Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009174.1

Orthogroup ID

OG0011467

Physical Location & Seq

Genomic Coordinates Reverse (-)

3494 .. 6132

Gene Structure 2639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009174.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

atgccaagatactcaaatctgcttttctgcatgatacagggtttgactgagcctgactatggaagtgatgcaagtgccttgaaaacaacagcgacaaaggtggaaggaggttggatgcttgacggccaaaagcgctggataggaaacgctacctttgctgatgtgttgattattttcgctaggaatacaacaacaaatcagatcaatggatatatagtaaacaagaatgtccctggactgaaagctacaaaaatagaaaataaaattggtttgcgcatggttcaaaatggagatattctcttaaagcaagtttttgtccctgatgaggacaggttacctggtgttacttcttttcaggataccaacaaggtacttgctgtttcccgtgttatggtttcctggcaacctattggtatatctatgggtgtctatgatatgtgccacaggtatctgaaggagaggaaacaatttggagcacccctagcagctttccaaatcaaccaagagaaacttgttcatatgctaggtaatgttcaagctatgatacttattggttggcgcctctgcaagttgtatgagacaggtaaaatgactccgggtcaggctagcatggggaagtcatggatcactgtgaaagcaagggaaactgttgctctagggagggaattgcttggcggcaatggaatcttatctgattttctagttgcaaaggctttctgtgatttggaacccatctacacctacgaaggcacctatgacatcaacagcctagtcacaggtagggaaatcactgggtttgccagcttcaaaccagctgcattgagcaaacgaagccgcctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003997 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009514 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016042 GO:0016054 GO:0016491 GO:0016627 GO:0016634 GO:0019395 GO:0019752 GO:0022414 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0034440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046459 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00071 ko00592 ko01040 ko01100 ko01110 ko01212 ko03320 ko04024 ko04146 map00071 map00592 map01040 map01100 map01110 map01212 map03320 map04024 map04146

Pfam Domains

Protein Families

Acyl-CoA_dh_1 Acyl-CoA_dh_M Acyl-CoA_dh_N

Protein Analysis

280

Amino Acids

31.07

Weight (kDa)

9.36

Isoelectric Point (pI)

28.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51840
fragaria_vesca	FvH4_6g11280 FvH4_6g11280
malus_domestica	MD04G1155700.v1.1 MD12G1169900.v1.1
prunus_persica	Prupe.6G279200_v2.0.a1
pyrus_communis	pycom04g14050 pycom12g16190 pycom12g16220
rosa_chinensis	RchiOBHm_Chr3g0462821
rosa_laevigata	RLG00000024830
rosa_multiflora	Rmu_sc0000766.1_g000008 Rmu_sc0009174.1_g000003
rosa_roxburghii	Rroxscaffold_6G00417180
rosa_rugosa	Rorug03G0059400
rosa_samantha	Rh3AG117500 Rh3BG121300 Rh3CG124200 Rh3DG122900
rosa_wichuraiana	Rw3G009960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	275
AccB1I	GGYRCC	2 cut(s)	558, 749
AciI	CCGC	2 cut(s)	675, 835
AclWI	GGATC	1 cut(s)	632
AcoI	YGGCCR	1 cut(s)	124
AcuI	CTGAAG	1 cut(s)	473
AcyI	GRCGYC	1 cut(s)	559
AfaI	GTAC	1 cut(s)	372
AfeI	AGCGCT	1 cut(s)	134
AfiI	CCNNNNNNNGG	3 cut(s)	59, 325, 391
AgsI	TTSAA	4 cut(s)	82, 284, 536, 808
AhdI	GACNNNNNGTC	1 cut(s)	597
AjnI	CCWGG	3 cut(s)	232, 337, 398
AjuI	GAANNNNNNNTTGG	2 cut(s)	249, 281
AluBI	AGCT	5 cut(s)	245, 488, 539, 804, 815
AluI	AGCT	5 cut(s)	245, 488, 539, 804, 815
Alw21I	GWGCWC	1 cut(s)	478
Alw26I	GTCTC	1 cut(s)	572
AlwI	GGATC	1 cut(s)	632
Aor51HI	AGCGCT	1 cut(s)	134
AoxI	GGCC	1 cut(s)	124
ApeKI	GCWGC	2 cut(s)	485, 815
AspLEI	GCGC	3 cut(s)	135, 276, 561
AsuC2I	CCSGG	1 cut(s)	597
AsuNHI	GCTAGC	1 cut(s)	605
BanI	GGYRCC	2 cut(s)	558, 749
Bbv12I	GWGCWC	1 cut(s)	478
BbvI	GCAGC	2 cut(s)	497, 802
BccI	CCATC	1 cut(s)	740
BceAI	ACGGC	1 cut(s)	139
BciT130I	CCWGG	3 cut(s)	234, 339, 400
BciVI	GTATCC	1 cut(s)	352
BcnI	CCSGG	1 cut(s)	597
BcoDI	GTCTC	1 cut(s)	572
BfaI	CTAG	7 cut(s)	180, 482, 524, 606, 656, 701, 770
BfmI	CTRYAG	1 cut(s)	839
BfoI	RGCGCY	2 cut(s)	136, 562
BfuI	GTATCC	1 cut(s)	352
BisI	GCNGC	4 cut(s)	486, 676, 816, 835
BlsI	GCNGC	4 cut(s)	487, 677, 817, 836
Bme1390I	CCNGG	4 cut(s)	234, 339, 400, 597
BmeRI	GACNNNNNGTC	1 cut(s)	597
BmiI	GGNNCC	3 cut(s)	560, 729, 751
BmrFI	CCNGG	4 cut(s)	234, 339, 400, 597
BmrI	ACTGGG	1 cut(s)	801
BmsI	GCATC	2 cut(s)	58, 105
BmtI	GCTAGC	1 cut(s)	609
BmuI	ACTGGG	1 cut(s)	801
BplI	GAGNNNNNCTC	2 cut(s)	282, 314
BpuMI	CCSGG	1 cut(s)	597
BsaHI	GRCGYC	1 cut(s)	559
BsaJI	CCNNGG	1 cut(s)	232
Bsc4I	CCNNNNNNNGG	3 cut(s)	59, 325, 391
Bse1I	ACTGG	1 cut(s)	796
Bse3DI	GCAATG	1 cut(s)	685
BseBI	CCWGG	3 cut(s)	234, 339, 400
BseDI	CCNNGG	1 cut(s)	232
BseGI	GGATG	1 cut(s)	120
BseLI	CCNNNNNNNGG	3 cut(s)	59, 325, 391
BseMI	GCAATG	1 cut(s)	685
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	1 cut(s)	796
BseXI	GCAGC	2 cut(s)	497, 802
BshFI	GGCC	1 cut(s)	126
BshNI	GGYRCC	2 cut(s)	558, 749
BsiHKAI	GWGCWC	1 cut(s)	478
BsiSI	CCGG	1 cut(s)	596
BslFI	GGGAC	2 cut(s)	215, 302
BslI	CCNNNNNNNGG	3 cut(s)	59, 325, 391
BsmAI	GTCTC	1 cut(s)	572
BsmFI	GGGAC	2 cut(s)	215, 302
BsnI	GGCC	1 cut(s)	126
Bsp1286I	GDGCHC	1 cut(s)	478
Bsp143I	GATC	2 cut(s)	201, 624
BspACI	CCGC	2 cut(s)	675, 835
BspANI	GGCC	1 cut(s)	126
BspCNI	CTCAG	1 cut(s)	40
BspLI	GGNNCC	3 cut(s)	560, 729, 751
BspOI	GCTAGC	1 cut(s)	609
BspPI	GGATC	1 cut(s)	632
BspT107I	GGYRCC	2 cut(s)	558, 749
BsrDI	GCAATG	1 cut(s)	685
BsrI	ACTGG	1 cut(s)	796
BssECI	CCNNGG	1 cut(s)	232
BssMI	GATC	2 cut(s)	201, 624
BssNI	GRCGYC	1 cut(s)	559
Bst2UI	CCWGG	3 cut(s)	234, 339, 400
Bst4CI	ACNGT	2 cut(s)	631, 649
BstACI	GRCGYC	1 cut(s)	559
BstC8I	GCNNGC	2 cut(s)	607, 802
BstDEI	CTNAG	1 cut(s)	48
BstEII	GGTNACC	1 cut(s)	333
BstF5I	GGATG	1 cut(s)	120
BstH2I	RGCGCY	2 cut(s)	136, 562
BstHHI	GCGC	3 cut(s)	135, 276, 561
BstKTI	GATC	2 cut(s)	204, 627
BstMAI	GTCTC	1 cut(s)	572
BstMBI	GATC	2 cut(s)	201, 624
BstMWI	GCNNNNNNNGC	4 cut(s)	132, 155, 482, 831
BstNI	CCWGG	3 cut(s)	234, 339, 400
BstPI	GGTNACC	1 cut(s)	333
BstSCI	CCNGG	4 cut(s)	232, 337, 398, 595
BstSFI	CTRYAG	1 cut(s)	839
BstV1I	GCAGC	2 cut(s)	497, 802
BsuI	GTATCC	1 cut(s)	352
BsuRI	GGCC	1 cut(s)	126
BtsCI	GGATG	1 cut(s)	120
BtsIMutI	CAGTG	2 cut(s)	627, 789
Cac8I	GCNNGC	2 cut(s)	607, 802
CfoI	GCGC	3 cut(s)	135, 276, 561
CsiI	ACCWGGT	1 cut(s)	337
Csp6I	GTAC	1 cut(s)	371
CviAII	CATG	4 cut(s)	31, 277, 610, 621
CviQI	GTAC	1 cut(s)	371
DdeI	CTNAG	1 cut(s)	48
DinI	GGCGCC	1 cut(s)	560
DpnI	GATC	2 cut(s)	203, 626
DpnII	GATC	2 cut(s)	201, 624
DriI	GACNNNNNGTC	1 cut(s)	597
EaeI	YGGCCR	1 cut(s)	124
Eam1105I	GACNNNNNGTC	1 cut(s)	597
Eco47III	AGCGCT	1 cut(s)	134
Eco57I	CTGAAG	1 cut(s)	473
Eco91I	GGTNACC	1 cut(s)	333
EcoO65I	GGTNACC	1 cut(s)	333
EcoRII	CCWGG	3 cut(s)	232, 337, 398
EgeI	GGCGCC	1 cut(s)	560
EheI	GGCGCC	1 cut(s)	560
FaeI	CATG	4 cut(s)	34, 280, 613, 624
FalI	AAGNNNNNCTT	2 cut(s)	495, 527
FaqI	GGGAC	2 cut(s)	215, 302
FatI	CATG	4 cut(s)	30, 276, 609, 620
FauNDI	CATATG	1 cut(s)	519
Fnu4HI	GCNGC	4 cut(s)	486, 676, 816, 835
FokI	GGATG	1 cut(s)	127
Fsp4HI	GCNGC	4 cut(s)	486, 676, 816, 835
FspBI	CTAG	7 cut(s)	180, 482, 524, 606, 656, 701, 770
FspI	TGCGCA	1 cut(s)	275
GlaI	GCGC	3 cut(s)	134, 275, 560
GluI	GCNGC	4 cut(s)	486, 676, 816, 835
HaeII	RGCGCY	2 cut(s)	136, 562
HaeIII	GGCC	1 cut(s)	126
HapII	CCGG	1 cut(s)	596
HhaI	GCGC	3 cut(s)	135, 276, 561
Hin1I	GRCGYC	1 cut(s)	559
Hin1II	CATG	4 cut(s)	34, 280, 613, 624
Hin6I	GCGC	3 cut(s)	133, 274, 559
HinP1I	GCGC	3 cut(s)	133, 274, 559
HinfI	GANTC	2 cut(s)	592, 684
HpaII	CCGG	1 cut(s)	596
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	3 cut(s)	201, 453, 694
Hpy188III	TCNNGA	1 cut(s)	356
Hpy8I	GTNNAC	1 cut(s)	220
HpyAV	CCTTC	3 cut(s)	98, 448, 740
HpyCH4III	ACNGT	2 cut(s)	631, 649
HpyCH4V	TGCA	5 cut(s)	30, 71, 567, 707, 818
HpyF10VI	GCNNNNNNNGC	4 cut(s)	132, 155, 482, 831
HpyF3I	CTNAG	1 cut(s)	48
Hsp92I	GRCGYC	1 cut(s)	559
Hsp92II	CATG	4 cut(s)	34, 280, 613, 624
HspAI	GCGC	3 cut(s)	133, 274, 559
KasI	GGCGCC	1 cut(s)	558
Kzo9I	GATC	2 cut(s)	201, 624
LmnI	GCTCC	1 cut(s)	473
Lsp1109I	GCAGC	2 cut(s)	497, 802
LweI	GCATC	2 cut(s)	58, 105
MabI	ACCWGGT	1 cut(s)	337
MaeI	CTAG	7 cut(s)	180, 482, 524, 606, 656, 701, 770
MaeIII	GTNAC	3 cut(s)	333, 343, 772
MalI	GATC	2 cut(s)	203, 626
MboI	GATC	2 cut(s)	201, 624
MhlI	GDGCHC	1 cut(s)	478
MluCI	AATT	3 cut(s)	264, 467, 665
Mly113I	GGCGCC	1 cut(s)	559
MlyI	GAGTC	1 cut(s)	586
MmeI	TCCRAC	1 cut(s)	92
MnlI	CCTC	5 cut(s)	101, 319, 453, 572, 654
MseI	TTAA	1 cut(s)	302
MspA1I	CMGCKG	1 cut(s)	815
MspI	CCGG	1 cut(s)	596
MspR9I	CCNGG	4 cut(s)	234, 339, 400, 597
MvaI	CCWGG	3 cut(s)	234, 339, 400
MwoI	GCNNNNNNNGC	4 cut(s)	132, 155, 482, 831
NarI	GGCGCC	1 cut(s)	559
NciI	CCSGG	1 cut(s)	597
NdeI	CATATG	1 cut(s)	519
NdeII	GATC	2 cut(s)	201, 624
NheI	GCTAGC	1 cut(s)	605
NlaIII	CATG	4 cut(s)	34, 280, 613, 624
NlaIV	GGNNCC	3 cut(s)	560, 729, 751
NmuCI	GTSAC	1 cut(s)	772
NsbI	TGCGCA	1 cut(s)	275
PfeI	GAWTC	1 cut(s)	684
PkrI	GCNGC	4 cut(s)	487, 677, 817, 836
PleI	GAGTC	1 cut(s)	586
PluTI	GGCGCC	1 cut(s)	562
PpsI	GAGTC	1 cut(s)	586
Psp6I	CCWGG	3 cut(s)	232, 337, 398
PspEI	GGTNACC	1 cut(s)	333
PspGI	CCWGG	3 cut(s)	232, 337, 398
PspN4I	GGNNCC	3 cut(s)	560, 729, 751
PvuII	CAGCTG	1 cut(s)	815
RsaI	GTAC	1 cut(s)	372
RsaNI	GTAC	1 cut(s)	371
SaqAI	TTAA	1 cut(s)	302
SatI	GCNGC	4 cut(s)	486, 676, 816, 835
Sau3AI	GATC	2 cut(s)	201, 624
SchI	GAGTC	1 cut(s)	586
ScrFI	CCNGG	4 cut(s)	234, 339, 400, 597
SduI	GDGCHC	1 cut(s)	478
SexAI	ACCWGGT	1 cut(s)	337
SfaNI	GCATC	2 cut(s)	58, 105
SfcI	CTRYAG	1 cut(s)	839
SfoI	GGCGCC	1 cut(s)	560
Sse9I	AATT	3 cut(s)	264, 467, 665
SsiI	CCGC	2 cut(s)	675, 835
SspDI	GGCGCC	1 cut(s)	558
SspMI	CTAG	7 cut(s)	180, 482, 524, 606, 656, 701, 770
StyD4I	CCNGG	4 cut(s)	232, 337, 398, 595
TaaI	ACNGT	2 cut(s)	631, 649
TasI	AATT	3 cut(s)	264, 467, 665
TauI	GCSGC	2 cut(s)	678, 837
TfiI	GAWTC	1 cut(s)	684
Tru1I	TTAA	1 cut(s)	302
Tru9I	TTAA	1 cut(s)	302
TscAI	CASTG	2 cut(s)	634, 796
TseFI	GTSAC	1 cut(s)	772
TseI	GCWGC	2 cut(s)	485, 815
Tsp45I	GTSAC	1 cut(s)	772
TspDTI	ATGAA	1 cut(s)	506
TspRI	CASTG	2 cut(s)	634, 796
XspI	CTAG	7 cut(s)	180, 482, 524, 606, 656, 701, 770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.