Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0011467

Physical Location & Seq

Genomic Coordinates Forward (+)

39490001 .. 39494020

Gene Structure 4020 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024830

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGACAATACCTCCAAATCAAGATGATGCTAACAAAGCGAGGACTACTTATTTCAATTTACCTGCATTGGATGTCTCCCTTGCTTTCCCCCAAGCAACTCCGGCGGCTATATTTCCTCCCTGCACTTCCGACTATTATCAATCTAATGACCTATTGACGCCTGAGGAGCAGGCTCTCAGGATGAAAGTAAGACAGTCTGTAGAGAAAGAAGTAGCTCCAATCATGGCGGAGTATTGGGAGAAGGCAGCGTTTCCATTCCATATTATTCCAAAGCTTGGTGCCTTGCGGATTGCTGGGGGCACAATCAAGGGTTATGGGTGTCCCGGTCTTTCTATTACAGCAAGTGCTATTGCTACAGCAGAAGTTGCTAGAGTCGATGCTAGCTGTTCTACTTTCATCCTAGTTCATTCATCACTAGCAATGCTCACTATTGCATTATGTGGATCAGAAGCTCAAAAGCAGAAATATTTACCGTCTTTGGCTGAGTTAAAAACCGTAGCCTGTTGGGCTTTGACTGAGCCTGACTATGGAAGTGATGCAAGTGCCTTGAAAACAACAGCGACAAAGGTGGAAGGAGGTTGGATGCTTGACGGCCAAAAGCGCTGGATAGGAAACGCTACCTTTGCTGATGTGTTGATTATTTTTGCTAGGAATACAACAACAAATCAGATCAATGGATATATAGTAAACAAGAATGTCCCTGGACTGAAAGCTACAAAAATAGAAAATAAAATTGGTTTGCGCATGGTTCAAAATGGAGATATTCTCTTAAAGCAAGTTTTTGTCCCTGATGAGGACAGCTTACCTGGTGTAACTTCTTTTCAGGATACCAACAAGGTACTTGCTGTTTCCCGTGTTATGGTTTGCTGGCAACCTATTGGTATATCTATGGGTGTCTATGATATGTGCCACAGGTATCTGAAGGAGAGGAAACAATTTGGAGCACCCCTAGCAGCTTTCCAAATCAACCAAGAGAAACTTGTTCATATGCTGGGTAATGTTCAAGCTATGATACTTATTGGTTGGCGGCTCTGCAAGTTGTATGAGACAGGTAAAATGACTCCGGGTCAGGCTAGCATGGGGAAGTCATGGATCACTGTGAAAGCAAGGGAAACTGTTGCTTTAGGGAGGGAATTGCTTGGCGGCAATGGAATCTTATCCGATTTTCTAGTTGCAAAGGCTTTCTGTGATTTGGAACCCATCTACACCTACGAAGGCACCTATGACATCAACAGCCTAGTCACAGGTAGGGAAATCACTGGGTTTGCCAGCTTTAAACCAGCTGCATTGAGCAAACGAAGCCGCCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003997 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009514 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016042 GO:0016054 GO:0016491 GO:0016627 GO:0016634 GO:0019395 GO:0019752 GO:0022414 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0034440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046459 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00071 ko00592 ko01040 ko01100 ko01110 ko01212 ko03320 ko04024 ko04146 map00071 map00592 map01040 map01100 map01110 map01212 map03320 map04024 map04146

Pfam Domains

Protein Families

Acyl-CoA_dh_1 Acyl-CoA_dh_M Acyl-CoA_dh_N

Protein Analysis

437

Amino Acids

47.67

Weight (kDa)

8.7

Isoelectric Point (pI)

37.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyl-CoA_dh_N	PF02771	53 - 162	2.8e-28	Acyl-CoA dehydrogenase, N-terminal domain
Acyl-CoA_dh_M	PF02770	168 - 260	2.1e-21	Acyl-CoA dehydrogenase, middle domain
Acyl-CoA_dh_1	PF00441	278 - 417	1.7e-24	Acyl-CoA dehydrogenase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51840
fragaria_vesca	FvH4_6g11280 FvH4_6g11280
malus_domestica	MD04G1155700.v1.1 MD12G1169900.v1.1
prunus_persica	Prupe.6G279200_v2.0.a1
pyrus_communis	pycom04g14050 pycom12g16190 pycom12g16220
rosa_chinensis	RchiOBHm_Chr3g0462821
rosa_laevigata	RLG00000024830
rosa_multiflora	Rmu_sc0000766.1_g000008 Rmu_sc0009174.1_g000003
rosa_roxburghii	Rroxscaffold_6G00417180
rosa_rugosa	Rorug03G0059400
rosa_samantha	Rh3AG117500 Rh3BG121300 Rh3CG124200 Rh3DG122900
rosa_wichuraiana	Rw3G009960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	743
Acc36I	ACCTGC	1 cut(s)	70
AccB1I	GGYRCC	2 cut(s)	278, 1217
AccB7I	CCANNNNNTGG	1 cut(s)	275
AciI	CCGC	6 cut(s)	104, 227, 286, 1027, 1143, 1303
AclWI	GGATC	2 cut(s)	451, 1100
AcoI	YGGCCR	1 cut(s)	592
AcuI	CTGAAG	1 cut(s)	941
AcyI	GRCGYC	1 cut(s)	158
AfaI	GTAC	1 cut(s)	840
AfeI	AGCGCT	1 cut(s)	602
AfiI	CCNNNNNNNGG	4 cut(s)	275, 527, 793, 859
AgsI	TTSAA	4 cut(s)	55, 550, 752, 1004
AhdI	GACNNNNNGTC	1 cut(s)	1065
AjnI	CCWGG	2 cut(s)	700, 805
AjuI	GAANNNNNNNTTGG	2 cut(s)	717, 749
Alw21I	GWGCWC	1 cut(s)	946
Alw26I	GTCTC	2 cut(s)	79, 1040
AlwI	GGATC	2 cut(s)	451, 1100
Aor51HI	AGCGCT	1 cut(s)	602
AoxI	GGCC	1 cut(s)	592
ApeKI	GCWGC	3 cut(s)	245, 953, 1283
AspLEI	GCGC	2 cut(s)	603, 744
AsuC2I	CCSGG	2 cut(s)	324, 1065
AsuNHI	GCTAGC	2 cut(s)	380, 1073
AxyI	CCTNAGG	1 cut(s)	162
BaeGI	GKGCMC	1 cut(s)	302
BanI	GGYRCC	2 cut(s)	278, 1217
Bbv12I	GWGCWC	1 cut(s)	946
BbvI	GCAGC	3 cut(s)	257, 965, 1270
BccI	CCATC	1 cut(s)	1208
BceAI	ACGGC	1 cut(s)	607
BciT130I	CCWGG	2 cut(s)	702, 807
BciVI	GTATCC	1 cut(s)	820
BcnI	CCSGG	2 cut(s)	324, 1065
BcoDI	GTCTC	2 cut(s)	79, 1040
BfaI	CTAG	9 cut(s)	369, 381, 401, 416, 648, 950, 1074, 1169, 1238
BfmI	CTRYAG	3 cut(s)	198, 354, 1307
BfoI	RGCGCY	1 cut(s)	604
BfuAI	ACCTGC	1 cut(s)	70
BfuI	GTATCC	1 cut(s)	820
BglI	GCCNNNNNGGC	1 cut(s)	506
BisI	GCNGC	7 cut(s)	105, 246, 954, 1028, 1144, 1284, 1303
BlsI	GCNGC	7 cut(s)	106, 247, 955, 1029, 1145, 1285, 1304
Bme1390I	CCNGG	4 cut(s)	324, 702, 807, 1065
BmeRI	GACNNNNNGTC	1 cut(s)	1065
BmiI	GGNNCC	3 cut(s)	280, 1197, 1219
BmrFI	CCNGG	4 cut(s)	324, 702, 807, 1065
BmrI	ACTGGG	1 cut(s)	1269
BmsI	GCATC	4 cut(s)	16, 367, 526, 573
BmtI	GCTAGC	2 cut(s)	384, 1077
BmuI	ACTGGG	1 cut(s)	1269
BplI	GAGNNNNNCTC	2 cut(s)	750, 782
BpuMI	CCSGG	2 cut(s)	324, 1065
BsaHI	GRCGYC	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	700
BsaXI	ACNNNNNCTCC	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	4 cut(s)	275, 527, 793, 859
Bse1I	ACTGG	1 cut(s)	1264
Bse21I	CCTNAGG	1 cut(s)	162
Bse3DI	GCAATG	2 cut(s)	426, 1153
BseBI	CCWGG	2 cut(s)	702, 807
BseDI	CCNNGG	1 cut(s)	700
BseGI	GGATG	4 cut(s)	76, 186, 396, 588
BseLI	CCNNNNNNNGG	4 cut(s)	275, 527, 793, 859
BseMI	GCAATG	2 cut(s)	426, 1153
BseMII	CTCAG	4 cut(s)	153, 190, 474, 507
BseNI	ACTGG	1 cut(s)	1264
BseRI	GAGGAG	1 cut(s)	179
BseSI	GKGCMC	1 cut(s)	302
BseXI	GCAGC	3 cut(s)	257, 965, 1270
BseYI	CCCAGC	2 cut(s)	293, 991
BsgI	GTGCAG	1 cut(s)	106
BshFI	GGCC	1 cut(s)	594
BshNI	GGYRCC	2 cut(s)	278, 1217
BsiHKAI	GWGCWC	1 cut(s)	946
BsiSI	CCGG	3 cut(s)	101, 324, 1064
BslFI	GGGAC	3 cut(s)	306, 683, 770
BslI	CCNNNNNNNGG	4 cut(s)	275, 527, 793, 859
BsmAI	GTCTC	2 cut(s)	79, 1040
BsmFI	GGGAC	3 cut(s)	306, 683, 770
BsnI	GGCC	1 cut(s)	594
Bsp1286I	GDGCHC	2 cut(s)	302, 946
Bsp143I	GATC	3 cut(s)	443, 669, 1092
BspACI	CCGC	6 cut(s)	104, 227, 286, 1027, 1143, 1303
BspANI	GGCC	1 cut(s)	594
BspCNI	CTCAG	4 cut(s)	154, 189, 475, 508
BspLI	GGNNCC	3 cut(s)	280, 1197, 1219
BspMI	ACCTGC	1 cut(s)	70
BspOI	GCTAGC	2 cut(s)	384, 1077
BspPI	GGATC	2 cut(s)	451, 1100
BspT107I	GGYRCC	2 cut(s)	278, 1217
BsrDI	GCAATG	2 cut(s)	426, 1153
BsrI	ACTGG	1 cut(s)	1264
BssECI	CCNNGG	1 cut(s)	700
BssMI	GATC	3 cut(s)	443, 669, 1092
BssNI	GRCGYC	1 cut(s)	158
Bst2UI	CCWGG	2 cut(s)	702, 807
Bst4CI	ACNGT	5 cut(s)	195, 474, 496, 1099, 1117
BstACI	GRCGYC	1 cut(s)	158
BstAPI	GCANNNNNTGC	1 cut(s)	365
BstC8I	GCNNGC	5 cut(s)	171, 382, 869, 1075, 1270
BstDEI	CTNAG	4 cut(s)	162, 176, 483, 516
BstF5I	GGATG	4 cut(s)	76, 186, 396, 588
BstH2I	RGCGCY	1 cut(s)	604
BstHHI	GCGC	2 cut(s)	603, 744
BstKTI	GATC	3 cut(s)	446, 672, 1095
BstMAI	GTCTC	2 cut(s)	79, 1040
BstMBI	GATC	3 cut(s)	443, 669, 1092
BstMWI	GCNNNNNNNGC	9 cut(s)	35, 101, 166, 365, 506, 600, 623, 950, 1299
BstNI	CCWGG	2 cut(s)	702, 807
BstSCI	CCNGG	4 cut(s)	322, 700, 805, 1063
BstSFI	CTRYAG	3 cut(s)	198, 354, 1307
BstSLI	GKGCMC	1 cut(s)	302
BstV1I	GCAGC	3 cut(s)	257, 965, 1270
Bsu36I	CCTNAGG	1 cut(s)	162
BsuI	GTATCC	1 cut(s)	820
BsuRI	GGCC	1 cut(s)	594
BtsCI	GGATG	4 cut(s)	76, 186, 396, 588
BtsIMutI	CAGTG	2 cut(s)	1095, 1257
BveI	ACCTGC	1 cut(s)	70
Cac8I	GCNNGC	5 cut(s)	171, 382, 869, 1075, 1270
CfoI	GCGC	2 cut(s)	603, 744
CseI	GACGC	1 cut(s)	166
CsiI	ACCWGGT	1 cut(s)	805
Csp6I	GTAC	1 cut(s)	839
CviAII	CATG	4 cut(s)	223, 745, 1078, 1089
CviQI	GTAC	1 cut(s)	839
DdeI	CTNAG	4 cut(s)	162, 176, 483, 516
DpnI	GATC	3 cut(s)	445, 671, 1094
DpnII	GATC	3 cut(s)	443, 669, 1092
DraI	TTTAAA	1 cut(s)	1276
DriI	GACNNNNNGTC	1 cut(s)	1065
EaeI	YGGCCR	1 cut(s)	592
Eam1105I	GACNNNNNGTC	1 cut(s)	1065
EciI	GGCGGA	1 cut(s)	242
Eco47III	AGCGCT	1 cut(s)	602
Eco57I	CTGAAG	1 cut(s)	941
Eco81I	CCTNAGG	1 cut(s)	162
EcoRII	CCWGG	2 cut(s)	700, 805
FaeI	CATG	4 cut(s)	226, 748, 1081, 1092
FalI	AAGNNNNNCTT	2 cut(s)	963, 995
FaqI	GGGAC	3 cut(s)	306, 683, 770
FatI	CATG	4 cut(s)	222, 744, 1077, 1088
FauNDI	CATATG	1 cut(s)	987
Fnu4HI	GCNGC	7 cut(s)	105, 246, 954, 1028, 1144, 1284, 1303
FokI	GGATG	4 cut(s)	83, 193, 383, 595
Fsp4HI	GCNGC	7 cut(s)	105, 246, 954, 1028, 1144, 1284, 1303
FspBI	CTAG	9 cut(s)	369, 381, 401, 416, 648, 950, 1074, 1169, 1238
FspI	TGCGCA	1 cut(s)	743
GlaI	GCGC	2 cut(s)	602, 743
GluI	GCNGC	7 cut(s)	105, 246, 954, 1028, 1144, 1284, 1303
GsaI	CCCAGC	2 cut(s)	297, 995
HaeII	RGCGCY	1 cut(s)	604
HaeIII	GGCC	1 cut(s)	594
HapII	CCGG	3 cut(s)	101, 324, 1064
HgaI	GACGC	1 cut(s)	166
HhaI	GCGC	2 cut(s)	603, 744
Hin1I	GRCGYC	1 cut(s)	158
Hin1II	CATG	4 cut(s)	226, 748, 1081, 1092
Hin6I	GCGC	2 cut(s)	601, 742
HinP1I	GCGC	2 cut(s)	601, 742
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	3 cut(s)	372, 1060, 1152
HpaII	CCGG	3 cut(s)	101, 324, 1064
Hpy166II	GTNNAC	1 cut(s)	688
Hpy188I	TCNGA	5 cut(s)	130, 448, 669, 921, 1162
Hpy188III	TCNNGA	3 cut(s)	20, 178, 824
Hpy8I	GTNNAC	1 cut(s)	688
HpyAV	CCTTC	4 cut(s)	235, 566, 916, 1208
HpyCH4III	ACNGT	5 cut(s)	195, 474, 496, 1099, 1117
HpyCH4V	TGCA	7 cut(s)	65, 123, 434, 539, 1035, 1175, 1286
HpyF10VI	GCNNNNNNNGC	9 cut(s)	35, 101, 166, 365, 506, 600, 623, 950, 1299
HpyF3I	CTNAG	4 cut(s)	162, 176, 483, 516
Hsp92I	GRCGYC	1 cut(s)	158
Hsp92II	CATG	4 cut(s)	226, 748, 1081, 1092
HspAI	GCGC	2 cut(s)	601, 742
Kzo9I	GATC	3 cut(s)	443, 669, 1092
LmnI	GCTCC	3 cut(s)	166, 220, 941
Lsp1109I	GCAGC	3 cut(s)	257, 965, 1270
LweI	GCATC	4 cut(s)	16, 367, 526, 573
MabI	ACCWGGT	1 cut(s)	805
MaeI	CTAG	9 cut(s)	369, 381, 401, 416, 648, 950, 1074, 1169, 1238
MaeIII	GTNAC	2 cut(s)	811, 1240
MalI	GATC	3 cut(s)	445, 671, 1094
MboI	GATC	3 cut(s)	443, 669, 1092
MhlI	GDGCHC	2 cut(s)	302, 946
MluCI	AATT	4 cut(s)	55, 732, 935, 1133
MlyI	GAGTC	2 cut(s)	381, 1054
MmeI	TCCRAC	2 cut(s)	153, 560
MnlI	CCTC	8 cut(s)	21, 33, 126, 157, 569, 787, 921, 1122
MseI	TTAA	3 cut(s)	488, 770, 1275
MspA1I	CMGCKG	1 cut(s)	1283
MspI	CCGG	3 cut(s)	101, 324, 1064
MspR9I	CCNGG	4 cut(s)	324, 702, 807, 1065
MvaI	CCWGG	2 cut(s)	702, 807
MwoI	GCNNNNNNNGC	9 cut(s)	35, 101, 166, 365, 506, 600, 623, 950, 1299
NciI	CCSGG	2 cut(s)	324, 1065
NdeI	CATATG	1 cut(s)	987
NdeII	GATC	3 cut(s)	443, 669, 1092
NheI	GCTAGC	2 cut(s)	380, 1073
NlaIII	CATG	4 cut(s)	226, 748, 1081, 1092
NlaIV	GGNNCC	3 cut(s)	280, 1197, 1219
NmuCI	GTSAC	1 cut(s)	1240
NsbI	TGCGCA	1 cut(s)	743
PfeI	GAWTC	1 cut(s)	1152
PflMI	CCANNNNNTGG	1 cut(s)	275
PkrI	GCNGC	7 cut(s)	106, 247, 955, 1029, 1145, 1285, 1304
PleI	GAGTC	2 cut(s)	380, 1054
PpsI	GAGTC	2 cut(s)	380, 1054
Psp6I	CCWGG	2 cut(s)	700, 805
PspFI	CCCAGC	2 cut(s)	293, 991
PspGI	CCWGG	2 cut(s)	700, 805
PspN4I	GGNNCC	3 cut(s)	280, 1197, 1219
PvuII	CAGCTG	1 cut(s)	1283
RsaI	GTAC	1 cut(s)	840
RsaNI	GTAC	1 cut(s)	839
SaqAI	TTAA	3 cut(s)	488, 770, 1275
SatI	GCNGC	7 cut(s)	105, 246, 954, 1028, 1144, 1284, 1303
Sau3AI	GATC	3 cut(s)	443, 669, 1092
SchI	GAGTC	2 cut(s)	381, 1054
ScrFI	CCNGG	4 cut(s)	324, 702, 807, 1065
SduI	GDGCHC	2 cut(s)	302, 946
SexAI	ACCWGGT	1 cut(s)	805
SfaNI	GCATC	4 cut(s)	16, 367, 526, 573
SfcI	CTRYAG	3 cut(s)	198, 354, 1307
Sse9I	AATT	4 cut(s)	55, 732, 935, 1133
SsiI	CCGC	6 cut(s)	104, 227, 286, 1027, 1143, 1303
SspI	AATATT	1 cut(s)	467
SspMI	CTAG	9 cut(s)	369, 381, 401, 416, 648, 950, 1074, 1169, 1238
StyD4I	CCNGG	4 cut(s)	322, 700, 805, 1063
TaaI	ACNGT	5 cut(s)	195, 474, 496, 1099, 1117
TaqI	TCGA	1 cut(s)	375
TasI	AATT	4 cut(s)	55, 732, 935, 1133
TauI	GCSGC	4 cut(s)	107, 1030, 1146, 1305
TfiI	GAWTC	1 cut(s)	1152
Tru1I	TTAA	3 cut(s)	488, 770, 1275
Tru9I	TTAA	3 cut(s)	488, 770, 1275
TscAI	CASTG	2 cut(s)	1102, 1264
TseFI	GTSAC	1 cut(s)	1240
TseI	GCWGC	3 cut(s)	245, 953, 1283
Tsp45I	GTSAC	1 cut(s)	1240
TspDTI	ATGAA	5 cut(s)	197, 385, 395, 399, 974
TspRI	CASTG	2 cut(s)	1102, 1264
Van91I	CCANNNNNTGG	1 cut(s)	275
XspI	CTAG	9 cut(s)	369, 381, 401, 416, 648, 950, 1074, 1169, 1238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.