Rorug03G0059400

Acyl-coenzyme A oxidase 4

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
4454517 .. 4455959
1443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0059400.1

Sequence Viewer

Length: 1443 bp
ATGTCTAAGAACAATAATAAAGGCATCAAGGAAGATCTTGCCACAAGAGTGTCGAAGATGAAGGGTAATTTGATGGCTCAGGATCTGAGCAAACTGGATCTAACTCAGTTAGATCCACTCTCGCCGGAAGTTATATCTCGTCAGGCCACGATCAACATTGGCACAATAGGTCACGTGGCTCATGGTAAGTCAACGGTGGTCAAAGCAATTTCGGGGGTTCAGACAGTTCGTTTCAAACAGGAGCTGGAGCGCAACATAACTATAAAAACAGGATATGCTAATGCCAAAATTTACAAGTGCAGTAGCTGCCCCCGACCCGACTGCTACAAGTCTTATGGCAGTGGAAAGGAAGACAATCCTCTCTGTGAACGGTGTGGGAGTCAGATGAGACTGGAGAGACATGTGTCCTTTGTAGATTGCCCCGGTCACGAAGCACTAATGGCTACTATGCTTAATGGTGTGTCCATTATGGATGGAGCGTTACTTGTTGTAGCTGCTGACGAACAGTTTCCCCAAGAACAAACCAAGGAGCATCTGGAAGCTGTTGAAATCATGTCTCTTAAACACAACATTGTGCTTCAAAACAAAGTTGACCTTGTCCGAGAGAAGGCAATCGAGCAGCAAAAGGAGATGAAGGAGTGGTTTCGTGGCACGGTAGCTGAAGATGCAACAATTGTGCCTATTGTTGCTCAGTTGAAGTATAATATAGATGTAGTGAACGAGTACATTGTCAAGAACATCCCCATTCCGAAAAGGGACTTTGCTTCGCCTCCTTATATGAGGATCATACGTTCGTTTGATGTCAACAAACCCGGGTTTGGGAGTGATGACATAAAAGGTGCTGTGGTTGGTGGAACTCTTCTTAGGGGTGTTTTGAAACTGAACCAATTGGTGGAGGTTCGTCCTGGTCTTGTTGTCAAAGACGAGAGGGGGAAATTCTTGAGGTGCACGCCATTGTATTCTAGAATAGTTTCCTTGTTTGCTGAGGAAAACGAGTTACAGTTTGCTGTGCCAGGAGGTCTGATTGGGGTTGGCACAACCTTGGATCCTGCTTTGGCTCGCGGCGATAAATTGGTGGGTCAAGTAGTTGGTGATGTTGGCTCACTCCCTGATGTGTATGCACAACTTGAGGTGCACTACCACATGACAAAGGGATCAGCTGACAAGAAAGGGCTATCAAAGTTAAGCAAGAATGACATTGTGATGTTAAATATTGGATCCAAGGCTACAGAAGCAAAGGTTGTTGCTGTGAGGGAAAGTATGGTGAAGTTGCGACTAATCACATCTCCAGTTTGCACGAACATAGGTGACAAAGTGGCGATCAGTCAAAGAATCGAGCAGCATAAGCCCCGGTATCTTATCGCTTGGGGCGAGATTACAGCTGGGAGAACACTCGATATCGAACCTTGCCCTACTTTAGTAGCTGACTCCACAAATCAGTAA

Protein Analysis

480

Amino Acids

52.77

Weight (kDa)

8.76

Isoelectric Point (pI)

37.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GTP_EFTU PF00009 50 - 248 3.7e-25 Elongation factor Tu GTP binding domain
GTP_EFTU_D2 PF03144 280 - 350 4.3e-06 Elongation factor Tu domain 2
eIF2_C PF09173 385 - 459 2.1e-15 Initiation factor eIF2 gamma, C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011467)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 892
AccII CGCG 1 cut(s) 1062
AciI CCGC 1 cut(s) 1062
AclWI GGATC 9 cut(s) 90, 105, 107, 791, 1040, 1053, 1162, 1212, 1225
AcsI RAATTY 2 cut(s) 288, 935
AcuI CTGAAG 1 cut(s) 681
AcvI CACGTG 1 cut(s) 175
AfaI GTAC 1 cut(s) 725
AfiI CCNNNNNNNGG 4 cut(s) 607, 818, 819, 892
AflIII ACRYGT 1 cut(s) 400
AgsI TTSAA 5 cut(s) 235, 548, 581, 697, 877
AjnI CCWGG 2 cut(s) 904, 1012
AleI CACNNNNGTG 1 cut(s) 47
AloI GAACNNNNNNTCC 2 cut(s) 775, 807
AluBI AGCT 8 cut(s) 244, 306, 494, 542, 659, 1160, 1382, 1424
AluI AGCT 8 cut(s) 244, 306, 494, 542, 659, 1160, 1382, 1424
Alw21I GWGCWC 2 cut(s) 950, 1137
Alw26I GTCTC 3 cut(s) 382, 391, 561
Alw44I GTGCAC 2 cut(s) 946, 1133
AlwI GGATC 9 cut(s) 90, 105, 107, 791, 1040, 1053, 1162, 1212, 1225
AlwNI CAGNNNCTG 3 cut(s) 85, 244, 306
Ama87I CYCGRG 1 cut(s) 812
AoxI GGCC 1 cut(s) 144
ApaLI GTGCAC 2 cut(s) 946, 1133
ApeKI GCWGC 4 cut(s) 306, 494, 619, 1339
ApoI RAATTY 2 cut(s) 288, 935
Asp700I GAANNNNTTC 2 cut(s) 507, 970
AspLEI GCGC 1 cut(s) 252
AsuC2I CCSGG 4 cut(s) 423, 813, 814, 1351
AsuHPI GGTGA 3 cut(s) 1103, 1276, 1319
AvaI CYCGRG 1 cut(s) 812
BaeGI GKGCMC 2 cut(s) 950, 1137
BamHI GGATCC 2 cut(s) 1045, 1217
BbrPI CACGTG 1 cut(s) 175
BbsI GAAGAC 1 cut(s) 357
Bbv12I GWGCWC 2 cut(s) 950, 1137
BbvCI CCTCAGC 1 cut(s) 984
BbvI GCAGC 4 cut(s) 293, 481, 631, 1351
BccI CCATC 2 cut(s) 67, 467
BcgI CGANNNNNNTGC 2 cut(s) 303, 337
BciT130I CCWGG 2 cut(s) 906, 1014
BcnI CCSGG 4 cut(s) 423, 813, 814, 1351
BcoDI GTCTC 3 cut(s) 382, 391, 561
BfaI CTAG 1 cut(s) 963
BfmI CTRYAG 1 cut(s) 1227
BglII AGATCT 1 cut(s) 34
BisI GCNGC 5 cut(s) 307, 495, 620, 1063, 1340
BlsI GCNGC 5 cut(s) 308, 496, 621, 1064, 1341
Bme1390I CCNGG 6 cut(s) 423, 813, 814, 906, 1014, 1351
BmeT110I CYCGRG 1 cut(s) 812
BmiI GGNNCC 2 cut(s) 1047, 1219
BmrFI CCNGG 6 cut(s) 423, 813, 814, 906, 1014, 1351
BmsI GCATC 3 cut(s) 33, 541, 655
BoxI GACNNNNGTC 1 cut(s) 403
BpiI GAAGAC 1 cut(s) 357
BpmI CTGGAG 3 cut(s) 266, 413, 1272
Bpu10I CCTNAGC 2 cut(s) 78, 984
BpuEI CTTGAG 2 cut(s) 961, 1148
BpuMI CCSGG 4 cut(s) 423, 813, 814, 1351
BsaAI YACGTR 1 cut(s) 175
BsaJI CCNNGG 6 cut(s) 421, 525, 812, 1041, 1221, 1349
Bsc4I CCNNNNNNNGG 4 cut(s) 607, 818, 819, 892
Bse1I ACTGG 3 cut(s) 99, 396, 1289
BseBI CCWGG 2 cut(s) 906, 1014
BseDI CCNNGG 6 cut(s) 421, 525, 812, 1041, 1221, 1349
BseGI GGATG 2 cut(s) 478, 738
BseLI CCNNNNNNNGG 4 cut(s) 607, 818, 819, 892
BseMII CTCAG 5 cut(s) 77, 92, 119, 704, 975
BseNI ACTGG 3 cut(s) 99, 396, 1289
BseSI GKGCMC 2 cut(s) 950, 1137
BseXI GCAGC 4 cut(s) 293, 481, 631, 1351
BseYI CCCAGC 1 cut(s) 1382
BsgI GTGCAG 1 cut(s) 319
Bsh1236I CGCG 1 cut(s) 1062
BshFI GGCC 1 cut(s) 146
BsiHKAI GWGCWC 2 cut(s) 950, 1137
BsiHKCI CYCGRG 1 cut(s) 812
BsiSI CCGG 4 cut(s) 125, 423, 813, 1351
BslFI GGGAC 1 cut(s) 770
BslI CCNNNNNNNGG 4 cut(s) 607, 818, 819, 892
BsmAI GTCTC 3 cut(s) 382, 391, 561
BsmFI GGGAC 1 cut(s) 770
BsnI GGCC 1 cut(s) 146
BsoBI CYCGRG 1 cut(s) 812
Bsp1286I GDGCHC 2 cut(s) 950, 1137
BspACI CCGC 1 cut(s) 1062
BspANI GGCC 1 cut(s) 146
BspCNI CTCAG 5 cut(s) 78, 91, 118, 703, 976
BspFNI CGCG 1 cut(s) 1062
BspLI GGNNCC 2 cut(s) 1047, 1219
BspPI GGATC 9 cut(s) 90, 105, 107, 791, 1040, 1053, 1162, 1212, 1225
BsrI ACTGG 3 cut(s) 99, 396, 1289
BssECI CCNNGG 6 cut(s) 421, 525, 812, 1041, 1221, 1349
BssT1I CCWWGG 3 cut(s) 525, 1041, 1221
Bst2UI CCWGG 2 cut(s) 906, 1014
Bst4CI ACNGT 6 cut(s) 196, 226, 372, 507, 655, 1002
Bst6I CTCTTC 1 cut(s) 864
BstAPI GCANNNNNTGC 1 cut(s) 306
BstBAI YACGTR 1 cut(s) 175
BstC8I GCNNGC 2 cut(s) 950, 1060
BstDEI CTNAG 7 cut(s) 6, 78, 86, 105, 690, 863, 984
BstF5I GGATG 2 cut(s) 478, 738
BstFNI CGCG 1 cut(s) 1062
BstHHI GCGC 1 cut(s) 252
BstMAI GTCTC 3 cut(s) 382, 391, 561
BstMWI GCNNNNNNNGC 5 cut(s) 306, 440, 665, 1232, 1345
BstNI CCWGG 2 cut(s) 906, 1014
BstNSI RCATGY 1 cut(s) 404
BstPAI GACNNNNGTC 1 cut(s) 403
BstSCI CCNGG 6 cut(s) 421, 811, 812, 904, 1012, 1349
BstSFI CTRYAG 1 cut(s) 1227
BstSLI GKGCMC 2 cut(s) 950, 1137
BstUI CGCG 1 cut(s) 1062
BstV1I GCAGC 4 cut(s) 293, 481, 631, 1351
BstV2I GAAGAC 1 cut(s) 357
BstX2I RGATCY 6 cut(s) 34, 82, 97, 112, 1045, 1217
BstYI RGATCY 6 cut(s) 34, 82, 97, 112, 1045, 1217
BsuRI GGCC 1 cut(s) 146
BtsCI GGATG 2 cut(s) 478, 738
BtsI GCAGTG 1 cut(s) 346
BtsIMutI CAGTG 1 cut(s) 346
Cac8I GCNNGC 2 cut(s) 950, 1060
CaiI CAGNNNCTG 3 cut(s) 85, 244, 306
CfoI GCGC 1 cut(s) 252
Cfr9I CCCGGG 1 cut(s) 812
Csp6I GTAC 1 cut(s) 724
CviAII CATG 4 cut(s) 182, 401, 553, 1144
CviQI GTAC 1 cut(s) 724
DdeI CTNAG 7 cut(s) 6, 78, 86, 105, 690, 863, 984
Eam1104I CTCTTC 1 cut(s) 864
EarI CTCTTC 1 cut(s) 864
Eco130I CCWWGG 3 cut(s) 525, 1041, 1221
Eco32I GATATC 1 cut(s) 1399
Eco57I CTGAAG 1 cut(s) 681
Eco72I CACGTG 1 cut(s) 175
Eco88I CYCGRG 1 cut(s) 812
EcoRII CCWGG 2 cut(s) 904, 1012
EcoRV GATATC 1 cut(s) 1399
EcoT14I CCWWGG 3 cut(s) 525, 1041, 1221
ErhI CCWWGG 3 cut(s) 525, 1041, 1221
FaeI CATG 4 cut(s) 185, 404, 556, 1147
FalI AAGNNNNNCTT 2 cut(s) 579, 611
FaqI GGGAC 1 cut(s) 770
FatI CATG 4 cut(s) 181, 400, 552, 1143
Fnu4HI GCNGC 5 cut(s) 307, 495, 620, 1063, 1340
FokI GGATG 2 cut(s) 485, 725
Fsp4HI GCNGC 5 cut(s) 307, 495, 620, 1063, 1340
FspBI CTAG 1 cut(s) 963
GlaI GCGC 1 cut(s) 251
GluI GCNGC 5 cut(s) 307, 495, 620, 1063, 1340
GsaI CCCAGC 1 cut(s) 1386
GsuI CTGGAG 3 cut(s) 266, 413, 1272
HaeIII GGCC 1 cut(s) 146
HapII CCGG 4 cut(s) 125, 423, 813, 1351
HhaI GCGC 1 cut(s) 252
Hin1II CATG 4 cut(s) 185, 404, 556, 1147
Hin6I GCGC 1 cut(s) 250
HinP1I GCGC 1 cut(s) 250
HincII GTYRAC 3 cut(s) 192, 592, 805
HindII GTYRAC 3 cut(s) 192, 592, 805
HinfI GANTC 3 cut(s) 379, 1332, 1427
HpaII CCGG 4 cut(s) 125, 423, 813, 1351
HphI GGTGA 3 cut(s) 1103, 1276, 1319
Hpy166II GTNNAC 7 cut(s) 192, 368, 592, 718, 805, 948, 1135
Hpy188I TCNGA 6 cut(s) 87, 222, 384, 602, 750, 1023
Hpy188III TCNNGA 6 cut(s) 80, 428, 536, 733, 940, 963
Hpy8I GTNNAC 7 cut(s) 192, 368, 592, 718, 805, 948, 1135
HpyAV CCTTC 3 cut(s) 55, 601, 628
HpyCH4III ACNGT 6 cut(s) 196, 226, 372, 507, 655, 1002
HpyCH4IV ACGT 2 cut(s) 174, 790
HpyCH4V TGCA 6 cut(s) 300, 668, 948, 1121, 1135, 1296
HpyF10VI GCNNNNNNNGC 5 cut(s) 306, 440, 665, 1232, 1345
HpyF3I CTNAG 7 cut(s) 6, 78, 86, 105, 690, 863, 984
HpySE526I ACGT 2 cut(s) 174, 790
Hsp92II CATG 4 cut(s) 185, 404, 556, 1147
HspAI GCGC 1 cut(s) 250
LmnI GCTCC 4 cut(s) 241, 247, 476, 529
Lsp1109I GCAGC 4 cut(s) 293, 481, 631, 1351
LweI GCATC 3 cut(s) 33, 541, 655
MaeI CTAG 1 cut(s) 963
MaeII ACGT 2 cut(s) 174, 790
MaeIII GTNAC 5 cut(s) 170, 425, 480, 996, 1307
MboII GAAGA 5 cut(s) 44, 67, 362, 674, 851
MfeI CAATTG 2 cut(s) 672, 887
MflI RGATCY 6 cut(s) 34, 82, 97, 112, 1045, 1217
MhlI GDGCHC 2 cut(s) 950, 1137
MluCI AATT 7 cut(s) 67, 207, 288, 672, 887, 935, 1070
MlyI GAGTC 2 cut(s) 388, 1421
MroXI GAANNNNTTC 2 cut(s) 507, 970
MseI TTAA 4 cut(s) 453, 561, 1184, 1208
MslI CAYNNNNRTG 2 cut(s) 47, 1202
MspA1I CMGCKG 2 cut(s) 1160, 1382
MspI CCGG 4 cut(s) 125, 423, 813, 1351
MspR9I CCNGG 6 cut(s) 423, 813, 814, 906, 1014, 1351
MunI CAATTG 2 cut(s) 672, 887
MvaI CCWGG 2 cut(s) 906, 1014
MvnI CGCG 1 cut(s) 1062
MwoI GCNNNNNNNGC 5 cut(s) 306, 440, 665, 1232, 1345
NciI CCSGG 4 cut(s) 423, 813, 814, 1351
NlaIII CATG 4 cut(s) 185, 404, 556, 1147
NlaIV GGNNCC 2 cut(s) 1047, 1219
NmuCI GTSAC 3 cut(s) 170, 425, 1307
NspI RCATGY 1 cut(s) 404
OliI CACNNNNGTG 1 cut(s) 47
PciI ACATGT 1 cut(s) 400
PcsI WCGNNNNNNNCGW 1 cut(s) 1368
PdmI GAANNNNTTC 2 cut(s) 507, 970
PfeI GAWTC 1 cut(s) 1332
PflFI GACNNNGTC 1 cut(s) 596
PflMI CCANNNNNTGG 1 cut(s) 892
PkrI GCNGC 5 cut(s) 308, 496, 621, 1064, 1341
PleI GAGTC 2 cut(s) 387, 1421
PmaCI CACGTG 1 cut(s) 175
PmlI CACGTG 1 cut(s) 175
PpsI GAGTC 2 cut(s) 387, 1421
Ppu21I YACGTR 1 cut(s) 175
PscI ACATGT 1 cut(s) 400
PshAI GACNNNNGTC 1 cut(s) 403
Psp6I CCWGG 2 cut(s) 904, 1012
PspCI CACGTG 1 cut(s) 175
PspFI CCCAGC 1 cut(s) 1382
PspGI CCWGG 2 cut(s) 904, 1012
PspN4I GGNNCC 2 cut(s) 1047, 1219
PstNI CAGNNNCTG 3 cut(s) 85, 244, 306
PsuI RGATCY 6 cut(s) 34, 82, 97, 112, 1045, 1217
PsyI GACNNNGTC 1 cut(s) 596
PvuII CAGCTG 2 cut(s) 1160, 1382
RsaI GTAC 1 cut(s) 725
RsaNI GTAC 1 cut(s) 724
RseI CAYNNNNRTG 2 cut(s) 47, 1202
SaqAI TTAA 4 cut(s) 453, 561, 1184, 1208
SatI GCNGC 5 cut(s) 307, 495, 620, 1063, 1340
SchI GAGTC 2 cut(s) 388, 1421
ScrFI CCNGG 6 cut(s) 423, 813, 814, 906, 1014, 1351
SduI GDGCHC 2 cut(s) 950, 1137
SfaNI GCATC 3 cut(s) 33, 541, 655
SfcI CTRYAG 1 cut(s) 1227
SmaI CCCGGG 1 cut(s) 814
SmiMI CAYNNNNRTG 2 cut(s) 47, 1202
SmlI CTYRAG 2 cut(s) 940, 1127
SmoI CTYRAG 2 cut(s) 940, 1127
Sse9I AATT 7 cut(s) 67, 207, 288, 672, 887, 935, 1070
SsiI CCGC 1 cut(s) 1062
SspI AATATT 1 cut(s) 1213
SspMI CTAG 1 cut(s) 963
StyD4I CCNGG 6 cut(s) 421, 811, 812, 904, 1012, 1349
StyI CCWWGG 3 cut(s) 525, 1041, 1221
TaaI ACNGT 6 cut(s) 196, 226, 372, 507, 655, 1002
TaiI ACGT 2 cut(s) 177, 793
TaqI TCGA 5 cut(s) 53, 615, 1335, 1395, 1401
TasI AATT 7 cut(s) 67, 207, 288, 672, 887, 935, 1070
TatI WGTACW 1 cut(s) 723
TauI GCSGC 1 cut(s) 1065
TfiI GAWTC 1 cut(s) 1332
Tru1I TTAA 4 cut(s) 453, 561, 1184, 1208
Tru9I TTAA 4 cut(s) 453, 561, 1184, 1208
TscAI CASTG 1 cut(s) 346
TseFI GTSAC 3 cut(s) 170, 425, 1307
TseI GCWGC 4 cut(s) 306, 494, 619, 1339
Tsp45I GTSAC 3 cut(s) 170, 425, 1307
TspDTI ATGAA 2 cut(s) 74, 647
TspMI CCCGGG 1 cut(s) 812
TspRI CASTG 1 cut(s) 346
Tth111I GACNNNGTC 1 cut(s) 596
Van91I CCANNNNNTGG 1 cut(s) 892
VneI GTGCAC 2 cut(s) 946, 1133
XapI RAATTY 2 cut(s) 288, 935
XbaI TCTAGA 1 cut(s) 962
XceI RCATGY 1 cut(s) 404
XcmI CCANNNNNNNNNTGG 1 cut(s) 532
XmaI CCCGGG 1 cut(s) 812
XmnI GAANNNNTTC 2 cut(s) 507, 970
XspI CTAG 1 cut(s) 963
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.