AT3G51840

Acyl-CoA dehydrogenase, N-terminal domain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
19225360 .. 19229341
3982 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G51840.1

Sequence Viewer

Length: 1311 bp
ATGGCGGTGCTTTCATCTGCAGATCGAGCTAGTAATGAGAAGAAGGTGAAGAGTTCATACTTTGATTTGCCACCTATGGAAATGTCTGTAGCATTTCCTCAAGCAACTCCAGCCTCTACATTTCCACCTTGTACTTCAGACTATTATCATTTCAATGATCTACTGACTCCGGAAGAACAAGCTATCCGGAAGAAAGTGAGGGAATGCATGGAGAAAGAAGTTGCTCCAATAATGACAGAGTACTGGGAGAAAGCAGAATTTCCATTCCATATCACTCCAAAGCTTGGGGCTATGGGTGTTGCTGGTGGCTCGATCAAGGGTTATGGATGTCCTGGTCTCTCCATCACCGCCAATGCAATTGCCACAGCAGAAATAGCTAGAGTTGATGCAAGTTGTTCGACTTTCATTTTGGTGCATTCTTCTTTGGGCATGCTCACTATTGCACTCTGTGGATCAGAAGCACAGAAGGAGAAGTATTTGCCTTCTTTGGCTCAATTGAATACTGTGGCTTGTTGGGCTTTGACAGAGCCCGACAATGGAAGCGATGCAAGTGGTCTAGGAACGACTGCAACAAAGGTTGAAGGAGGTTGGAAAATTAATGGACAAAAGCGTTGGATTGGAAACAGCACCTTTGCAGATCTGTTGATCATCTTTGCGAGGAATACAACAACTAACCAAATCAACGGATTCATAGTCAAGAAAGATGCGCCTGGCCTAAAGGCTACTAAGATCCCAAATAAAATAGGTTTACGTATGGTTCAAAATGGAGATATTCTACTACAGAATGTCTTTGTTCCAGATGAGGATCGGTTACCTGGGGTAAATTCTTTTCAGGACACCAGCAAGGTTCTGGCTGTCTCACGTGTAATGGTGGCCTGGCAACCAATCGGCATATCAATGGGAATCTACGATATGTGCCACAGGTATCTGAAGGAGAGGAAACAGTTTGGAGCACCGTTGGCTGCTTTCCAGTTAAACCAACAGAAGCTTGTGCAGATGCTGGGTAACGTTCAAGCGATGTTTCTAATGGGTTGGCGTCTCTGCAAGCTGTATGAGACGGGTCAGATGACTCCAGGTCAAGCCAGTTTAGGAAAGGCATGGATTTCATCAAAAGCGAGAGAAACTGCTTCGCTAGGTCGGGAATTACTTGGTGGGAATGGAATTCTAGCAGATTTTCTGGTAGCAAAGGCTTTCTGTGACCTTGAACCCATTTATACATACGAAGGGACTTATGATATAAACACCTTAGTAACAGGGAGGGAAGTAACGGGTATTGCGAGTTTCAAACCGGCTACACGTAGCCGTCTCTAA

Protein Analysis

436

Amino Acids

47.56

Weight (kDa)

8.59

Isoelectric Point (pI)

31.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyl-CoA_dh_N PF02771 56 - 165 3.8e-30 Acyl-CoA dehydrogenase, N-terminal domain
Acyl-CoA_dh_M PF02770 171 - 263 1.9e-22 Acyl-CoA dehydrogenase, middle domain
Acyl-CoA_dh_1 PF00441 281 - 421 5e-26 Acyl-CoA dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011467)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 284
AccIII TCCGGA 2 cut(s) 169, 186
AciI CCGC 2 cut(s) 5, 348
AclI AACGTT 1 cut(s) 1008
AclWI GGATC 3 cut(s) 460, 724, 813
AcsI RAATTY 3 cut(s) 257, 823, 1161
AcuI CTGAAG 2 cut(s) 120, 950
AcvI CACGTG 1 cut(s) 863
AcyI GRCGYC 1 cut(s) 1036
AdeI CACNNNGTG 1 cut(s) 449
AfaI GTAC 2 cut(s) 133, 242
AfiI CCNNNNNNNGG 2 cut(s) 284, 536
AflIII ACRYGT 2 cut(s) 862, 1295
AgsI TTSAA 7 cut(s) 154, 499, 581, 761, 1013, 1205, 1285
AhdI GACNNNNNGTC 1 cut(s) 1074
AjnI CCWGG 5 cut(s) 331, 709, 814, 875, 1072
AloI GAACNNNNNNTCC 2 cut(s) 168, 200
AluBI AGCT 6 cut(s) 29, 182, 283, 377, 988, 1048
AluI AGCT 6 cut(s) 29, 182, 283, 377, 988, 1048
Alw21I GWGCWC 1 cut(s) 955
Alw26I GTCTC 4 cut(s) 341, 862, 1043, 1049
AlwI GGATC 3 cut(s) 460, 724, 813
AlwNI CAGNNNCTG 1 cut(s) 1000
Aor13HI TCCGGA 2 cut(s) 169, 186
AoxI GGCC 2 cut(s) 712, 873
ApeKI GCWGC 1 cut(s) 962
ApoI RAATTY 3 cut(s) 257, 823, 1161
ArsI GACNNNNNNTTYG 2 cut(s) 391, 423
AseI ATTAAT 1 cut(s) 597
AspLEI GCGC 1 cut(s) 709
AsuHPI GGTGA 2 cut(s) 58, 337
BanII GRGCYC 1 cut(s) 531
BarI GAAGNNNNNNTAC 2 cut(s) 41, 73
BbrPI CACGTG 1 cut(s) 863
Bbv12I GWGCWC 1 cut(s) 955
BbvI GCAGC 1 cut(s) 949
BccI CCATC 1 cut(s) 350
BceAI ACGGC 1 cut(s) 1287
BcgI CGANNNNNNTGC 2 cut(s) 378, 412
BciT130I CCWGG 5 cut(s) 333, 711, 816, 877, 1074
BclI TGATCA 1 cut(s) 645
BcoDI GTCTC 4 cut(s) 341, 862, 1043, 1049
BfaI CTAG 5 cut(s) 30, 378, 557, 1133, 1166
BfmI CTRYAG 3 cut(s) 18, 87, 779
BglII AGATCT 1 cut(s) 637
BisI GCNGC 1 cut(s) 963
BlsI GCNGC 1 cut(s) 964
BmcAI AGTACT 1 cut(s) 242
Bme1390I CCNGG 5 cut(s) 333, 711, 816, 877, 1074
BmeRI GACNNNNNGTC 1 cut(s) 1074
BmrFI CCNGG 5 cut(s) 333, 711, 816, 877, 1074
BmrI ACTGGG 1 cut(s) 253
BmsI GCATC 4 cut(s) 376, 535, 694, 987
BmuI ACTGGG 1 cut(s) 253
BpmI CTGGAG 2 cut(s) 93, 1056
BpuEI CTTGAG 1 cut(s) 84
BsaAI YACGTR 3 cut(s) 752, 863, 1298
BsaBI GATNNNNATC 1 cut(s) 804
BsaHI GRCGYC 1 cut(s) 1036
BsaI GGTCTC 1 cut(s) 341
BsaJI CCNNGG 1 cut(s) 815
BsaWI WCCGGW 2 cut(s) 169, 186
Bsc4I CCNNNNNNNGG 2 cut(s) 284, 536
Bse118I RCCGGY 1 cut(s) 1288
Bse1I ACTGG 3 cut(s) 248, 970, 1083
Bse8I GATNNNNATC 1 cut(s) 804
BseAI TCCGGA 2 cut(s) 169, 186
BseBI CCWGG 5 cut(s) 333, 711, 816, 877, 1074
BseDI CCNNGG 1 cut(s) 815
BseGI GGATG 1 cut(s) 332
BseJI GATNNNNATC 1 cut(s) 804
BseLI CCNNNNNNNGG 2 cut(s) 284, 536
BseNI ACTGG 3 cut(s) 248, 970, 1083
BseXI GCAGC 1 cut(s) 949
BseYI CCCAGC 1 cut(s) 1000
BsgI GTGCAG 1 cut(s) 1013
BshFI GGCC 2 cut(s) 714, 875
BsiHKAI GWGCWC 1 cut(s) 955
BsiSI CCGG 3 cut(s) 170, 187, 1289
BslFI GGGAC 1 cut(s) 1240
BslI CCNNNNNNNGG 2 cut(s) 284, 536
BsmAI GTCTC 4 cut(s) 341, 862, 1043, 1049
BsmBI CGTCTC 2 cut(s) 1043, 1049
BsmFI GGGAC 1 cut(s) 1240
BsmI GAATGC 2 cut(s) 209, 415
BsnI GGCC 2 cut(s) 714, 875
Bso31I GGTCTC 1 cut(s) 341
Bsp1286I GDGCHC 2 cut(s) 531, 955
Bsp13I TCCGGA 2 cut(s) 169, 186
Bsp143I GATC 8 cut(s) 22, 157, 312, 452, 637, 645, 729, 805
BspACI CCGC 2 cut(s) 5, 348
BspANI GGCC 2 cut(s) 714, 875
BspEI TCCGGA 2 cut(s) 169, 186
BspMAI CTGCAG 1 cut(s) 22
BspPI GGATC 3 cut(s) 460, 724, 813
BspTNI GGTCTC 1 cut(s) 341
BsrFI RCCGGY 1 cut(s) 1288
BsrI ACTGG 3 cut(s) 248, 970, 1083
BssAI RCCGGY 1 cut(s) 1288
BssECI CCNNGG 1 cut(s) 815
BssMI GATC 8 cut(s) 22, 157, 312, 452, 637, 645, 729, 805
BssNI GRCGYC 1 cut(s) 1036
Bst2UI CCWGG 5 cut(s) 333, 711, 816, 877, 1074
Bst4CI ACNGT 3 cut(s) 505, 945, 957
Bst6I CTCTTC 1 cut(s) 44
BstACI GRCGYC 1 cut(s) 1036
BstBAI YACGTR 3 cut(s) 752, 863, 1298
BstC8I GCNNGC 2 cut(s) 431, 1046
BstDEI CTNAG 2 cut(s) 726, 1246
BstEII GGTNACC 1 cut(s) 810
BstF5I GGATG 1 cut(s) 332
BstHHI GCGC 1 cut(s) 709
BstKTI GATC 8 cut(s) 25, 160, 315, 455, 640, 648, 732, 808
BstMAI GTCTC 4 cut(s) 341, 862, 1043, 1049
BstMBI GATC 8 cut(s) 22, 157, 312, 452, 637, 645, 729, 805
BstMWI GCNNNNNNNGC 5 cut(s) 26, 110, 374, 515, 959
BstNI CCWGG 5 cut(s) 333, 711, 816, 877, 1074
BstNSI RCATGY 1 cut(s) 433
BstPI GGTNACC 1 cut(s) 810
BstSCI CCNGG 5 cut(s) 331, 709, 814, 875, 1072
BstSFI CTRYAG 3 cut(s) 18, 87, 779
BstSNI TACGTA 1 cut(s) 752
BstV1I GCAGC 1 cut(s) 949
BstX2I RGATCY 2 cut(s) 637, 729
BstYI RGATCY 2 cut(s) 637, 729
BsuRI GGCC 2 cut(s) 714, 875
BtgZI GCGATG 2 cut(s) 558, 1031
BtsCI GGATG 1 cut(s) 332
Cac8I GCNNGC 2 cut(s) 431, 1046
CaiI CAGNNNCTG 1 cut(s) 1000
CfoI GCGC 1 cut(s) 709
Cfr10I RCCGGY 1 cut(s) 1288
CseI GACGC 1 cut(s) 1025
Csp6I GTAC 2 cut(s) 132, 241
CviAII CATG 3 cut(s) 208, 430, 1098
CviQI GTAC 2 cut(s) 132, 241
DdeI CTNAG 2 cut(s) 726, 1246
DpnI GATC 8 cut(s) 24, 159, 314, 454, 639, 647, 731, 807
DpnII GATC 8 cut(s) 22, 157, 312, 452, 637, 645, 729, 805
DraIII CACNNNGTG 1 cut(s) 449
DriI GACNNNNNGTC 1 cut(s) 1074
Eam1104I CTCTTC 1 cut(s) 44
Eam1105I GACNNNNNGTC 1 cut(s) 1074
EarI CTCTTC 1 cut(s) 44
Eco105I TACGTA 1 cut(s) 752
Eco24I GRGCYC 1 cut(s) 531
Eco31I GGTCTC 1 cut(s) 341
Eco57I CTGAAG 2 cut(s) 120, 950
Eco72I CACGTG 1 cut(s) 863
Eco91I GGTNACC 1 cut(s) 810
EcoO65I GGTNACC 1 cut(s) 810
EcoRI GAATTC 1 cut(s) 1161
EcoRII CCWGG 5 cut(s) 331, 709, 814, 875, 1072
EcoT22I ATGCAT 1 cut(s) 209
EcoT38I GRGCYC 1 cut(s) 531
Esp3I CGTCTC 2 cut(s) 1043, 1049
FaeI CATG 3 cut(s) 211, 433, 1101
FaqI GGGAC 1 cut(s) 1240
FatI CATG 3 cut(s) 207, 429, 1097
FbaI TGATCA 1 cut(s) 645
Fnu4HI GCNGC 1 cut(s) 963
FokI GGATG 1 cut(s) 339
FriOI GRGCYC 1 cut(s) 531
Fsp4HI GCNGC 1 cut(s) 963
FspBI CTAG 5 cut(s) 30, 378, 557, 1133, 1166
GlaI GCGC 1 cut(s) 708
GluI GCNGC 1 cut(s) 963
GsaI CCCAGC 1 cut(s) 1004
GsuI CTGGAG 2 cut(s) 93, 1056
HaeIII GGCC 2 cut(s) 714, 875
HapII CCGG 3 cut(s) 170, 187, 1289
HgaI GACGC 1 cut(s) 1025
HhaI GCGC 1 cut(s) 709
Hin1I GRCGYC 1 cut(s) 1036
Hin1II CATG 3 cut(s) 211, 433, 1101
Hin6I GCGC 1 cut(s) 707
HinP1I GCGC 1 cut(s) 707
HindIII AAGCTT 2 cut(s) 281, 986
HinfI GANTC 4 cut(s) 166, 687, 903, 1069
HpaII CCGG 3 cut(s) 170, 187, 1289
HphI GGTGA 2 cut(s) 58, 337
Hpy166II GTNNAC 1 cut(s) 749
Hpy188I TCNGA 4 cut(s) 139, 457, 930, 1065
Hpy188III TCNNGA 6 cut(s) 170, 187, 697, 797, 833, 1139
Hpy8I GTNNAC 1 cut(s) 749
HpyAV CCTTC 6 cut(s) 37, 460, 492, 575, 925, 1217
HpyCH4III ACNGT 3 cut(s) 505, 945, 957
HpyCH4IV ACGT 4 cut(s) 751, 862, 1008, 1297
HpyF10VI GCNNNNNNNGC 5 cut(s) 26, 110, 374, 515, 959
HpyF3I CTNAG 2 cut(s) 726, 1246
HpySE526I ACGT 4 cut(s) 751, 862, 1008, 1297
Hsp92I GRCGYC 1 cut(s) 1036
Hsp92II CATG 3 cut(s) 211, 433, 1101
HspAI GCGC 1 cut(s) 707
Kpn2I TCCGGA 2 cut(s) 169, 186
Ksp22I TGATCA 1 cut(s) 645
Kzo9I GATC 8 cut(s) 22, 157, 312, 452, 637, 645, 729, 805
LmnI GCTCC 2 cut(s) 229, 950
Lsp1109I GCAGC 1 cut(s) 949
LweI GCATC 4 cut(s) 376, 535, 694, 987
MaeI CTAG 5 cut(s) 30, 378, 557, 1133, 1166
MaeII ACGT 4 cut(s) 751, 862, 1008, 1297
MaeIII GTNAC 5 cut(s) 810, 1004, 1196, 1249, 1264
MalI GATC 8 cut(s) 24, 159, 314, 454, 639, 647, 731, 807
MboI GATC 8 cut(s) 22, 157, 312, 452, 637, 645, 729, 805
MboII GAAGA 5 cut(s) 52, 61, 185, 202, 411
MfeI CAATTG 2 cut(s) 357, 494
MflI RGATCY 2 cut(s) 637, 729
MhlI GDGCHC 2 cut(s) 531, 955
MluCI AATT 7 cut(s) 257, 357, 494, 594, 823, 1142, 1161
MlyI GAGTC 2 cut(s) 160, 1063
MmeI TCCRAC 2 cut(s) 569, 593
MnlI CCTC 8 cut(s) 108, 124, 192, 578, 651, 796, 930, 1251
Mph1103I ATGCAT 1 cut(s) 209
MroI TCCGGA 2 cut(s) 169, 186
MseI TTAA 2 cut(s) 597, 974
MslI CAYNNNNRTG 3 cut(s) 153, 410, 896
MspI CCGG 3 cut(s) 170, 187, 1289
MspR9I CCNGG 5 cut(s) 333, 711, 816, 877, 1074
MunI CAATTG 2 cut(s) 357, 494
Mva1269I GAATGC 2 cut(s) 209, 415
MvaI CCWGG 5 cut(s) 333, 711, 816, 877, 1074
MwoI GCNNNNNNNGC 5 cut(s) 26, 110, 374, 515, 959
NdeII GATC 8 cut(s) 22, 157, 312, 452, 637, 645, 729, 805
NlaIII CATG 3 cut(s) 211, 433, 1101
NmuCI GTSAC 1 cut(s) 1196
NsiI ATGCAT 1 cut(s) 209
NspI RCATGY 1 cut(s) 433
PaeI GCATGC 1 cut(s) 433
PcsI WCGNNNNNNNCGW 1 cut(s) 1274
PctI GAATGC 2 cut(s) 209, 415
PfeI GAWTC 2 cut(s) 687, 903
PflMI CCANNNNNTGG 1 cut(s) 284
PkrI GCNGC 1 cut(s) 964
PleI GAGTC 2 cut(s) 160, 1063
PmaCI CACGTG 1 cut(s) 863
PmlI CACGTG 1 cut(s) 863
PpsI GAGTC 2 cut(s) 160, 1063
Ppu21I YACGTR 3 cut(s) 752, 863, 1298
PshBI ATTAAT 1 cut(s) 597
Psp1406I AACGTT 1 cut(s) 1008
Psp6I CCWGG 5 cut(s) 331, 709, 814, 875, 1072
PspCI CACGTG 1 cut(s) 863
PspEI GGTNACC 1 cut(s) 810
PspFI CCCAGC 1 cut(s) 1000
PspGI CCWGG 5 cut(s) 331, 709, 814, 875, 1072
PstI CTGCAG 1 cut(s) 22
PstNI CAGNNNCTG 1 cut(s) 1000
PsuI RGATCY 2 cut(s) 637, 729
RsaI GTAC 2 cut(s) 133, 242
RsaNI GTAC 2 cut(s) 132, 241
RseI CAYNNNNRTG 3 cut(s) 153, 410, 896
SaqAI TTAA 2 cut(s) 597, 974
SatI GCNGC 1 cut(s) 963
Sau3AI GATC 8 cut(s) 22, 157, 312, 452, 637, 645, 729, 805
ScaI AGTACT 1 cut(s) 242
SchI GAGTC 2 cut(s) 160, 1063
ScrFI CCNGG 5 cut(s) 333, 711, 816, 877, 1074
SduI GDGCHC 2 cut(s) 531, 955
SfaNI GCATC 4 cut(s) 376, 535, 694, 987
SfcI CTRYAG 3 cut(s) 18, 87, 779
SmiMI CAYNNNNRTG 3 cut(s) 153, 410, 896
SmlI CTYRAG 1 cut(s) 99
SmoI CTYRAG 1 cut(s) 99
SnaBI TACGTA 1 cut(s) 752
SphI GCATGC 1 cut(s) 433
Sse9I AATT 7 cut(s) 257, 357, 494, 594, 823, 1142, 1161
SsiI CCGC 2 cut(s) 5, 348
SspMI CTAG 5 cut(s) 30, 378, 557, 1133, 1166
StyD4I CCNGG 5 cut(s) 331, 709, 814, 875, 1072
TaaI ACNGT 3 cut(s) 505, 945, 957
TaiI ACGT 4 cut(s) 754, 865, 1011, 1300
TaqI TCGA 3 cut(s) 25, 311, 398
TasI AATT 7 cut(s) 257, 357, 494, 594, 823, 1142, 1161
TatI WGTACW 2 cut(s) 131, 240
TfiI GAWTC 2 cut(s) 687, 903
Tru1I TTAA 2 cut(s) 597, 974
Tru9I TTAA 2 cut(s) 597, 974
TseFI GTSAC 1 cut(s) 1196
TseI GCWGC 1 cut(s) 962
Tsp45I GTSAC 1 cut(s) 1196
TspDTI ATGAA 4 cut(s) 45, 394, 679, 1095
TspGWI ACGGA 1 cut(s) 699
Van91I CCANNNNNTGG 1 cut(s) 284
VspI ATTAAT 1 cut(s) 597
XapI RAATTY 3 cut(s) 257, 823, 1161
XceI RCATGY 1 cut(s) 433
XcmI CCANNNNNNNNNTGG 1 cut(s) 847
XspI CTAG 5 cut(s) 30, 378, 557, 1133, 1166
ZrmI AGTACT 1 cut(s) 242
Zsp2I ATGCAT 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.