cut(s)	188
VpaK11BI	GGWCC	1 cut(s)	875
XapI	RAATTY	2 cut(s)	334, 679
XspI	CTAG	5 cut(s)	186, 947, 980, 1065, 1109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.