Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0011467

Physical Location & Seq

Genomic Coordinates Reverse (-)

9973460 .. 9977789

Gene Structure 4330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG121300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGATCACTACTGCAGATGATGCTAACAAAGCGAGGACTACTTATTTCAATTTACCTGCGTTGGATGTCTCCCTTGCTTTCCCCCAAGCAACTCCGGCGGCTATATTTCCTCCCTGCACTTCCGACTATTATCAATTTAATGACCTATTGACGCCTGAGGAGCAGGCTCTCAGGATGAGAGTAAGACAGTCTGTAGAGAAAGAAGTAGCTCCAATCATGGCGGAGTATTGGGAGAAGGCAGCGTTTCCATTCCATATTATTCCCAAGCTTGGTGCCTTGCAAATTGCTGGGGGCACAATCAAGGGTTATGGGTGTCCCGGTCTTTCTATTACAGCAAGTGCTATTGCTACAGCAGAAGTTGCTAGAGTTGATGCTAGCTGTTCTACTTTCATCCTAGTTCATTCATCACTAGCAATGCTCACTATTGCATTATGTGGATCAGAGGCTCAAAAGCAGAAATATTTACCGTCTTTGGCTGAGTTAAAAACCGTAGCCTGTTGGGGTTTGACTGAGCCTGACTATGGAAGTGATGCAAGTGCCTTGAAAACAACAGCGACAAAGGTGGAAGGAGGTTGGATGCTTGACGGCCAAAAGCGCTGGATAGGAAACGCTACCTTTGCTGATGTGTTGATTATTTTCGCTAGGAATACAACAACAAATCAGATCAATGGATATATAGTAAACAAGAATGTCCCTGGACTGAAAGCTACAAAAATAGAAAATAAAATTGGTTTGCGCATGGTTCAAAATGGAGATATTCTCTTAAAGCAAGTTTTTGTCCCTGATGAGGACAGGTTACCTGGTGTTACTTCTTTTCAGGATACCAACAAGGTACTTGCTGTTTCCCGTGTTATGGTTTCCTGGCAACCTATTGGTATATCTATGGGTGTCTATGATATGTGCCACAGGTATCTGAAGGAGAGGAAACAATTTGGAGCACCCCTAGCAGCTTTCCAAATCAACCAAGAGAAACTTGTTCATATGCTAGGTAATGTTCAAGCTATGATACTTATTGGTTGGCGCCTCTGCAAGTTGTATGAGGCAGGTAAAATGACTCCGGGTCAGGCTAGCATGGGGAAGTCATGGATCACTGTGAAAGCAAGGGAAACTGTTGCTCTAGGGAGGGAATTGCTTGGCGGCAATGGAATCTTATCTGATTTTCTAGTTGCAAAGGCTTTCTGTGATTTGGAACCCATCTACACCTACGAAGGCACCTATGACATCAACAGCCTAGTCACAGGTAGGGAAATCACTGGGTTTGCCAGCTTCAAACCAGCTGCATTGAGCAAACGAAGCCGCCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003997 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009514 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016042 GO:0016054 GO:0016491 GO:0016627 GO:0016634 GO:0019395 GO:0019752 GO:0022414 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0034440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046459 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00071 ko00592 ko01040 ko01100 ko01110 ko01212 ko03320 ko04024 ko04146 map00071 map00592 map01040 map01100 map01110 map01212 map03320 map04024 map04146

Pfam Domains

Protein Families

Acyl-CoA_dh_1 Acyl-CoA_dh_M Acyl-CoA_dh_N

Protein Analysis

434

Amino Acids

47.47

Weight (kDa)

8.74

Isoelectric Point (pI)

35.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyl-CoA_dh_N	PF02771	51 - 160	2.2e-28	Acyl-CoA dehydrogenase, N-terminal domain
Acyl-CoA_dh_M	PF02770	166 - 258	3.8e-21	Acyl-CoA dehydrogenase, middle domain
Acyl-CoA_dh_1	PF00441	276 - 415	3.3e-24	Acyl-CoA dehydrogenase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51840
fragaria_vesca	FvH4_6g11280 FvH4_6g11280
malus_domestica	MD04G1155700.v1.1 MD12G1169900.v1.1
prunus_persica	Prupe.6G279200_v2.0.a1
pyrus_communis	pycom04g14050 pycom12g16190 pycom12g16220
rosa_chinensis	RchiOBHm_Chr3g0462821
rosa_laevigata	RLG00000024830
rosa_multiflora	Rmu_sc0000766.1_g000008 Rmu_sc0009174.1_g000003
rosa_roxburghii	Rroxscaffold_6G00417180
rosa_rugosa	Rorug03G0059400
rosa_samantha	Rh3AG117500 Rh3BG121300 Rh3CG124200 Rh3DG122900
rosa_wichuraiana	Rw3G009960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	737
Acc36I	ACCTGC	2 cut(s)	64, 1034
AccB1I	GGYRCC	3 cut(s)	272, 1020, 1211
AciI	CCGC	4 cut(s)	98, 221, 1137, 1297
AclWI	GGATC	2 cut(s)	445, 1094
AcoI	YGGCCR	1 cut(s)	586
AcuI	CTGAAG	1 cut(s)	935
AcyI	GRCGYC	2 cut(s)	152, 1021
AfaI	GTAC	1 cut(s)	834
AfeI	AGCGCT	1 cut(s)	596
AfiI	CCNNNNNNNGG	4 cut(s)	269, 521, 787, 853
AgsI	TTSAA	5 cut(s)	49, 544, 746, 998, 1270
AhdI	GACNNNNNGTC	1 cut(s)	1059
AjnI	CCWGG	3 cut(s)	694, 799, 860
AjuI	GAANNNNNNNTTGG	2 cut(s)	711, 743
AluBI	AGCT	8 cut(s)	209, 268, 378, 707, 950, 1001, 1266, 1277
AluI	AGCT	8 cut(s)	209, 268, 378, 707, 950, 1001, 1266, 1277
Alw21I	GWGCWC	1 cut(s)	940
Alw26I	GTCTC	1 cut(s)	73
AlwI	GGATC	2 cut(s)	445, 1094
Aor51HI	AGCGCT	1 cut(s)	596
AoxI	GGCC	1 cut(s)	586
ApeKI	GCWGC	3 cut(s)	239, 947, 1277
AspLEI	GCGC	3 cut(s)	597, 738, 1023
AsuC2I	CCSGG	2 cut(s)	318, 1059
AsuNHI	GCTAGC	2 cut(s)	374, 1067
AxyI	CCTNAGG	1 cut(s)	156
BaeGI	GKGCMC	1 cut(s)	296
BanI	GGYRCC	3 cut(s)	272, 1020, 1211
Bbv12I	GWGCWC	1 cut(s)	940
BbvI	GCAGC	3 cut(s)	251, 959, 1264
BccI	CCATC	1 cut(s)	1202
BceAI	ACGGC	1 cut(s)	601
BciT130I	CCWGG	3 cut(s)	696, 801, 862
BciVI	GTATCC	1 cut(s)	814
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	2 cut(s)	318, 1059
BcoDI	GTCTC	1 cut(s)	73
BfmI	CTRYAG	4 cut(s)	12, 192, 348, 1301
BfoI	RGCGCY	2 cut(s)	598, 1024
BfuAI	ACCTGC	2 cut(s)	64, 1034
BfuI	GTATCC	1 cut(s)	814
BisI	GCNGC	6 cut(s)	99, 240, 948, 1138, 1278, 1297
BlsI	GCNGC	6 cut(s)	100, 241, 949, 1139, 1279, 1298
Bme1390I	CCNGG	5 cut(s)	318, 696, 801, 862, 1059
BmeRI	GACNNNNNGTC	1 cut(s)	1059
BmiI	GGNNCC	4 cut(s)	274, 1022, 1191, 1213
BmrFI	CCNGG	5 cut(s)	318, 696, 801, 862, 1059
BmrI	ACTGGG	1 cut(s)	1263
BmsI	GCATC	4 cut(s)	10, 361, 520, 567
BmtI	GCTAGC	2 cut(s)	378, 1071
BmuI	ACTGGG	1 cut(s)	1263
BplI	GAGNNNNNCTC	2 cut(s)	744, 776
BpuMI	CCSGG	2 cut(s)	318, 1059
BsaHI	GRCGYC	2 cut(s)	152, 1021
BsaJI	CCNNGG	1 cut(s)	694
Bsc4I	CCNNNNNNNGG	4 cut(s)	269, 521, 787, 853
Bse1I	ACTGG	1 cut(s)	1258
Bse21I	CCTNAGG	1 cut(s)	156
Bse3DI	GCAATG	2 cut(s)	420, 1147
BseBI	CCWGG	3 cut(s)	696, 801, 862
BseDI	CCNNGG	1 cut(s)	694
BseGI	GGATG	4 cut(s)	70, 180, 390, 582
BseLI	CCNNNNNNNGG	4 cut(s)	269, 521, 787, 853
BseMI	GCAATG	2 cut(s)	420, 1147
BseMII	CTCAG	4 cut(s)	147, 184, 468, 501
BseNI	ACTGG	1 cut(s)	1258
BseRI	GAGGAG	1 cut(s)	173
BseSI	GKGCMC	1 cut(s)	296
BseXI	GCAGC	3 cut(s)	251, 959, 1264
BseYI	CCCAGC	1 cut(s)	287
BsgI	GTGCAG	1 cut(s)	100
BshFI	GGCC	1 cut(s)	588
BshNI	GGYRCC	3 cut(s)	272, 1020, 1211
BsiHKAI	GWGCWC	1 cut(s)	940
BsiSI	CCGG	3 cut(s)	95, 318, 1058
BslFI	GGGAC	3 cut(s)	300, 677, 764
BslI	CCNNNNNNNGG	4 cut(s)	269, 521, 787, 853
BsmAI	GTCTC	1 cut(s)	73
BsmFI	GGGAC	3 cut(s)	300, 677, 764
BsnI	GGCC	1 cut(s)	588
Bsp1286I	GDGCHC	2 cut(s)	296, 940
Bsp143I	GATC	4 cut(s)	3, 437, 663, 1086
BspACI	CCGC	4 cut(s)	98, 221, 1137, 1297
BspANI	GGCC	1 cut(s)	588
BspCNI	CTCAG	4 cut(s)	148, 183, 469, 502
BspLI	GGNNCC	4 cut(s)	274, 1022, 1191, 1213
BspMAI	CTGCAG	1 cut(s)	16
BspMI	ACCTGC	2 cut(s)	64, 1034
BspOI	GCTAGC	2 cut(s)	378, 1071
BspPI	GGATC	2 cut(s)	445, 1094
BspT107I	GGYRCC	3 cut(s)	272, 1020, 1211
BsrDI	GCAATG	2 cut(s)	420, 1147
BsrI	ACTGG	1 cut(s)	1258
BssECI	CCNNGG	1 cut(s)	694
BssMI	GATC	4 cut(s)	3, 437, 663, 1086
BssNI	GRCGYC	2 cut(s)	152, 1021
Bst2UI	CCWGG	3 cut(s)	696, 801, 862
Bst4CI	ACNGT	5 cut(s)	189, 468, 490, 1093, 1111
BstACI	GRCGYC	2 cut(s)	152, 1021
BstAPI	GCANNNNNTGC	2 cut(s)	20, 359
BstC8I	GCNNGC	4 cut(s)	165, 376, 1069, 1264
BstDEI	CTNAG	4 cut(s)	156, 170, 477, 510
BstEII	GGTNACC	1 cut(s)	795
BstF5I	GGATG	4 cut(s)	70, 180, 390, 582
BstH2I	RGCGCY	2 cut(s)	598, 1024
BstHHI	GCGC	3 cut(s)	597, 738, 1023
BstKTI	GATC	4 cut(s)	6, 440, 666, 1089
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	4 cut(s)	3, 437, 663, 1086
BstMWI	GCNNNNNNNGC	9 cut(s)	20, 29, 95, 160, 359, 594, 617, 944, 1293
BstNI	CCWGG	3 cut(s)	696, 801, 862
BstPI	GGTNACC	1 cut(s)	795
BstSCI	CCNGG	5 cut(s)	316, 694, 799, 860, 1057
BstSFI	CTRYAG	4 cut(s)	12, 192, 348, 1301
BstSLI	GKGCMC	1 cut(s)	296
BstV1I	GCAGC	3 cut(s)	251, 959, 1264
Bsu36I	CCTNAGG	1 cut(s)	156
BsuI	GTATCC	1 cut(s)	814
BsuRI	GGCC	1 cut(s)	588
BtsCI	GGATG	4 cut(s)	70, 180, 390, 582
BtsIMutI	CAGTG	2 cut(s)	1089, 1251
BveI	ACCTGC	2 cut(s)	64, 1034
Cac8I	GCNNGC	4 cut(s)	165, 376, 1069, 1264
CfoI	GCGC	3 cut(s)	597, 738, 1023
CseI	GACGC	1 cut(s)	160
CsiI	ACCWGGT	1 cut(s)	799
Csp6I	GTAC	1 cut(s)	833
CviAII	CATG	4 cut(s)	217, 739, 1072, 1083
CviQI	GTAC	1 cut(s)	833
DdeI	CTNAG	4 cut(s)	156, 170, 477, 510
DinI	GGCGCC	1 cut(s)	1022
DpnI	GATC	4 cut(s)	5, 439, 665, 1088
DpnII	GATC	4 cut(s)	3, 437, 663, 1086
DriI	GACNNNNNGTC	1 cut(s)	1059
EaeI	YGGCCR	1 cut(s)	586
Eam1105I	GACNNNNNGTC	1 cut(s)	1059
EciI	GGCGGA	1 cut(s)	236
Eco47III	AGCGCT	1 cut(s)	596
Eco57I	CTGAAG	1 cut(s)	935
Eco81I	CCTNAGG	1 cut(s)	156
Eco91I	GGTNACC	1 cut(s)	795
EcoO65I	GGTNACC	1 cut(s)	795
EcoRII	CCWGG	3 cut(s)	694, 799, 860
EgeI	GGCGCC	1 cut(s)	1022
EheI	GGCGCC	1 cut(s)	1022
FaeI	CATG	4 cut(s)	220, 742, 1075, 1086
FalI	AAGNNNNNCTT	2 cut(s)	957, 989
FaqI	GGGAC	3 cut(s)	300, 677, 764
FatI	CATG	4 cut(s)	216, 738, 1071, 1082
FauNDI	CATATG	1 cut(s)	981
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	6 cut(s)	99, 240, 948, 1138, 1278, 1297
FokI	GGATG	4 cut(s)	77, 187, 377, 589
Fsp4HI	GCNGC	6 cut(s)	99, 240, 948, 1138, 1278, 1297
FspI	TGCGCA	1 cut(s)	737
GlaI	GCGC	3 cut(s)	596, 737, 1022
GluI	GCNGC	6 cut(s)	99, 240, 948, 1138, 1278, 1297
GsaI	CCCAGC	1 cut(s)	291
HaeII	RGCGCY	2 cut(s)	598, 1024
HaeIII	GGCC	1 cut(s)	588
HapII	CCGG	3 cut(s)	95, 318, 1058
HgaI	GACGC	1 cut(s)	160
HhaI	GCGC	3 cut(s)	597, 738, 1023
Hin1I	GRCGYC	2 cut(s)	152, 1021
Hin1II	CATG	4 cut(s)	220, 742, 1075, 1086
Hin6I	GCGC	3 cut(s)	595, 736, 1021
HinP1I	GCGC	3 cut(s)	595, 736, 1021
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	2 cut(s)	1054, 1146
HpaII	CCGG	3 cut(s)	95, 318, 1058
Hpy166II	GTNNAC	1 cut(s)	682
Hpy188I	TCNGA	5 cut(s)	124, 442, 663, 915, 1156
Hpy188III	TCNNGA	2 cut(s)	172, 818
Hpy8I	GTNNAC	1 cut(s)	682
HpyAV	CCTTC	4 cut(s)	229, 560, 910, 1202
HpyCH4III	ACNGT	5 cut(s)	189, 468, 490, 1093, 1111
HpyCH4V	TGCA	8 cut(s)	14, 117, 280, 428, 533, 1029, 1169, 1280
HpyF10VI	GCNNNNNNNGC	9 cut(s)	20, 29, 95, 160, 359, 594, 617, 944, 1293
HpyF3I	CTNAG	4 cut(s)	156, 170, 477, 510
Hsp92I	GRCGYC	2 cut(s)	152, 1021
Hsp92II	CATG	4 cut(s)	220, 742, 1075, 1086
HspAI	GCGC	3 cut(s)	595, 736, 1021
KasI	GGCGCC	1 cut(s)	1020
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	4 cut(s)	3, 437, 663, 1086
LmnI	GCTCC	3 cut(s)	160, 214, 935
Lsp1109I	GCAGC	3 cut(s)	251, 959, 1264
LweI	GCATC	4 cut(s)	10, 361, 520, 567
MabI	ACCWGGT	1 cut(s)	799
MaeIII	GTNAC	3 cut(s)	795, 805, 1234
MalI	GATC	4 cut(s)	5, 439, 665, 1088
MboI	GATC	4 cut(s)	3, 437, 663, 1086
MhlI	GDGCHC	2 cut(s)	296, 940
MluCI	AATT	6 cut(s)	49, 134, 282, 726, 929, 1127
Mly113I	GGCGCC	1 cut(s)	1021
MlyI	GAGTC	1 cut(s)	1048
MmeI	TCCRAC	3 cut(s)	42, 147, 554
MseI	TTAA	3 cut(s)	138, 482, 764
MspA1I	CMGCKG	1 cut(s)	1277
MspI	CCGG	3 cut(s)	95, 318, 1058
MspR9I	CCNGG	5 cut(s)	318, 696, 801, 862, 1059
MvaI	CCWGG	3 cut(s)	696, 801, 862
MwoI	GCNNNNNNNGC	9 cut(s)	20, 29, 95, 160, 359, 594, 617, 944, 1293
NarI	GGCGCC	1 cut(s)	1021
NciI	CCSGG	2 cut(s)	318, 1059
NdeI	CATATG	1 cut(s)	981
NdeII	GATC	4 cut(s)	3, 437, 663, 1086
NheI	GCTAGC	2 cut(s)	374, 1067
NlaIII	CATG	4 cut(s)	220, 742, 1075, 1086
NlaIV	GGNNCC	4 cut(s)	274, 1022, 1191, 1213
NmuCI	GTSAC	1 cut(s)	1234
NsbI	TGCGCA	1 cut(s)	737
PfeI	GAWTC	1 cut(s)	1146
PkrI	GCNGC	6 cut(s)	100, 241, 949, 1139, 1279, 1298
PleI	GAGTC	1 cut(s)	1048
PluTI	GGCGCC	1 cut(s)	1024
PpsI	GAGTC	1 cut(s)	1048
Psp6I	CCWGG	3 cut(s)	694, 799, 860
PspEI	GGTNACC	1 cut(s)	795
PspFI	CCCAGC	1 cut(s)	287
PspGI	CCWGG	3 cut(s)	694, 799, 860
PspN4I	GGNNCC	4 cut(s)	274, 1022, 1191, 1213
PstI	CTGCAG	1 cut(s)	16
PvuII	CAGCTG	1 cut(s)	1277
RsaI	GTAC	1 cut(s)	834
RsaNI	GTAC	1 cut(s)	833
SaqAI	TTAA	3 cut(s)	138, 482, 764
SatI	GCNGC	6 cut(s)	99, 240, 948, 1138, 1278, 1297
Sau3AI	GATC	4 cut(s)	3, 437, 663, 1086
SchI	GAGTC	1 cut(s)	1048
ScrFI	CCNGG	5 cut(s)	318, 696, 801, 862, 1059
SduI	GDGCHC	2 cut(s)	296, 940
SexAI	ACCWGGT	1 cut(s)	799
SfaNI	GCATC	4 cut(s)	10, 361, 520, 567
SfcI	CTRYAG	4 cut(s)	12, 192, 348, 1301
SfoI	GGCGCC	1 cut(s)	1022
Sse9I	AATT	6 cut(s)	49, 134, 282, 726, 929, 1127
SsiI	CCGC	4 cut(s)	98, 221, 1137, 1297
SspDI	GGCGCC	1 cut(s)	1020
SspI	AATATT	1 cut(s)	461
StyD4I	CCNGG	5 cut(s)	316, 694, 799, 860, 1057
TaaI	ACNGT	5 cut(s)	189, 468, 490, 1093, 1111
TasI	AATT	6 cut(s)	49, 134, 282, 726, 929, 1127
TauI	GCSGC	3 cut(s)	101, 1140, 1299
TfiI	GAWTC	1 cut(s)	1146
Tru1I	TTAA	3 cut(s)	138, 482, 764
Tru9I	TTAA	3 cut(s)	138, 482, 764
TscAI	CASTG	2 cut(s)	1096, 1258
TseFI	GTSAC	1 cut(s)	1234
TseI	GCWGC	3 cut(s)	239, 947, 1277
Tsp45I	GTSAC	1 cut(s)	1234
TspDTI	ATGAA	4 cut(s)	379, 389, 393, 968
TspRI	CASTG	2 cut(s)	1096, 1258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.