Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0011467

Physical Location & Seq

Genomic Coordinates Forward (+)

25091257 .. 25101071

Gene Structure 9815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1169900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGAGAAAGACGTTGCTCCAATTATGGCAGAGTATTGGGAGAAGGCAGAGTTTCCATTTCAAATTATTCCAAAGCTTGGTGCTTTGCGCATTGCTGGTGGGACAATCAAGGGTTATGGGTGTCCTGGTCTTTCTATTACTGCAAATGCTTTTGCTACAGCTGAAATTGCTAGAGTTGATGCAAGCTGTTCCACTTTCTTCTTGGTTCATTCCTCAGCAGCAATGCTTACTATTGCATTATGTGGGTCGGAGGCTCAAAAGCAGAAATATCTACCTTCTTTGTCTGAATTTAAGACTGTCGCCTGCTGGGGTTTGATTGAGCCTGACTATGGAAGTGATGCGAGTGCCTTGAGAGCAACAGCAACAAAGGTGGAAGGAGGTTGGGTACTTGAAGGCCAAAAGCGATGGATAGGAAACAGTACATTTGCTGATGTCTTGATTATTTTTGCTAGGAATACAACAACAAATCAGATTAATGGGTATAAAATAAAATTGGTTTACGCATTGTTCAAAATGGAAAGGCTACCTGGTGTTAATTCTGTTCAGGATACTAACAAGGTTCTTGCTGTTTCGCGTGTCATGGTCGCCTGGCAACCTATTGGTTTTTGTATGGGGGTCTATGATATGTGTCACAGGTATCTGAAGGAGAGGAAACAATTTGGAGCCCCTCTTGCAGCTTTCCAGATCAACCAAGAGAAACTTGTCCGTATGCTTGGTAATGTTCAAGCTATGGTTCTTATAGGCTGGCGCCTCTGCAAGATGTATGAGGCGGGTAAAATGACTCCAGGTCATGCTAGCACGGGGAAGTCATGGATCACTCTGAGGGCAAGGGAAACGGTTGCTCTAGGGAGGGAATTACTTGGTGGCAATGGAATCTTATCTGATTTTCTTGTTGCAAAGGCTTTCGGTGATTTGGAACCCATCTACACATTTGAAGGCACGTATGACATCAACGCCTTGGTCACCGGTAGGGAAGTCACTGGCATTGCCAGCTTCAGGCCAGCTGCATCAACCCAGCGAAGCCGTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003997 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009514 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016042 GO:0016054 GO:0016491 GO:0016627 GO:0016634 GO:0019395 GO:0019752 GO:0022414 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0034440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046459 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00071 ko00592 ko01040 ko01100 ko01110 ko01212 ko03320 ko04024 ko04146 map00071 map00592 map01040 map01100 map01110 map01212 map03320 map04024 map04146

Pfam Domains

Protein Families

Acyl-CoA_dh_1 Acyl-CoA_dh_M Acyl-CoA_dh_N

Protein Analysis

344

Amino Acids

37.58

Weight (kDa)

9.15

Isoelectric Point (pI)

30.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyl-CoA_dh_N	PF02771	1 - 95	5.6e-22	Acyl-CoA dehydrogenase, N-terminal domain
Acyl-CoA_dh_M	PF02770	102 - 189	7.3e-12	Acyl-CoA dehydrogenase, middle domain
Acyl-CoA_dh_1	PF00441	185 - 325	4.1e-24	Acyl-CoA dehydrogenase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51840
fragaria_vesca	FvH4_6g11280 FvH4_6g11280
malus_domestica	MD04G1155700.v1.1 MD12G1169900.v1.1
prunus_persica	Prupe.6G279200_v2.0.a1
pyrus_communis	pycom04g14050 pycom12g16190 pycom12g16220
rosa_chinensis	RchiOBHm_Chr3g0462821
rosa_laevigata	RLG00000024830
rosa_multiflora	Rmu_sc0000766.1_g000008 Rmu_sc0009174.1_g000003
rosa_roxburghii	Rroxscaffold_6G00417180
rosa_rugosa	Rorug03G0059400
rosa_samantha	Rh3AG117500 Rh3BG121300 Rh3CG124200 Rh3DG122900
rosa_wichuraiana	Rw3G009960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	89
AccB1I	GGYRCC	1 cut(s)	747
AccB7I	CCANNNNNTGG	1 cut(s)	77
AccII	CGCG	1 cut(s)	574
AciI	CCGC	1 cut(s)	770
AclWI	GGATC	1 cut(s)	821
AcsI	RAATTY	1 cut(s)	287
AcuI	CTGAAG	2 cut(s)	662, 979
AcyI	GRCGYC	1 cut(s)	748
AfaI	GTAC	2 cut(s)	387, 421
AfiI	CCNNNNNNNGG	3 cut(s)	77, 329, 996
AgeI	ACCGGT	1 cut(s)	965
AgsI	TTSAA	5 cut(s)	62, 392, 511, 725, 935
AhdI	GACNNNNNGTC	1 cut(s)	786
AjnI	CCWGG	4 cut(s)	124, 526, 587, 784
AluBI	AGCT	7 cut(s)	76, 161, 186, 677, 728, 993, 1004
AluI	AGCT	7 cut(s)	76, 161, 186, 677, 728, 993, 1004
AlwI	GGATC	1 cut(s)	821
AoxI	GGCC	2 cut(s)	394, 998
ApeKI	GCWGC	3 cut(s)	218, 674, 1004
ApoI	RAATTY	1 cut(s)	287
AseI	ATTAAT	1 cut(s)	474
AsiGI	ACCGGT	1 cut(s)	965
AspLEI	GCGC	2 cut(s)	90, 750
AsuHPI	GGTGA	2 cut(s)	920, 955
AsuNHI	GCTAGC	1 cut(s)	794
BanI	GGYRCC	1 cut(s)	747
BanII	GRGCYC	1 cut(s)	667
BbvCI	CCTCAGC	1 cut(s)	214
BbvI	GCAGC	3 cut(s)	230, 686, 991
BccI	CCATC	2 cut(s)	399, 929
BceAI	ACGGC	1 cut(s)	1008
BciT130I	CCWGG	4 cut(s)	126, 528, 589, 786
BciVI	GTATCC	1 cut(s)	541
BfaI	CTAG	4 cut(s)	171, 450, 795, 845
BfmI	CTRYAG	2 cut(s)	156, 1028
BfoI	RGCGCY	1 cut(s)	751
BfuI	GTATCC	1 cut(s)	541
BisI	GCNGC	3 cut(s)	219, 675, 1005
BlsI	GCNGC	3 cut(s)	220, 676, 1006
Bme1390I	CCNGG	4 cut(s)	126, 528, 589, 786
BmeRI	GACNNNNNGTC	1 cut(s)	786
BmiI	GGNNCC	3 cut(s)	664, 749, 918
BmrFI	CCNGG	4 cut(s)	126, 528, 589, 786
BmsI	GCATC	3 cut(s)	169, 328, 1016
BmtI	GCTAGC	1 cut(s)	798
BpmI	CTGGAG	1 cut(s)	768
Bpu10I	CCTNAGC	1 cut(s)	214
BpuEI	CTTGAG	1 cut(s)	370
BsaAI	YACGTR	1 cut(s)	942
BsaHI	GRCGYC	1 cut(s)	748
BsaJI	CCNNGG	1 cut(s)	957
BsaWI	WCCGGW	1 cut(s)	965
BsaXI	ACNNNNNCTCC	2 cut(s)	369, 399
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 329, 996
Bse118I	RCCGGY	1 cut(s)	965
Bse1I	ACTGG	1 cut(s)	985
Bse3DI	GCAATG	4 cut(s)	90, 228, 874, 984
BseBI	CCWGG	4 cut(s)	126, 528, 589, 786
BseDI	CCNNGG	1 cut(s)	957
BseLI	CCNNNNNNNGG	3 cut(s)	77, 329, 996
BseMI	GCAATG	4 cut(s)	90, 228, 874, 984
BseMII	CTCAG	2 cut(s)	228, 812
BseNI	ACTGG	1 cut(s)	985
BseXI	GCAGC	3 cut(s)	230, 686, 991
BseYI	CCCAGC	2 cut(s)	306, 1014
Bsh1236I	CGCG	1 cut(s)	574
BshFI	GGCC	2 cut(s)	396, 1000
BshNI	GGYRCC	1 cut(s)	747
BshTI	ACCGGT	1 cut(s)	965
BsiSI	CCGG	1 cut(s)	966
BslFI	GGGAC	1 cut(s)	115
BslI	CCNNNNNNNGG	3 cut(s)	77, 329, 996
BsmFI	GGGAC	1 cut(s)	115
BsnI	GGCC	2 cut(s)	396, 1000
Bsp1286I	GDGCHC	1 cut(s)	667
Bsp143I	GATC	2 cut(s)	684, 813
BspACI	CCGC	1 cut(s)	770
BspANI	GGCC	2 cut(s)	396, 1000
BspCNI	CTCAG	2 cut(s)	227, 813
BspFNI	CGCG	1 cut(s)	574
BspLI	GGNNCC	3 cut(s)	664, 749, 918
BspOI	GCTAGC	1 cut(s)	798
BspPI	GGATC	1 cut(s)	821
BspT107I	GGYRCC	1 cut(s)	747
BsrDI	GCAATG	4 cut(s)	90, 228, 874, 984
BsrFI	RCCGGY	1 cut(s)	965
BsrI	ACTGG	1 cut(s)	985
BssAI	RCCGGY	1 cut(s)	965
BssECI	CCNNGG	1 cut(s)	957
BssMI	GATC	2 cut(s)	684, 813
BssNI	GRCGYC	1 cut(s)	748
BssT1I	CCWWGG	1 cut(s)	957
Bst2UI	CCWGG	4 cut(s)	126, 528, 589, 786
Bst4CI	ACNGT	3 cut(s)	298, 419, 838
BstACI	GRCGYC	1 cut(s)	748
BstBAI	YACGTR	1 cut(s)	942
BstC8I	GCNNGC	6 cut(s)	184, 304, 746, 796, 991, 1002
BstDEI	CTNAG	2 cut(s)	214, 821
BstEII	GGTNACC	1 cut(s)	961
BstFNI	CGCG	1 cut(s)	574
BstH2I	RGCGCY	1 cut(s)	751
BstHHI	GCGC	2 cut(s)	90, 750
BstKTI	GATC	2 cut(s)	687, 816
BstMBI	GATC	2 cut(s)	684, 813
BstMWI	GCNNNNNNNGC	4 cut(s)	167, 353, 671, 990
BstNI	CCWGG	4 cut(s)	126, 528, 589, 786
BstPI	GGTNACC	1 cut(s)	961
BstSCI	CCNGG	4 cut(s)	124, 526, 587, 784
BstSFI	CTRYAG	2 cut(s)	156, 1028
BstUI	CGCG	1 cut(s)	574
BstV1I	GCAGC	3 cut(s)	230, 686, 991
BsuI	GTATCC	1 cut(s)	541
BsuRI	GGCC	2 cut(s)	396, 1000
BtgZI	GCGATG	1 cut(s)	418
BtsIMutI	CAGTG	1 cut(s)	978
Cac8I	GCNNGC	6 cut(s)	184, 304, 746, 796, 991, 1002
CfoI	GCGC	2 cut(s)	90, 750
Cfr10I	RCCGGY	1 cut(s)	965
CsiI	ACCWGGT	1 cut(s)	526
Csp6I	GTAC	2 cut(s)	386, 420
CspAI	ACCGGT	1 cut(s)	965
CspCI	CAANNNNNGTGG	2 cut(s)	351, 386
CviAII	CATG	3 cut(s)	580, 791, 810
CviQI	GTAC	2 cut(s)	386, 420
DdeI	CTNAG	2 cut(s)	214, 821
DinI	GGCGCC	1 cut(s)	749
DpnI	GATC	2 cut(s)	686, 815
DpnII	GATC	2 cut(s)	684, 813
DriI	GACNNNNNGTC	1 cut(s)	786
Eam1105I	GACNNNNNGTC	1 cut(s)	786
Eco130I	CCWWGG	1 cut(s)	957
Eco24I	GRGCYC	1 cut(s)	667
Eco57I	CTGAAG	2 cut(s)	662, 979
Eco91I	GGTNACC	1 cut(s)	961
EcoO65I	GGTNACC	1 cut(s)	961
EcoRII	CCWGG	4 cut(s)	124, 526, 587, 784
EcoT14I	CCWWGG	1 cut(s)	957
EcoT38I	GRGCYC	1 cut(s)	667
EgeI	GGCGCC	1 cut(s)	749
EheI	GGCGCC	1 cut(s)	749
ErhI	CCWWGG	1 cut(s)	957
FaeI	CATG	3 cut(s)	583, 794, 813
FalI	AAGNNNNNCTT	2 cut(s)	684, 716
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	3 cut(s)	579, 790, 809
FauI	CCCGC	1 cut(s)	763
Fnu4HI	GCNGC	3 cut(s)	219, 675, 1005
FriOI	GRGCYC	1 cut(s)	667
Fsp4HI	GCNGC	3 cut(s)	219, 675, 1005
FspBI	CTAG	4 cut(s)	171, 450, 795, 845
FspI	TGCGCA	1 cut(s)	89
GlaI	GCGC	2 cut(s)	89, 749
GluI	GCNGC	3 cut(s)	219, 675, 1005
GsaI	CCCAGC	2 cut(s)	310, 1018
GsuI	CTGGAG	1 cut(s)	768
HaeII	RGCGCY	1 cut(s)	751
HaeIII	GGCC	2 cut(s)	396, 1000
HapII	CCGG	1 cut(s)	966
HhaI	GCGC	2 cut(s)	90, 750
Hin1I	GRCGYC	1 cut(s)	748
Hin1II	CATG	3 cut(s)	583, 794, 813
Hin6I	GCGC	2 cut(s)	88, 748
HinP1I	GCGC	2 cut(s)	88, 748
HindIII	AAGCTT	1 cut(s)	74
HinfI	GANTC	2 cut(s)	781, 873
HpaII	CCGG	1 cut(s)	966
HphI	GGTGA	2 cut(s)	920, 955
Hpy166II	GTNNAC	1 cut(s)	499
Hpy188I	TCNGA	6 cut(s)	250, 286, 471, 642, 822, 883
Hpy188III	TCNNGA	3 cut(s)	436, 545, 682
Hpy8I	GTNNAC	1 cut(s)	499
HpyAV	CCTTC	6 cut(s)	37, 285, 368, 386, 637, 929
HpyCH4III	ACNGT	3 cut(s)	298, 419, 838
HpyCH4IV	ACGT	2 cut(s)	12, 941
HpyCH4V	TGCA	7 cut(s)	143, 182, 236, 674, 756, 896, 1007
HpyF10VI	GCNNNNNNNGC	4 cut(s)	167, 353, 671, 990
HpyF3I	CTNAG	2 cut(s)	214, 821
HpySE526I	ACGT	2 cut(s)	12, 941
Hsp92I	GRCGYC	1 cut(s)	748
Hsp92II	CATG	3 cut(s)	583, 794, 813
HspAI	GCGC	2 cut(s)	88, 748
KasI	GGCGCC	1 cut(s)	747
Kzo9I	GATC	2 cut(s)	684, 813
LmnI	GCTCC	2 cut(s)	22, 662
Lsp1109I	GCAGC	3 cut(s)	230, 686, 991
LweI	GCATC	3 cut(s)	169, 328, 1016
MabI	ACCWGGT	1 cut(s)	526
MaeI	CTAG	4 cut(s)	171, 450, 795, 845
MaeII	ACGT	2 cut(s)	12, 941
MaeIII	GTNAC	3 cut(s)	629, 961, 976
MalI	GATC	2 cut(s)	686, 815
MboI	GATC	2 cut(s)	684, 813
MboII	GAAGA	1 cut(s)	190
MhlI	GDGCHC	1 cut(s)	667
MluCI	AATT	8 cut(s)	21, 63, 165, 287, 491, 535, 656, 854
Mly113I	GGCGCC	1 cut(s)	748
MlyI	GAGTC	1 cut(s)	775
MmeI	TCCRAC	1 cut(s)	228
MnlI	CCTC	9 cut(s)	223, 244, 371, 642, 678, 760, 761, 816, 843
MseI	TTAA	3 cut(s)	291, 474, 534
MspA1I	CMGCKG	2 cut(s)	161, 1004
MspI	CCGG	1 cut(s)	966
MspR9I	CCNGG	4 cut(s)	126, 528, 589, 786
MvaI	CCWGG	4 cut(s)	126, 528, 589, 786
MvnI	CGCG	1 cut(s)	574
MwoI	GCNNNNNNNGC	4 cut(s)	167, 353, 671, 990
NarI	GGCGCC	1 cut(s)	748
NdeII	GATC	2 cut(s)	684, 813
NheI	GCTAGC	1 cut(s)	794
NlaIII	CATG	3 cut(s)	583, 794, 813
NlaIV	GGNNCC	3 cut(s)	664, 749, 918
NmuCI	GTSAC	3 cut(s)	629, 961, 976
NsbI	TGCGCA	1 cut(s)	89
PfeI	GAWTC	1 cut(s)	873
PflMI	CCANNNNNTGG	1 cut(s)	77
PinAI	ACCGGT	1 cut(s)	965
PkrI	GCNGC	3 cut(s)	220, 676, 1006
PleI	GAGTC	1 cut(s)	775
PluTI	GGCGCC	1 cut(s)	751
PpsI	GAGTC	1 cut(s)	775
Ppu21I	YACGTR	1 cut(s)	942
PshBI	ATTAAT	1 cut(s)	474
Psp6I	CCWGG	4 cut(s)	124, 526, 587, 784
PspEI	GGTNACC	1 cut(s)	961
PspFI	CCCAGC	2 cut(s)	306, 1014
PspGI	CCWGG	4 cut(s)	124, 526, 587, 784
PspN4I	GGNNCC	3 cut(s)	664, 749, 918
PvuII	CAGCTG	2 cut(s)	161, 1004
RsaI	GTAC	2 cut(s)	387, 421
RsaNI	GTAC	2 cut(s)	386, 420
SaqAI	TTAA	3 cut(s)	291, 474, 534
SatI	GCNGC	3 cut(s)	219, 675, 1005
Sau3AI	GATC	2 cut(s)	684, 813
SchI	GAGTC	1 cut(s)	775
ScrFI	CCNGG	4 cut(s)	126, 528, 589, 786
SduI	GDGCHC	1 cut(s)	667
SexAI	ACCWGGT	1 cut(s)	526
SfaNI	GCATC	3 cut(s)	169, 328, 1016
SfcI	CTRYAG	2 cut(s)	156, 1028
SfoI	GGCGCC	1 cut(s)	749
SmlI	CTYRAG	1 cut(s)	349
SmoI	CTYRAG	1 cut(s)	349
Sse9I	AATT	8 cut(s)	21, 63, 165, 287, 491, 535, 656, 854
SsiI	CCGC	1 cut(s)	770
SspDI	GGCGCC	1 cut(s)	747
SspMI	CTAG	4 cut(s)	171, 450, 795, 845
StyD4I	CCNGG	4 cut(s)	124, 526, 587, 784
StyI	CCWWGG	1 cut(s)	957
TaaI	ACNGT	3 cut(s)	298, 419, 838
TaiI	ACGT	2 cut(s)	15, 944
TasI	AATT	8 cut(s)	21, 63, 165, 287, 491, 535, 656, 854
TatI	WGTACW	1 cut(s)	419
TfiI	GAWTC	1 cut(s)	873
Tru1I	TTAA	3 cut(s)	291, 474, 534
Tru9I	TTAA	3 cut(s)	291, 474, 534
TscAI	CASTG	1 cut(s)	985
TseFI	GTSAC	3 cut(s)	629, 961, 976
TseI	GCWGC	3 cut(s)	218, 674, 1004
Tsp45I	GTSAC	3 cut(s)	629, 961, 976
TspDTI	ATGAA	1 cut(s)	197
TspGWI	ACGGA	1 cut(s)	695
TspRI	CASTG	1 cut(s)	985
Van91I	CCANNNNNTGG	1 cut(s)	77
VspI	ATTAAT	1 cut(s)	474
XapI	RAATTY	1 cut(s)	287
XcmI	CCANNNNNNNNNTGG	1 cut(s)	199
XspI	CTAG	4 cut(s)	171, 450, 795, 845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.