MD04G1155700.v1.1

Acyl-coenzyme A oxidase 4

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
24355186 .. 24359792
4607 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1155700.v1.1.491

Sequence Viewer

Length: 1314 bp
ATGACAGTTCCTCCGAATCAAGATGATGTTAAGAAGAATGAAAGGACGAATTATTTCAATTCCCCTGCATTGGATGTCTCACTTGCTTTTCCACAAGCAACGCCGGCATCCACCTTTCCTCCCTGCGCCTCGGATTATTACCAGTTTGATGATCTATTGACTCCTGAGGAGCAGGCTATGAGATTGAGAGTAAGAAAGTGTATGGAGAAAGACGTCGCTCCAATTATGGCAGAGTACTGGGAGAAGGCAGAGTTTCCATTTCAAATTATTCCAAAGCTTGGTGCATTGCGCATTGCTGGTGGCACAATCAAGGGTTATGGGTGTCCTGGTCTTTCTATTACGGCAAGTGCTTTTGCTACAGCTGAACTTGCTAGAGTTGATGCAAGCTGTTCTACTTTCGTCTTGGTTCATTCCTCACTAGCAATGCTTACTATTGCATTATGTGGTTCAGAAGCTCAAAAGCAGAAATATCTACCTTCATTGGCTGAATTTAAAACTGTAGCCTGCTGGGGTTTGACTGAGCCTGACTACGGAAGTGATGCGAGTGCCTTGAGAACGACAGCAACAAAGGTGGAAGGAGGTTGGATACTTGAGGGCCAAAAGCGATGGATAGGAAACAGTACATTTGCTGATGTCTTGGTTATTTTTGCTAGGAATACAACAACAAATCAGATTAATGGATTTATAATAAAGAAGAATGCCCCTGGACTGGCAGCTACAAAAATAGAAAATAAAATTGGTCTGCGCATTGTTCAAAATGGAGATATTCTCTTAAATAAAGTATTTGTTCCTGATGAGGAAAGGCTGCCTGGTGTTAATTCTTTTCAGGATACTAGCAAGGTTCTTGCTGTTTCGCGTGTCATGGTTGCCTGGCAACCTATTGGTTTATCTATGGGAGTCTATGATATGTGTCACAGGTATCTGAAGGAGAGGAAACAATTTGGAGCCCCCCTTGCAGCTTTCCAAATCAACCAAGAGAAACTTGTTCGTATGCTTGGTAATGTTCAAGCTATGGTTCTTATAGGCTGGCGCCTCTGCAAGCTGTATGAGGCAGGTAAAATGACTCCAGGTCATGCTAGCATGGGGAAGGCATGGATCACTCTGAGAGCAAGGGAAACAGTTGCTCTGGGGAGGGAATTGCTAGGTGGCAACGGAATCTTATCTGATTTTCTTGTTGCAAAGGCTTTCGGTGATCTGGAACCCATCTACACATTCGAAGGCACGTATGACATCAACTCCTTGGTCACCGGCAGGGAAGTCACTGGCATTGCCAGCTTCAAGCCACCTGCGTCAAGCCAACGGAGCCGCCTGTAG

Protein Analysis

438

Amino Acids

47.91

Weight (kDa)

8.76

Isoelectric Point (pI)

34.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyl-CoA_dh_N PF02771 54 - 163 1.6e-27 Acyl-CoA dehydrogenase, N-terminal domain
Acyl-CoA_dh_M PF02770 169 - 261 2.6e-20 Acyl-CoA dehydrogenase, middle domain
Acyl-CoA_dh_1 PF00441 279 - 418 1.7e-24 Acyl-CoA dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011467)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 686
AarI CACCTGC 1 cut(s) 1294
AatII GACGTC 1 cut(s) 216
Acc16I TGCGCA 2 cut(s) 290, 746
Acc36I ACCTGC 2 cut(s) 1043, 1294
AccB1I GGYRCC 1 cut(s) 1029
AccB7I CCANNNNNTGG 1 cut(s) 278
AccII CGCG 1 cut(s) 856
AciI CCGC 1 cut(s) 1306
AclWI GGATC 1 cut(s) 1103
AcsI RAATTY 1 cut(s) 488
AcuI CTGAAG 1 cut(s) 944
AcyI GRCGYC 2 cut(s) 213, 1030
AfaI GTAC 2 cut(s) 236, 622
AfiI CCNNNNNNNGG 4 cut(s) 70, 278, 530, 709
AgsI TTSAA 5 cut(s) 58, 263, 755, 1007, 1279
AhdI GACNNNNNGTC 1 cut(s) 1068
AjnI CCWGG 5 cut(s) 325, 703, 808, 869, 1066
AjuI GAANNNNNNNTTGG 2 cut(s) 720, 752
AluBI AGCT 9 cut(s) 277, 362, 387, 455, 716, 959, 1010, 1042, 1275
AluI AGCT 9 cut(s) 277, 362, 387, 455, 716, 959, 1010, 1042, 1275
Alw26I GTCTC 1 cut(s) 82
AlwI GGATC 1 cut(s) 1103
AoxI GGCC 1 cut(s) 595
ApeKI GCWGC 3 cut(s) 713, 805, 956
ApoI RAATTY 1 cut(s) 488
AseI ATTAAT 1 cut(s) 675
Asp700I GAANNNNTTC 1 cut(s) 53
AspLEI GCGC 4 cut(s) 128, 291, 747, 1032
AspS9I GGNCC 1 cut(s) 595
AsuHPI GGTGA 2 cut(s) 1202, 1237
AsuII TTCGAA 1 cut(s) 1215
AsuNHI GCTAGC 1 cut(s) 1076
AxyI CCTNAGG 1 cut(s) 165
BanI GGYRCC 1 cut(s) 1029
BanII GRGCYC 1 cut(s) 949
BbvI GCAGC 3 cut(s) 725, 792, 968
BccI CCATC 2 cut(s) 600, 1211
BceAI ACGGC 1 cut(s) 357
BciT130I CCWGG 5 cut(s) 327, 705, 810, 871, 1068
BciVI GTATCC 2 cut(s) 579, 823
BcoDI GTCTC 1 cut(s) 82
BfaI CTAG 6 cut(s) 372, 419, 651, 834, 1077, 1142
BfmI CTRYAG 3 cut(s) 357, 498, 1310
BfoI RGCGCY 1 cut(s) 1033
BfuAI ACCTGC 2 cut(s) 1043, 1294
BfuI GTATCC 2 cut(s) 579, 823
BisI GCNGC 4 cut(s) 714, 806, 957, 1306
BlsI GCNGC 4 cut(s) 715, 807, 958, 1307
BmcAI AGTACT 1 cut(s) 236
Bme1390I CCNGG 5 cut(s) 327, 705, 810, 871, 1068
BmeRI GACNNNNNGTC 1 cut(s) 1068
BmgT120I GGNCC 1 cut(s) 595
BmiI GGNNCC 4 cut(s) 946, 1031, 1200, 1304
BmrFI CCNGG 5 cut(s) 327, 705, 810, 871, 1068
BmrI ACTGGG 1 cut(s) 247
BmsI GCATC 3 cut(s) 116, 370, 529
BmtI GCTAGC 1 cut(s) 1080
BmuI ACTGGG 1 cut(s) 247
BplI GAGNNNNNCTC 2 cut(s) 753, 785
BpmI CTGGAG 1 cut(s) 1050
Bpu14I TTCGAA 1 cut(s) 1215
BpuEI CTTGAG 2 cut(s) 571, 611
BsaAI YACGTR 1 cut(s) 1224
BsaHI GRCGYC 2 cut(s) 213, 1030
BsaJI CCNNGG 3 cut(s) 129, 703, 1239
BsaXI ACNNNNNCTCC 5 cut(s) 25, 103, 133, 1220, 1250
Bsc4I CCNNNNNNNGG 4 cut(s) 70, 278, 530, 709
Bse118I RCCGGY 2 cut(s) 103, 1247
Bse1I ACTGG 4 cut(s) 142, 242, 714, 1267
Bse21I CCTNAGG 1 cut(s) 165
Bse3DI GCAATG 4 cut(s) 284, 291, 429, 1266
BseBI CCWGG 5 cut(s) 327, 705, 810, 871, 1068
BseDI CCNNGG 3 cut(s) 129, 703, 1239
BseGI GGATG 2 cut(s) 79, 107
BseLI CCNNNNNNNGG 4 cut(s) 70, 278, 530, 709
BseMI GCAATG 4 cut(s) 284, 291, 429, 1266
BseMII CTCAG 3 cut(s) 156, 510, 1094
BseNI ACTGG 4 cut(s) 142, 242, 714, 1267
BseRI GAGGAG 1 cut(s) 182
BseXI GCAGC 3 cut(s) 725, 792, 968
BseYI CCCAGC 1 cut(s) 507
Bsh1236I CGCG 1 cut(s) 856
BshFI GGCC 1 cut(s) 597
BshNI GGYRCC 1 cut(s) 1029
BsiSI CCGG 2 cut(s) 104, 1248
BslI CCNNNNNNNGG 4 cut(s) 70, 278, 530, 709
BsmAI GTCTC 1 cut(s) 82
BsmI GAATGC 1 cut(s) 703
BsnI GGCC 1 cut(s) 597
Bsp119I TTCGAA 1 cut(s) 1215
Bsp1286I GDGCHC 1 cut(s) 949
Bsp143I GATC 3 cut(s) 151, 1095, 1192
BspACI CCGC 1 cut(s) 1306
BspANI GGCC 1 cut(s) 597
BspCNI CTCAG 3 cut(s) 157, 511, 1095
BspFNI CGCG 1 cut(s) 856
BspLI GGNNCC 4 cut(s) 946, 1031, 1200, 1304
BspMI ACCTGC 2 cut(s) 1043, 1294
BspOI GCTAGC 1 cut(s) 1080
BspPI GGATC 1 cut(s) 1103
BspT104I TTCGAA 1 cut(s) 1215
BspT107I GGYRCC 1 cut(s) 1029
BsrDI GCAATG 4 cut(s) 284, 291, 429, 1266
BsrFI RCCGGY 2 cut(s) 103, 1247
BsrI ACTGG 4 cut(s) 142, 242, 714, 1267
BssAI RCCGGY 2 cut(s) 103, 1247
BssECI CCNNGG 3 cut(s) 129, 703, 1239
BssMI GATC 3 cut(s) 151, 1095, 1192
BssNI GRCGYC 2 cut(s) 213, 1030
BssT1I CCWWGG 1 cut(s) 1239
Bst2UI CCWGG 5 cut(s) 327, 705, 810, 871, 1068
Bst4CI ACNGT 4 cut(s) 7, 499, 620, 1120
BstACI GRCGYC 2 cut(s) 213, 1030
BstBAI YACGTR 1 cut(s) 1224
BstBI TTCGAA 1 cut(s) 1215
BstC8I GCNNGC 8 cut(s) 105, 174, 385, 505, 1028, 1040, 1078, 1273
BstDEI CTNAG 3 cut(s) 165, 519, 1103
BstEII GGTNACC 1 cut(s) 1243
BstF5I GGATG 2 cut(s) 79, 107
BstFNI CGCG 1 cut(s) 856
BstH2I RGCGCY 1 cut(s) 1033
BstHHI GCGC 4 cut(s) 128, 291, 747, 1032
BstKTI GATC 3 cut(s) 154, 1098, 1195
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 3 cut(s) 151, 1095, 1192
BstMWI GCNNNNNNNGC 5 cut(s) 104, 368, 953, 1272, 1302
BstNI CCWGG 5 cut(s) 327, 705, 810, 871, 1068
BstPI GGTNACC 1 cut(s) 1243
BstSCI CCNGG 5 cut(s) 325, 703, 808, 869, 1066
BstSFI CTRYAG 3 cut(s) 357, 498, 1310
BstUI CGCG 1 cut(s) 856
BstV1I GCAGC 3 cut(s) 725, 792, 968
Bsu36I CCTNAGG 1 cut(s) 165
BsuI GTATCC 2 cut(s) 579, 823
BsuRI GGCC 1 cut(s) 597
BtgZI GCGATG 1 cut(s) 619
BtsCI GGATG 2 cut(s) 79, 107
BtsIMutI CAGTG 1 cut(s) 1260
BveI ACCTGC 2 cut(s) 1043, 1294
Cac8I GCNNGC 8 cut(s) 105, 174, 385, 505, 1028, 1040, 1078, 1273
CfoI GCGC 4 cut(s) 128, 291, 747, 1032
Cfr10I RCCGGY 2 cut(s) 103, 1247
Cfr13I GGNCC 1 cut(s) 595
CseI GACGC 1 cut(s) 1278
Csp6I GTAC 2 cut(s) 235, 621
CspCI CAANNNNNGTGG 2 cut(s) 552, 587
CviAII CATG 4 cut(s) 862, 1073, 1081, 1092
CviQI GTAC 2 cut(s) 235, 621
DdeI CTNAG 3 cut(s) 165, 519, 1103
DinI GGCGCC 1 cut(s) 1031
DpnI GATC 3 cut(s) 153, 1097, 1194
DpnII GATC 3 cut(s) 151, 1095, 1192
DraI TTTAAA 1 cut(s) 493
DriI GACNNNNNGTC 1 cut(s) 1068
Eam1105I GACNNNNNGTC 1 cut(s) 1068
Eco130I CCWWGG 1 cut(s) 1239
Eco24I GRGCYC 1 cut(s) 949
Eco57I CTGAAG 1 cut(s) 944
Eco81I CCTNAGG 1 cut(s) 165
Eco91I GGTNACC 1 cut(s) 1243
EcoO65I GGTNACC 1 cut(s) 1243
EcoRII CCWGG 5 cut(s) 325, 703, 808, 869, 1066
EcoT14I CCWWGG 1 cut(s) 1239
EcoT38I GRGCYC 1 cut(s) 949
EgeI GGCGCC 1 cut(s) 1031
EheI GGCGCC 1 cut(s) 1031
ErhI CCWWGG 1 cut(s) 1239
FaeI CATG 4 cut(s) 865, 1076, 1084, 1095
FalI AAGNNNNNCTT 2 cut(s) 966, 998
FatI CATG 4 cut(s) 861, 1072, 1080, 1091
Fnu4HI GCNGC 4 cut(s) 714, 806, 957, 1306
FokI GGATG 2 cut(s) 86, 94
FriOI GRGCYC 1 cut(s) 949
Fsp4HI GCNGC 4 cut(s) 714, 806, 957, 1306
FspBI CTAG 6 cut(s) 372, 419, 651, 834, 1077, 1142
FspI TGCGCA 2 cut(s) 290, 746
GlaI GCGC 4 cut(s) 127, 290, 746, 1031
GluI GCNGC 4 cut(s) 714, 806, 957, 1306
GsaI CCCAGC 1 cut(s) 511
GsuI CTGGAG 1 cut(s) 1050
HaeII RGCGCY 1 cut(s) 1033
HaeIII GGCC 1 cut(s) 597
HapII CCGG 2 cut(s) 104, 1248
HgaI GACGC 1 cut(s) 1278
HhaI GCGC 4 cut(s) 128, 291, 747, 1032
Hin1I GRCGYC 2 cut(s) 213, 1030
Hin1II CATG 4 cut(s) 865, 1076, 1084, 1095
Hin6I GCGC 4 cut(s) 126, 289, 745, 1030
HinP1I GCGC 4 cut(s) 126, 289, 745, 1030
HindIII AAGCTT 1 cut(s) 275
HinfI GANTC 5 cut(s) 16, 160, 897, 1063, 1155
HpaII CCGG 2 cut(s) 104, 1248
HphI GGTGA 2 cut(s) 1202, 1237
Hpy188I TCNGA 7 cut(s) 15, 133, 451, 672, 924, 1104, 1165
Hpy188III TCNNGA 5 cut(s) 20, 164, 791, 827, 1196
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 6 cut(s) 238, 486, 569, 919, 1081, 1211
HpyCH4III ACNGT 4 cut(s) 7, 499, 620, 1120
HpyCH4IV ACGT 2 cut(s) 213, 1223
HpyCH4V TGCA 7 cut(s) 68, 284, 383, 437, 956, 1038, 1178
HpyF10VI GCNNNNNNNGC 5 cut(s) 104, 368, 953, 1272, 1302
HpyF3I CTNAG 3 cut(s) 165, 519, 1103
HpySE526I ACGT 2 cut(s) 213, 1223
Hsp92I GRCGYC 2 cut(s) 213, 1030
Hsp92II CATG 4 cut(s) 865, 1076, 1084, 1095
HspAI GCGC 4 cut(s) 126, 289, 745, 1030
KasI GGCGCC 1 cut(s) 1029
KroI GCCGGC 1 cut(s) 103
KroNI GCCGGC 1 cut(s) 105
Kzo9I GATC 3 cut(s) 151, 1095, 1192
LmnI GCTCC 4 cut(s) 169, 223, 944, 1302
Lsp1109I GCAGC 3 cut(s) 725, 792, 968
LweI GCATC 3 cut(s) 116, 370, 529
MaeI CTAG 6 cut(s) 372, 419, 651, 834, 1077, 1142
MaeII ACGT 2 cut(s) 213, 1223
MaeIII GTNAC 3 cut(s) 911, 1243, 1258
MalI GATC 3 cut(s) 153, 1097, 1194
MboI GATC 3 cut(s) 151, 1095, 1192
MboII GAAGA 2 cut(s) 46, 706
MhlI GDGCHC 1 cut(s) 949
MluCI AATT 9 cut(s) 49, 58, 222, 264, 488, 735, 817, 938, 1136
Mly113I GGCGCC 1 cut(s) 1030
MlyI GAGTC 3 cut(s) 154, 906, 1057
MmeI TCCRAC 1 cut(s) 563
MroNI GCCGGC 1 cut(s) 103
MroXI GAANNNNTTC 1 cut(s) 53
MseI TTAA 5 cut(s) 30, 492, 675, 773, 816
MspA1I CMGCKG 1 cut(s) 362
MspI CCGG 2 cut(s) 104, 1248
MspR9I CCNGG 5 cut(s) 327, 705, 810, 871, 1068
Mva1269I GAATGC 1 cut(s) 703
MvaI CCWGG 5 cut(s) 327, 705, 810, 871, 1068
MvnI CGCG 1 cut(s) 856
MwoI GCNNNNNNNGC 5 cut(s) 104, 368, 953, 1272, 1302
NaeI GCCGGC 1 cut(s) 105
NarI GGCGCC 1 cut(s) 1030
NdeII GATC 3 cut(s) 151, 1095, 1192
NgoMIV GCCGGC 1 cut(s) 103
NheI GCTAGC 1 cut(s) 1076
NlaIII CATG 4 cut(s) 865, 1076, 1084, 1095
NlaIV GGNNCC 4 cut(s) 946, 1031, 1200, 1304
NmuCI GTSAC 3 cut(s) 911, 1243, 1258
NsbI TGCGCA 2 cut(s) 290, 746
NspV TTCGAA 1 cut(s) 1215
PaqCI CACCTGC 1 cut(s) 1294
PctI GAATGC 1 cut(s) 703
PdiI GCCGGC 1 cut(s) 105
PdmI GAANNNNTTC 1 cut(s) 53
PfeI GAWTC 2 cut(s) 16, 1155
PflMI CCANNNNNTGG 1 cut(s) 278
PkrI GCNGC 4 cut(s) 715, 807, 958, 1307
PleI GAGTC 3 cut(s) 154, 905, 1057
PluTI GGCGCC 1 cut(s) 1033
PpsI GAGTC 3 cut(s) 154, 905, 1057
Ppu21I YACGTR 1 cut(s) 1224
PshBI ATTAAT 1 cut(s) 675
PsiI TTATAA 1 cut(s) 686
Psp6I CCWGG 5 cut(s) 325, 703, 808, 869, 1066
PspEI GGTNACC 1 cut(s) 1243
PspFI CCCAGC 1 cut(s) 507
PspGI CCWGG 5 cut(s) 325, 703, 808, 869, 1066
PspN4I GGNNCC 4 cut(s) 946, 1031, 1200, 1304
PspPI GGNCC 1 cut(s) 595
PvuII CAGCTG 1 cut(s) 362
RsaI GTAC 2 cut(s) 236, 622
RsaNI GTAC 2 cut(s) 235, 621
SaqAI TTAA 5 cut(s) 30, 492, 675, 773, 816
SatI GCNGC 4 cut(s) 714, 806, 957, 1306
Sau3AI GATC 3 cut(s) 151, 1095, 1192
Sau96I GGNCC 1 cut(s) 595
ScaI AGTACT 1 cut(s) 236
SchI GAGTC 3 cut(s) 154, 906, 1057
ScrFI CCNGG 5 cut(s) 327, 705, 810, 871, 1068
SduI GDGCHC 1 cut(s) 949
SfaNI GCATC 3 cut(s) 116, 370, 529
SfcI CTRYAG 3 cut(s) 357, 498, 1310
SfoI GGCGCC 1 cut(s) 1031
SfuI TTCGAA 1 cut(s) 1215
SmlI CTYRAG 2 cut(s) 550, 590
SmoI CTYRAG 2 cut(s) 550, 590
Sse9I AATT 9 cut(s) 49, 58, 222, 264, 488, 735, 817, 938, 1136
SsiI CCGC 1 cut(s) 1306
SspDI GGCGCC 1 cut(s) 1029
SspMI CTAG 6 cut(s) 372, 419, 651, 834, 1077, 1142
StyD4I CCNGG 5 cut(s) 325, 703, 808, 869, 1066
StyI CCWWGG 1 cut(s) 1239
TaaI ACNGT 4 cut(s) 7, 499, 620, 1120
TaiI ACGT 2 cut(s) 216, 1226
TaqI TCGA 1 cut(s) 1215
TasI AATT 9 cut(s) 49, 58, 222, 264, 488, 735, 817, 938, 1136
TatI WGTACW 2 cut(s) 234, 620
TauI GCSGC 1 cut(s) 1308
TfiI GAWTC 2 cut(s) 16, 1155
Tru1I TTAA 5 cut(s) 30, 492, 675, 773, 816
Tru9I TTAA 5 cut(s) 30, 492, 675, 773, 816
TscAI CASTG 1 cut(s) 1267
TseFI GTSAC 3 cut(s) 911, 1243, 1258
TseI GCWGC 3 cut(s) 713, 805, 956
Tsp45I GTSAC 3 cut(s) 911, 1243, 1258
TspDTI ATGAA 3 cut(s) 54, 398, 468
TspGWI ACGGA 2 cut(s) 546, 1167
TspRI CASTG 1 cut(s) 1267
Van91I CCANNNNNTGG 1 cut(s) 278
VspI ATTAAT 1 cut(s) 675
XapI RAATTY 1 cut(s) 488
XmnI GAANNNNTTC 1 cut(s) 53
XspI CTAG 6 cut(s) 372, 419, 651, 834, 1077, 1142
ZraI GACGTC 1 cut(s) 214
ZrmI AGTACT 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.