Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8521225.1

Orthogroup ID

OG0010287

Physical Location & Seq

Genomic Coordinates Forward (+)

106 .. 4382

Gene Structure 4277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8521225.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

atggcgtccgtactcaatacggtgccttccgctagattttcgaaccctaacgccagccgagttcgtactcactccgttttggcgccgatttccgtttcgttttccaggaggagatttacagttagggctgcagagactgatacgaatgaagaaatcaaatctcaggcggcaccggataaggcaccggcgagcggtggttcgagctttaatcagcttcttggaatcaaaggagcttctcaagaaactaataaatggaagattcgtcttcagctgaccaagcctgttacttggcctcctttggtatggggagtagtttgcggagctgctgcctccggaaattttcattggaatttggaggatgttgccaaatctatactttgtatgtcaatgtctggcccttttctcactggctacacacagacactaaatgattggtatgaccgagagattgatgcaatcaatgagccatatcgtccaattccctcgggggcaatatctgagaatgaggttattactcaaatctgggtactgcttttaggaggtcttgtctcggctggtatattggatgtgtgggcaggacatgatttcccaatagtcttttaccttgctctgggtggatccttgctatcgtacatttactctgctccacctctaaagcttaaacaaaatggatggattggaaattttgcgcttggagcaagttatatctctttgccatggtgggctggtcaggcattatttggaacccttacacctgacataattgtcctcacactcctgtacagcattgccggattggggattgctattgtaaatgacttcaaaagtgttgaaggagatagagcactgggacttcagtcacttcccgtagcttttggttctgaaactgcaaaatggatttgcgtgggtgccatcgacataactcagctatcgattgctggttatctgctaggggctggtaaaccatactatgcattaactctagttgctttgatagctccccaagtctttttccagttcaagtattttctcaaagaccctgtcaagtatgatgttaaatatcaggccagtgcgcagccatttcttgttcttggtcttctggtaacagctttagcaaccagtcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

UbiA

Protein Analysis

375

Amino Acids

40.56

Weight (kDa)

8.29

Isoelectric Point (pI)

28.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51820
fragaria_vesca	FvH4_6g11190 FvH4_6g11190 FvH4_6g11190
malus_domestica	MD00G1061800.v1.1 MD12G1171900.v1.1
prunus_persica	Prupe.6G280100_v2.0.a1 Prupe.6G280100_v2.0.a1
pyrus_communis	pycom04g14270 pycom12g16310
rosa_chinensis	RchiOBHm_Chr3g0462631
rosa_laevigata	RLG00000024844
rosa_multiflora	Rmu_co8521225.1_g000001 Rmu_sc0002882.1_g000008
rosa_roxburghii	Rroxscaffold_6G00417340
rosa_rugosa	Rorug03G0058300
rosa_samantha	Rh3AG116400 Rh3BG119900 Rh3CG123100 Rh3DG121800
rosa_wichuraiana	Rw3G009850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	764
Acc16I	TGCGCA	1 cut(s)	1074
AccB1I	GGYRCC	5 cut(s)	22, 82, 169, 181, 908
AccBSI	CCGCTC	1 cut(s)	192
AccIII	TCCGGA	1 cut(s)	332
AciI	CCGC	4 cut(s)	30, 167, 192, 318
AclWI	GGATC	2 cut(s)	612, 625
AcsI	RAATTY	3 cut(s)	337, 349, 682
AcuI	CTGAAG	2 cut(s)	251, 839
AcyI	GRCGYC	2 cut(s)	5, 83
AfaI	GTAC	5 cut(s)	12, 67, 528, 632, 782
AfiI	CCNNNNNNNGG	3 cut(s)	191, 610, 798
AgsI	TTSAA	3 cut(s)	823, 833, 1021
AjnI	CCWGG	1 cut(s)	104
AjuI	GAANNNNNNNTTGG	2 cut(s)	328, 360
Alw21I	GWGCWC	1 cut(s)	847
Alw26I	GTCTC	2 cut(s)	128, 553
AlwI	GGATC	2 cut(s)	612, 625
AlwNI	CAGNNNCTG	1 cut(s)	137
Ama87I	CYCGRG	1 cut(s)	484
Aor13HI	TCCGGA	1 cut(s)	332
AoxI	GGCC	3 cut(s)	290, 394, 1065
ApeKI	GCWGC	4 cut(s)	128, 323, 326, 1075
ApoI	RAATTY	3 cut(s)	337, 349, 682
ArsI	GACNNNNNNTTYG	2 cut(s)	1026, 1058
AspLEI	GCGC	3 cut(s)	85, 691, 1075
AspS9I	GGNCC	1 cut(s)	395
AsuII	TTCGAA	1 cut(s)	41
AvaI	CYCGRG	1 cut(s)	484
BamHI	GGATCC	1 cut(s)	617
BanI	GGYRCC	5 cut(s)	22, 82, 169, 181, 908
BbsI	GAAGAC	2 cut(s)	257, 1088
Bbv12I	GWGCWC	1 cut(s)	847
BbvI	GCAGC	4 cut(s)	115, 310, 313, 1087
BccI	CCATC	2 cut(s)	666, 920
BciT130I	CCWGG	1 cut(s)	106
BcoDI	GTCTC	2 cut(s)	128, 553
BfaI	CTAG	3 cut(s)	33, 950, 983
BfmI	CTRYAG	1 cut(s)	129
BfoI	RGCGCY	1 cut(s)	86
BisI	GCNGC	5 cut(s)	129, 168, 324, 327, 1076
BlsI	GCNGC	5 cut(s)	130, 169, 325, 328, 1077
Bme1390I	CCNGG	1 cut(s)	106
BmeT110I	CYCGRG	1 cut(s)	484
BmgT120I	GGNCC	1 cut(s)	395
BmiI	GGNNCC	7 cut(s)	24, 84, 171, 183, 619, 745, 910
BmrFI	CCNGG	1 cut(s)	106
BmrI	ACTGGG	1 cut(s)	857
BmsI	GCATC	1 cut(s)	442
BmuI	ACTGGG	1 cut(s)	857
BoxI	GACNNNNGTC	1 cut(s)	856
BpiI	GAAGAC	2 cut(s)	257, 1088
Bpu14I	TTCGAA	1 cut(s)	41
BpuEI	CTTGAG	1 cut(s)	222
Bsa29I	ATCGAT	1 cut(s)	932
BsaHI	GRCGYC	2 cut(s)	5, 83
BsaJI	CCNNGG	2 cut(s)	483, 716
BsaWI	WCCGGW	2 cut(s)	172, 332
BsaXI	ACNNNNNCTCC	4 cut(s)	277, 307, 531, 561
Bsc4I	CCNNNNNNNGG	3 cut(s)	191, 610, 798
Bse118I	RCCGGY	1 cut(s)	184
Bse1I	ACTGG	5 cut(s)	412, 852, 1015, 1068, 1119
Bse3DI	GCAATG	1 cut(s)	786
BseAI	TCCGGA	1 cut(s)	332
BseBI	CCWGG	1 cut(s)	106
BseCI	ATCGAT	1 cut(s)	932
BseDI	CCNNGG	2 cut(s)	483, 716
BseGI	GGATG	3 cut(s)	364, 571, 677
BseLI	CCNNNNNNNGG	3 cut(s)	191, 610, 798
BseMI	GCAATG	1 cut(s)	786
BseMII	CTCAG	3 cut(s)	176, 489, 938
BseNI	ACTGG	5 cut(s)	412, 852, 1015, 1068, 1119
BseRI	GAGGAG	1 cut(s)	124
BseXI	GCAGC	4 cut(s)	115, 310, 313, 1087
BshFI	GGCC	3 cut(s)	292, 396, 1067
BshNI	GGYRCC	5 cut(s)	22, 82, 169, 181, 908
BshVI	ATCGAT	1 cut(s)	932
BsiHKAI	GWGCWC	1 cut(s)	847
BsiHKCI	CYCGRG	1 cut(s)	484
BsiSI	CCGG	4 cut(s)	173, 185, 333, 792
BslFI	GGGAC	1 cut(s)	864
BslI	CCNNNNNNNGG	3 cut(s)	191, 610, 798
BsmAI	GTCTC	2 cut(s)	128, 553
BsmFI	GGGAC	1 cut(s)	864
BsnI	GGCC	3 cut(s)	292, 396, 1067
BsoBI	CYCGRG	1 cut(s)	484
Bsp119I	TTCGAA	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	847
Bsp13I	TCCGGA	1 cut(s)	332
Bsp1407I	TGTACA	1 cut(s)	780
Bsp143I	GATC	1 cut(s)	617
Bsp19I	CCATGG	1 cut(s)	716
BspACI	CCGC	4 cut(s)	30, 167, 192, 318
BspANI	GGCC	3 cut(s)	292, 396, 1067
BspCNI	CTCAG	3 cut(s)	175, 490, 937
BspDI	ATCGAT	1 cut(s)	932
BspEI	TCCGGA	1 cut(s)	332
BspLI	GGNNCC	7 cut(s)	24, 84, 171, 183, 619, 745, 910
BspMAI	CTGCAG	1 cut(s)	133
BspPI	GGATC	2 cut(s)	612, 625
BspT104I	TTCGAA	1 cut(s)	41
BspT107I	GGYRCC	5 cut(s)	22, 82, 169, 181, 908
BsrBI	CCGCTC	1 cut(s)	192
BsrDI	GCAATG	1 cut(s)	786
BsrFI	RCCGGY	1 cut(s)	184
BsrGI	TGTACA	1 cut(s)	780
BsrI	ACTGG	5 cut(s)	412, 852, 1015, 1068, 1119
BssAI	RCCGGY	1 cut(s)	184
BssECI	CCNNGG	2 cut(s)	483, 716
BssMI	GATC	1 cut(s)	617
BssNI	GRCGYC	2 cut(s)	5, 83
BssT1I	CCWWGG	1 cut(s)	716
Bst2UI	CCWGG	1 cut(s)	106
Bst4CI	ACNGT	2 cut(s)	22, 121
BstACI	GRCGYC	2 cut(s)	5, 83
BstAUI	TGTACA	1 cut(s)	780
BstBI	TTCGAA	1 cut(s)	41
BstC8I	GCNNGC	2 cut(s)	55, 190
BstDEI	CTNAG	3 cut(s)	162, 498, 924
BstDSI	CCRYGG	1 cut(s)	716
BstF5I	GGATG	3 cut(s)	364, 571, 677
BstH2I	RGCGCY	1 cut(s)	86
BstHHI	GCGC	3 cut(s)	85, 691, 1075
BstKTI	GATC	1 cut(s)	620
BstMAI	GTCTC	2 cut(s)	128, 553
BstMBI	GATC	1 cut(s)	617
BstMWI	GCNNNNNNNGC	4 cut(s)	277, 695, 731, 995
BstNI	CCWGG	1 cut(s)	106
BstPAI	GACNNNNGTC	1 cut(s)	856
BstSCI	CCNGG	1 cut(s)	104
BstSFI	CTRYAG	1 cut(s)	129
BstV1I	GCAGC	4 cut(s)	115, 310, 313, 1087
BstV2I	GAAGAC	2 cut(s)	257, 1088
BstX2I	RGATCY	1 cut(s)	617
BstYI	RGATCY	1 cut(s)	617
Bsu15I	ATCGAT	1 cut(s)	932
BsuRI	GGCC	3 cut(s)	292, 396, 1067
BsuTUI	ATCGAT	1 cut(s)	932
BtgI	CCRYGG	1 cut(s)	716
BtsCI	GGATG	3 cut(s)	364, 571, 677
BtsIMutI	CAGTG	3 cut(s)	405, 845, 1075
Cac8I	GCNNGC	2 cut(s)	55, 190
CaiI	CAGNNNCTG	1 cut(s)	137
CfoI	GCGC	3 cut(s)	85, 691, 1075
Cfr10I	RCCGGY	1 cut(s)	184
Cfr13I	GGNCC	1 cut(s)	395
ClaI	ATCGAT	1 cut(s)	932
Csp6I	GTAC	5 cut(s)	11, 66, 527, 631, 781
CviAII	CATG	2 cut(s)	581, 717
CviQI	GTAC	5 cut(s)	11, 66, 527, 631, 781
DdeI	CTNAG	3 cut(s)	162, 498, 924
DinI	GGCGCC	1 cut(s)	84
DpnI	GATC	1 cut(s)	619
DpnII	GATC	1 cut(s)	617
DrdI	GACNNNNNNGTC	1 cut(s)	764
DseDI	GACNNNNNNGTC	1 cut(s)	764
Eco130I	CCWWGG	1 cut(s)	716
Eco57I	CTGAAG	2 cut(s)	251, 839
Eco88I	CYCGRG	1 cut(s)	484
EcoRII	CCWGG	1 cut(s)	104
EcoT14I	CCWWGG	1 cut(s)	716
EcoT22I	ATGCAT	1 cut(s)	976
EgeI	GGCGCC	1 cut(s)	84
EheI	GGCGCC	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	716
FaeI	CATG	2 cut(s)	584, 720
FaqI	GGGAC	1 cut(s)	864
FatI	CATG	2 cut(s)	580, 716
Fnu4HI	GCNGC	5 cut(s)	129, 168, 324, 327, 1076
FokI	GGATG	3 cut(s)	371, 578, 684
Fsp4HI	GCNGC	5 cut(s)	129, 168, 324, 327, 1076
FspBI	CTAG	3 cut(s)	33, 950, 983
FspI	TGCGCA	1 cut(s)	1074
GlaI	GCGC	3 cut(s)	84, 690, 1074
GluI	GCNGC	5 cut(s)	129, 168, 324, 327, 1076
HaeII	RGCGCY	1 cut(s)	86
HaeIII	GGCC	3 cut(s)	292, 396, 1067
HapII	CCGG	4 cut(s)	173, 185, 333, 792
HhaI	GCGC	3 cut(s)	85, 691, 1075
Hin1I	GRCGYC	2 cut(s)	5, 83
Hin1II	CATG	2 cut(s)	584, 720
Hin6I	GCGC	3 cut(s)	83, 689, 1073
HinP1I	GCGC	3 cut(s)	83, 689, 1073
HindIII	AAGCTT	1 cut(s)	656
HinfI	GANTC	2 cut(s)	222, 259
HpaII	CCGG	4 cut(s)	173, 185, 333, 792
Hpy166II	GTNNAC	1 cut(s)	962
Hpy188I	TCNGA	2 cut(s)	499, 883
Hpy188III	TCNNGA	2 cut(s)	239, 333
Hpy8I	GTNNAC	1 cut(s)	962
HpyAV	CCTTC	2 cut(s)	36, 827
HpyCH4III	ACNGT	2 cut(s)	22, 121
HpyCH4V	TGCA	4 cut(s)	131, 455, 890, 974
HpyF10VI	GCNNNNNNNGC	4 cut(s)	277, 695, 731, 995
HpyF3I	CTNAG	3 cut(s)	162, 498, 924
Hsp92I	GRCGYC	2 cut(s)	5, 83
Hsp92II	CATG	2 cut(s)	584, 720
HspAI	GCGC	3 cut(s)	83, 689, 1073
KasI	GGCGCC	1 cut(s)	82
Kpn2I	TCCGGA	1 cut(s)	332
Kzo9I	GATC	1 cut(s)	617
LmnI	GCTCC	5 cut(s)	230, 320, 649, 695, 1003
Lsp1109I	GCAGC	4 cut(s)	115, 310, 313, 1087
LweI	GCATC	1 cut(s)	442
MaeI	CTAG	3 cut(s)	33, 950, 983
MaeIII	GTNAC	3 cut(s)	283, 858, 1102
MalI	GATC	1 cut(s)	619
MbiI	CCGCTC	1 cut(s)	192
MboI	GATC	1 cut(s)	617
MboII	GAAGA	4 cut(s)	161, 257, 268, 1088
MflI	RGATCY	1 cut(s)	617
MhlI	GDGCHC	1 cut(s)	847
MluCI	AATT	5 cut(s)	337, 349, 477, 682, 762
Mly113I	GGCGCC	1 cut(s)	83
MnlI	CCTC	9 cut(s)	102, 303, 340, 349, 493, 499, 533, 660, 779
Mph1103I	ATGCAT	1 cut(s)	976
MroI	TCCGGA	1 cut(s)	332
MseI	TTAA	4 cut(s)	207, 660, 977, 1056
MspA1I	CMGCKG	1 cut(s)	271
MspI	CCGG	4 cut(s)	173, 185, 333, 792
MspR9I	CCNGG	1 cut(s)	106
MvaI	CCWGG	1 cut(s)	106
MwoI	GCNNNNNNNGC	4 cut(s)	277, 695, 731, 995
NarI	GGCGCC	1 cut(s)	83
NcoI	CCATGG	1 cut(s)	716
NdeII	GATC	1 cut(s)	617
NlaIII	CATG	2 cut(s)	584, 720
NlaIV	GGNNCC	7 cut(s)	24, 84, 171, 183, 619, 745, 910
NmeAIII	GCCGAG	2 cut(s)	83, 530
NmuCI	GTSAC	1 cut(s)	858
NsbI	TGCGCA	1 cut(s)	1074
NsiI	ATGCAT	1 cut(s)	976
NspV	TTCGAA	1 cut(s)	41
PfeI	GAWTC	2 cut(s)	222, 259
PflFI	GACNNNGTC	1 cut(s)	1040
PfoI	TCCNGGA	1 cut(s)	104
PkrI	GCNGC	5 cut(s)	130, 169, 325, 328, 1077
PluTI	GGCGCC	1 cut(s)	86
PshAI	GACNNNNGTC	1 cut(s)	856
Psp6I	CCWGG	1 cut(s)	104
PspGI	CCWGG	1 cut(s)	104
PspN4I	GGNNCC	7 cut(s)	24, 84, 171, 183, 619, 745, 910
PspPI	GGNCC	1 cut(s)	395
PstI	CTGCAG	1 cut(s)	133
PstNI	CAGNNNCTG	1 cut(s)	137
PsuI	RGATCY	1 cut(s)	617
PsyI	GACNNNGTC	1 cut(s)	1040
PvuII	CAGCTG	1 cut(s)	271
RsaI	GTAC	5 cut(s)	12, 67, 528, 632, 782
RsaNI	GTAC	5 cut(s)	11, 66, 527, 631, 781
SaqAI	TTAA	4 cut(s)	207, 660, 977, 1056
SatI	GCNGC	5 cut(s)	129, 168, 324, 327, 1076
Sau3AI	GATC	1 cut(s)	617
Sau96I	GGNCC	1 cut(s)	395
ScrFI	CCNGG	1 cut(s)	106
SduI	GDGCHC	1 cut(s)	847
SfaNI	GCATC	1 cut(s)	442
SfcI	CTRYAG	1 cut(s)	129
SfoI	GGCGCC	1 cut(s)	84
SfuI	TTCGAA	1 cut(s)	41
SgrAI	CRCCGGYG	1 cut(s)	184
SmlI	CTYRAG	1 cut(s)	237
SmoI	CTYRAG	1 cut(s)	237
Sse9I	AATT	5 cut(s)	337, 349, 477, 682, 762
SsiI	CCGC	4 cut(s)	30, 167, 192, 318
SspDI	GGCGCC	1 cut(s)	82
SspMI	CTAG	3 cut(s)	33, 950, 983
StyD4I	CCNGG	1 cut(s)	104
StyI	CCWWGG	1 cut(s)	716
TaaI	ACNGT	2 cut(s)	22, 121
TaqI	TCGA	4 cut(s)	41, 200, 915, 932
TaqII	GACCGA	1 cut(s)	456
TasI	AATT	5 cut(s)	337, 349, 477, 682, 762
TatI	WGTACW	1 cut(s)	780
TauI	GCSGC	1 cut(s)	170
TfiI	GAWTC	2 cut(s)	222, 259
Tru1I	TTAA	4 cut(s)	207, 660, 977, 1056
Tru9I	TTAA	4 cut(s)	207, 660, 977, 1056
TscAI	CASTG	3 cut(s)	412, 852, 1075
TseFI	GTSAC	1 cut(s)	858
TseI	GCWGC	4 cut(s)	128, 323, 326, 1075
Tsp45I	GTSAC	1 cut(s)	858
TspDTI	ATGAA	2 cut(s)	162, 332
TspGWI	ACGGA	2 cut(s)	64, 82
TspRI	CASTG	3 cut(s)	412, 852, 1075
Tth111I	GACNNNGTC	1 cut(s)	1040
XapI	RAATTY	3 cut(s)	337, 349, 682
XspI	CTAG	3 cut(s)	33, 950, 983
Zsp2I	ATGCAT	1 cut(s)	976

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.