Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0011467

Physical Location & Seq

Genomic Coordinates Forward (+)

16946221 .. 16948314

Gene Structure 2094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g14050.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGTATTTGTCATGGCTGTGATCTCATGCTATATAACGTATTCTTTGTGCTGTTGGGATCATCAGGTGGAAGGAGGTTGGATACTTGAGGGCCAAAAGCGATGGATAGGAAACAGTACATTTGCTGATGTCTTGGTTATTTTTGCTAGGAATACAACAACAAATCAGATTAATGGATTTATAATAAAGAAGAATGCCCCTGGACTGGCAGCTACAAAAATAGAAAATAAAATTGGTCTACGCATTGTCCAAAATGGAGATATTCTCTTAAATAAAGTATTTGTTCCTGATGAGGAAAGGCTGCCTGGTGTTAATTCTTTTCAGGATACTAGCAAGGTTCTTGCTGTTTCGCGTGTCATGGTCGCCTGGCAACCTATTGGTTTATCTATGGGAGTCTATGATATGTGTCACAGGTATCTGAAGGAGAGGAAACAATTTGGAGCCCCCCTTGCAGCTTTCCAAATCAACCAAGAGAAACTTGTTCGTATGCTTGGTAATGTTCAAGCTATGGTTCTTATAGGTTGGCGCCTCTGCAAGCTGTATGAGGCAGGTAAAATGACTCCAGGTCATGCTAGCATGGGGAAGGCATGGATCACTCTGAGAGCAAGGGAAACGGTTGCTCTAGGGAGGGAATTGCTAGGTGGCAACGGAATCTTATCTGATTTTCTTGTTGCAAAGGCTTTCGGTGATCTGGAACCCATCTACACATTCGAAGGCACGTATGACATCAACTCCTTGGTGACCGGCAGGGAAGTCACTGGCATTGCCAGCTTCAAGCCACCTGCGTCAAGCCAACGGAGCCGCCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003997 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009514 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016042 GO:0016054 GO:0016491 GO:0016627 GO:0016634 GO:0019395 GO:0019752 GO:0022414 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0034440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046459 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00071 ko00592 ko01040 ko01100 ko01110 ko01212 ko03320 ko04024 ko04146 map00071 map00592 map01040 map01100 map01110 map01212 map03320 map04024 map04146

Pfam Domains

Protein Families

Acyl-CoA_dh_1 Acyl-CoA_dh_M Acyl-CoA_dh_N

Protein Analysis

270

Amino Acids

29.84

Weight (kDa)

9.3

Isoelectric Point (pI)

29.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51840
fragaria_vesca	FvH4_6g11280 FvH4_6g11280
malus_domestica	MD04G1155700.v1.1 MD12G1169900.v1.1
prunus_persica	Prupe.6G279200_v2.0.a1
pyrus_communis	pycom04g14050 pycom12g16190 pycom12g16220
rosa_chinensis	RchiOBHm_Chr3g0462821
rosa_laevigata	RLG00000024830
rosa_multiflora	Rmu_sc0000766.1_g000008 Rmu_sc0009174.1_g000003
rosa_roxburghii	Rroxscaffold_6G00417180
rosa_rugosa	Rorug03G0059400
rosa_samantha	Rh3AG117500 Rh3BG121300 Rh3CG124200 Rh3DG122900
rosa_wichuraiana	Rw3G009960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	182
AarI	CACCTGC	1 cut(s)	790
Acc36I	ACCTGC	2 cut(s)	539, 790
AccB1I	GGYRCC	1 cut(s)	525
AccI	GTMKAC	1 cut(s)	238
AccII	CGCG	1 cut(s)	352
AciI	CCGC	1 cut(s)	802
AclWI	GGATC	2 cut(s)	66, 599
AcuI	CTGAAG	1 cut(s)	440
AcyI	GRCGYC	1 cut(s)	526
AfaI	GTAC	1 cut(s)	118
AfiI	CCNNNNNNNGG	1 cut(s)	205
AgsI	TTSAA	2 cut(s)	503, 775
AhdI	GACNNNNNGTC	1 cut(s)	564
AjnI	CCWGG	4 cut(s)	199, 304, 365, 562
AjuI	GAANNNNNNNTTGG	2 cut(s)	216, 248
AluBI	AGCT	5 cut(s)	212, 455, 506, 538, 771
AluI	AGCT	5 cut(s)	212, 455, 506, 538, 771
AlwI	GGATC	2 cut(s)	66, 599
AoxI	GGCC	1 cut(s)	91
ApeKI	GCWGC	3 cut(s)	209, 301, 452
AseI	ATTAAT	1 cut(s)	171
AspLEI	GCGC	1 cut(s)	528
AspS9I	GGNCC	1 cut(s)	91
AsuHPI	GGTGA	2 cut(s)	698, 751
AsuII	TTCGAA	1 cut(s)	711
AsuNHI	GCTAGC	1 cut(s)	572
BanI	GGYRCC	1 cut(s)	525
BanII	GRGCYC	1 cut(s)	445
BbvI	GCAGC	3 cut(s)	221, 288, 464
BccI	CCATC	2 cut(s)	96, 707
BciT130I	CCWGG	4 cut(s)	201, 306, 367, 564
BciVI	GTATCC	2 cut(s)	75, 319
BfaI	CTAG	5 cut(s)	147, 330, 573, 623, 638
BfmI	CTRYAG	1 cut(s)	806
BfoI	RGCGCY	1 cut(s)	529
BfuAI	ACCTGC	2 cut(s)	539, 790
BfuI	GTATCC	2 cut(s)	75, 319
BisI	GCNGC	4 cut(s)	210, 302, 453, 802
BlsI	GCNGC	4 cut(s)	211, 303, 454, 803
Bme1390I	CCNGG	4 cut(s)	201, 306, 367, 564
BmeRI	GACNNNNNGTC	1 cut(s)	564
BmgT120I	GGNCC	1 cut(s)	91
BmiI	GGNNCC	4 cut(s)	442, 527, 696, 800
BmrFI	CCNGG	4 cut(s)	201, 306, 367, 564
BmtI	GCTAGC	1 cut(s)	576
BplI	GAGNNNNNCTC	2 cut(s)	249, 281
BpmI	CTGGAG	1 cut(s)	546
Bpu14I	TTCGAA	1 cut(s)	711
BpuEI	CTTGAG	1 cut(s)	107
BsaAI	YACGTR	1 cut(s)	720
BsaHI	GRCGYC	1 cut(s)	526
BsaJI	CCNNGG	2 cut(s)	199, 735
BsaXI	ACNNNNNCTCC	2 cut(s)	716, 746
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
Bse118I	RCCGGY	1 cut(s)	743
Bse1I	ACTGG	2 cut(s)	210, 763
Bse3DI	GCAATG	1 cut(s)	762
BseBI	CCWGG	4 cut(s)	201, 306, 367, 564
BseDI	CCNNGG	2 cut(s)	199, 735
BseLI	CCNNNNNNNGG	1 cut(s)	205
BseMI	GCAATG	1 cut(s)	762
BseMII	CTCAG	1 cut(s)	590
BseNI	ACTGG	2 cut(s)	210, 763
BseXI	GCAGC	3 cut(s)	221, 288, 464
Bsh1236I	CGCG	1 cut(s)	352
BshFI	GGCC	1 cut(s)	93
BshNI	GGYRCC	1 cut(s)	525
BsiSI	CCGG	1 cut(s)	744
BslI	CCNNNNNNNGG	1 cut(s)	205
BsmI	GAATGC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	93
Bsp119I	TTCGAA	1 cut(s)	711
Bsp1286I	GDGCHC	1 cut(s)	445
Bsp143I	GATC	4 cut(s)	21, 58, 591, 688
BspACI	CCGC	1 cut(s)	802
BspANI	GGCC	1 cut(s)	93
BspCNI	CTCAG	1 cut(s)	591
BspFNI	CGCG	1 cut(s)	352
BspLI	GGNNCC	4 cut(s)	442, 527, 696, 800
BspMI	ACCTGC	2 cut(s)	539, 790
BspOI	GCTAGC	1 cut(s)	576
BspPI	GGATC	2 cut(s)	66, 599
BspT104I	TTCGAA	1 cut(s)	711
BspT107I	GGYRCC	1 cut(s)	525
BsrDI	GCAATG	1 cut(s)	762
BsrFI	RCCGGY	1 cut(s)	743
BsrI	ACTGG	2 cut(s)	210, 763
BssAI	RCCGGY	1 cut(s)	743
BssECI	CCNNGG	2 cut(s)	199, 735
BssMI	GATC	4 cut(s)	21, 58, 591, 688
BssNI	GRCGYC	1 cut(s)	526
BssT1I	CCWWGG	1 cut(s)	735
Bst2UI	CCWGG	4 cut(s)	201, 306, 367, 564
Bst4CI	ACNGT	2 cut(s)	116, 616
BstACI	GRCGYC	1 cut(s)	526
BstBAI	YACGTR	1 cut(s)	720
BstBI	TTCGAA	1 cut(s)	711
BstC8I	GCNNGC	3 cut(s)	536, 574, 769
BstDEI	CTNAG	1 cut(s)	599
BstEII	GGTNACC	1 cut(s)	739
BstFNI	CGCG	1 cut(s)	352
BstH2I	RGCGCY	1 cut(s)	529
BstHHI	GCGC	1 cut(s)	528
BstKTI	GATC	4 cut(s)	24, 61, 594, 691
BstMBI	GATC	4 cut(s)	21, 58, 591, 688
BstMWI	GCNNNNNNNGC	3 cut(s)	449, 768, 798
BstNI	CCWGG	4 cut(s)	201, 306, 367, 564
BstPI	GGTNACC	1 cut(s)	739
BstSCI	CCNGG	4 cut(s)	199, 304, 365, 562
BstSFI	CTRYAG	1 cut(s)	806
BstUI	CGCG	1 cut(s)	352
BstV1I	GCAGC	3 cut(s)	221, 288, 464
BsuI	GTATCC	2 cut(s)	75, 319
BsuRI	GGCC	1 cut(s)	93
BtgZI	GCGATG	1 cut(s)	115
BtsIMutI	CAGTG	1 cut(s)	756
BveI	ACCTGC	2 cut(s)	539, 790
Cac8I	GCNNGC	3 cut(s)	536, 574, 769
CfoI	GCGC	1 cut(s)	528
Cfr10I	RCCGGY	1 cut(s)	743
Cfr13I	GGNCC	1 cut(s)	91
CseI	GACGC	1 cut(s)	774
Csp6I	GTAC	1 cut(s)	117
CviAII	CATG	6 cut(s)	13, 27, 358, 569, 577, 588
CviQI	GTAC	1 cut(s)	117
DdeI	CTNAG	1 cut(s)	599
DinI	GGCGCC	1 cut(s)	527
DpnI	GATC	4 cut(s)	23, 60, 593, 690
DpnII	GATC	4 cut(s)	21, 58, 591, 688
DriI	GACNNNNNGTC	1 cut(s)	564
Eam1105I	GACNNNNNGTC	1 cut(s)	564
Eco130I	CCWWGG	1 cut(s)	735
Eco24I	GRGCYC	1 cut(s)	445
Eco57I	CTGAAG	1 cut(s)	440
Eco91I	GGTNACC	1 cut(s)	739
EcoO65I	GGTNACC	1 cut(s)	739
EcoRII	CCWGG	4 cut(s)	199, 304, 365, 562
EcoT14I	CCWWGG	1 cut(s)	735
EcoT38I	GRGCYC	1 cut(s)	445
EgeI	GGCGCC	1 cut(s)	527
EheI	GGCGCC	1 cut(s)	527
ErhI	CCWWGG	1 cut(s)	735
FaeI	CATG	6 cut(s)	16, 30, 361, 572, 580, 591
FalI	AAGNNNNNCTT	2 cut(s)	462, 494
FatI	CATG	6 cut(s)	12, 26, 357, 568, 576, 587
FblI	GTMKAC	1 cut(s)	238
Fnu4HI	GCNGC	4 cut(s)	210, 302, 453, 802
FriOI	GRGCYC	1 cut(s)	445
Fsp4HI	GCNGC	4 cut(s)	210, 302, 453, 802
FspBI	CTAG	5 cut(s)	147, 330, 573, 623, 638
GlaI	GCGC	1 cut(s)	527
GluI	GCNGC	4 cut(s)	210, 302, 453, 802
GsuI	CTGGAG	1 cut(s)	546
HaeII	RGCGCY	1 cut(s)	529
HaeIII	GGCC	1 cut(s)	93
HapII	CCGG	1 cut(s)	744
HgaI	GACGC	1 cut(s)	774
HhaI	GCGC	1 cut(s)	528
Hin1I	GRCGYC	1 cut(s)	526
Hin1II	CATG	6 cut(s)	16, 30, 361, 572, 580, 591
Hin6I	GCGC	1 cut(s)	526
HinP1I	GCGC	1 cut(s)	526
HinfI	GANTC	3 cut(s)	393, 559, 651
HpaII	CCGG	1 cut(s)	744
HphI	GGTGA	2 cut(s)	698, 751
Hpy166II	GTNNAC	1 cut(s)	239
Hpy188I	TCNGA	4 cut(s)	168, 420, 600, 661
Hpy188III	TCNNGA	3 cut(s)	287, 323, 692
Hpy8I	GTNNAC	1 cut(s)	239
HpyAV	CCTTC	4 cut(s)	65, 415, 577, 707
HpyCH4III	ACNGT	2 cut(s)	116, 616
HpyCH4IV	ACGT	2 cut(s)	38, 719
HpyCH4V	TGCA	3 cut(s)	452, 534, 674
HpyF10VI	GCNNNNNNNGC	3 cut(s)	449, 768, 798
HpyF3I	CTNAG	1 cut(s)	599
HpySE526I	ACGT	2 cut(s)	38, 719
Hsp92I	GRCGYC	1 cut(s)	526
Hsp92II	CATG	6 cut(s)	16, 30, 361, 572, 580, 591
HspAI	GCGC	1 cut(s)	526
KasI	GGCGCC	1 cut(s)	525
Kzo9I	GATC	4 cut(s)	21, 58, 591, 688
LmnI	GCTCC	2 cut(s)	440, 798
Lsp1109I	GCAGC	3 cut(s)	221, 288, 464
MaeI	CTAG	5 cut(s)	147, 330, 573, 623, 638
MaeII	ACGT	2 cut(s)	38, 719
MaeIII	GTNAC	3 cut(s)	407, 739, 754
MalI	GATC	4 cut(s)	23, 60, 593, 690
MboI	GATC	4 cut(s)	21, 58, 591, 688
MboII	GAAGA	1 cut(s)	202
MhlI	GDGCHC	1 cut(s)	445
MluCI	AATT	4 cut(s)	231, 313, 434, 632
Mly113I	GGCGCC	1 cut(s)	526
MlyI	GAGTC	2 cut(s)	402, 553
MmeI	TCCRAC	1 cut(s)	59
MnlI	CCTC	7 cut(s)	68, 82, 286, 420, 538, 539, 621
MseI	TTAA	3 cut(s)	171, 269, 312
MslI	CAYNNNNRTG	1 cut(s)	17
MspI	CCGG	1 cut(s)	744
MspR9I	CCNGG	4 cut(s)	201, 306, 367, 564
Mva1269I	GAATGC	1 cut(s)	199
MvaI	CCWGG	4 cut(s)	201, 306, 367, 564
MvnI	CGCG	1 cut(s)	352
MwoI	GCNNNNNNNGC	3 cut(s)	449, 768, 798
NarI	GGCGCC	1 cut(s)	526
NdeII	GATC	4 cut(s)	21, 58, 591, 688
NheI	GCTAGC	1 cut(s)	572
NlaIII	CATG	6 cut(s)	16, 30, 361, 572, 580, 591
NlaIV	GGNNCC	4 cut(s)	442, 527, 696, 800
NmuCI	GTSAC	3 cut(s)	407, 739, 754
NspV	TTCGAA	1 cut(s)	711
PaqCI	CACCTGC	1 cut(s)	790
PctI	GAATGC	1 cut(s)	199
PfeI	GAWTC	1 cut(s)	651
PkrI	GCNGC	4 cut(s)	211, 303, 454, 803
PleI	GAGTC	2 cut(s)	401, 553
PluTI	GGCGCC	1 cut(s)	529
PpsI	GAGTC	2 cut(s)	401, 553
Ppu21I	YACGTR	1 cut(s)	720
PshBI	ATTAAT	1 cut(s)	171
PsiI	TTATAA	1 cut(s)	182
Psp6I	CCWGG	4 cut(s)	199, 304, 365, 562
PspEI	GGTNACC	1 cut(s)	739
PspGI	CCWGG	4 cut(s)	199, 304, 365, 562
PspN4I	GGNNCC	4 cut(s)	442, 527, 696, 800
PspPI	GGNCC	1 cut(s)	91
RsaI	GTAC	1 cut(s)	118
RsaNI	GTAC	1 cut(s)	117
RseI	CAYNNNNRTG	1 cut(s)	17
SaqAI	TTAA	3 cut(s)	171, 269, 312
SatI	GCNGC	4 cut(s)	210, 302, 453, 802
Sau3AI	GATC	4 cut(s)	21, 58, 591, 688
Sau96I	GGNCC	1 cut(s)	91
SchI	GAGTC	2 cut(s)	402, 553
ScrFI	CCNGG	4 cut(s)	201, 306, 367, 564
SduI	GDGCHC	1 cut(s)	445
SfcI	CTRYAG	1 cut(s)	806
SfoI	GGCGCC	1 cut(s)	527
SfuI	TTCGAA	1 cut(s)	711
SmiMI	CAYNNNNRTG	1 cut(s)	17
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	4 cut(s)	231, 313, 434, 632
SsiI	CCGC	1 cut(s)	802
SspDI	GGCGCC	1 cut(s)	525
SspMI	CTAG	5 cut(s)	147, 330, 573, 623, 638
StyD4I	CCNGG	4 cut(s)	199, 304, 365, 562
StyI	CCWWGG	1 cut(s)	735
TaaI	ACNGT	2 cut(s)	116, 616
TaiI	ACGT	2 cut(s)	41, 722
TaqI	TCGA	1 cut(s)	711
TasI	AATT	4 cut(s)	231, 313, 434, 632
TatI	WGTACW	1 cut(s)	116
TauI	GCSGC	1 cut(s)	804
TfiI	GAWTC	1 cut(s)	651
Tru1I	TTAA	3 cut(s)	171, 269, 312
Tru9I	TTAA	3 cut(s)	171, 269, 312
TscAI	CASTG	1 cut(s)	763
TseFI	GTSAC	3 cut(s)	407, 739, 754
TseI	GCWGC	3 cut(s)	209, 301, 452
Tsp45I	GTSAC	3 cut(s)	407, 739, 754
TspGWI	ACGGA	1 cut(s)	663
TspRI	CASTG	1 cut(s)	763
VspI	ATTAAT	1 cut(s)	171
XmiI	GTMKAC	1 cut(s)	238
XspI	CTAG	5 cut(s)	147, 330, 573, 623, 638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.